RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 VGLL2Q8N8G2 317 aa22.38■■□□□ 1.17
CLN3-243ENST00000635973 CCDC85CA6NKD9 419 aa22.37■■□□□ 1.17
CLN3-243ENST00000635973 TRPA1O75762 1119 aa22.37■■□□□ 1.17
CLN3-243ENST00000635973 IFIT1P09914 478 aaKnown RBP22.37■■□□□ 1.17
CLN3-243ENST00000635973 SLC5A1P13866 664 aa22.37■■□□□ 1.17
CLN3-243ENST00000635973 GYG1P46976 350 aa22.37■■□□□ 1.17
CLN3-243ENST00000635973 PRKG1Q13976 671 aa22.37■■□□□ 1.17
CLN3-243ENST00000635973 CFAP100Q494V2 611 aa22.37■■□□□ 1.17
CLN3-243ENST00000635973 CSRNP1Q96S65 589 aa22.37■■□□□ 1.17
CLN3-243ENST00000635973 FRAT2O75474 233 aaPredicted RBP22.36■■□□□ 1.17
CLN3-243ENST00000635973 MTMR14Q8NCE2 650 aa22.36■■□□□ 1.17
CLN3-243ENST00000635973 ZBED3Q96IU2 234 aaPredicted RBP22.36■■□□□ 1.17
CLN3-243ENST00000635973 RNF186Q9NXI6 227 aa22.36■■□□□ 1.17
CLN3-243ENST00000635973 COL1A1P02452 1464 aaPredicted RBP22.35■■□□□ 1.17
CLN3-243ENST00000635973 ATP2B3Q16720 1220 aa22.35■■□□□ 1.17
CLN3-243ENST00000635973 CAVIN4Q5BKX8 364 aa22.35■■□□□ 1.17
CLN3-243ENST00000635973 MFSD14BQ5SR56 506 aa22.35■■□□□ 1.17
CLN3-243ENST00000635973 DEFB129Q9H1M3 183 aa22.35■■□□□ 1.17
CLN3-243ENST00000635973 VEZTQ9HBM0 779 aa22.35■■□□□ 1.17
CLN3-243ENST00000635973 FAM205AQ6ZU69 1335 aa22.34■■□□□ 1.17
CLN3-243ENST00000635973 TFCP2Q12800 502 aa22.34■■□□□ 1.17
CLN3-243ENST00000635973 DGKZQ13574 1117 aa22.34■■□□□ 1.17
CLN3-243ENST00000635973 TDRD7Q8NHU6 1098 aaKnown RBP22.34■■□□□ 1.17
CLN3-243ENST00000635973 LPIN2Q92539 896 aa22.34■■□□□ 1.17
CLN3-243ENST00000635973 FAM84BQ96KN1 310 aaPredicted RBP22.34■■□□□ 1.17
CLN3-243ENST00000635973 CLRN2A0PK11 232 aa22.33■■□□□ 1.17
CLN3-243ENST00000635973 SPDYE2BA6NHP3 402 aa22.33■■□□□ 1.17
CLN3-243ENST00000635973 SPDYE6P0CI01 402 aa22.33■■□□□ 1.17
CLN3-243ENST00000635973 MCOLN1Q9GZU1 580 aa22.33■■□□□ 1.17
CLN3-243ENST00000635973 ANGEL1Q9UNK9 670 aaKnown RBP22.33■■□□□ 1.17
CLN3-243ENST00000635973 TTF2Q9UNY4 1162 aaKnown RBP22.33■■□□□ 1.17
CLN3-243ENST00000635973 AKAP2Q9Y2D5 859 aa22.33■■□□□ 1.17
CLN3-243ENST00000635973 PPP2R3BQ9Y5P8 575 aa22.33■■□□□ 1.17
CLN3-243ENST00000635973 HSP90AB4PQ58FF6 505 aa22.32■■□□□ 1.16
CLN3-243ENST00000635973 PRMT6Q96LA8 375 aaPredicted RBP22.32■■□□□ 1.16
CLN3-243ENST00000635973 EXOC6BQ9Y2D4 811 aa22.32■■□□□ 1.16
CLN3-243ENST00000635973 NOP58Q9Y2X3 529 aaKnown RBP22.32■■□□□ 1.16
CLN3-243ENST00000635973 PPP1R12BO60237 982 aaPredicted RBP22.31■■□□□ 1.16
CLN3-243ENST00000635973 FGFR2P21802 821 aa22.31■■□□□ 1.16
CLN3-243ENST00000635973 MKRN3Q13064 507 aaKnown RBP22.31■■□□□ 1.16
CLN3-243ENST00000635973 SUPT20HL1Q3ZLR7 823 aa22.31■■□□□ 1.16
CLN3-243ENST00000635973 ERC1Q8IUD2 1116 aa22.31■■□□□ 1.16
CLN3-243ENST00000635973 SIRT2Q8IXJ6 389 aa22.31■■□□□ 1.16
CLN3-243ENST00000635973 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.31■■□□□ 1.16
CLN3-243ENST00000635973 PCDHAC2Q9Y5I4 1007 aa22.31■■□□□ 1.16
CLN3-243ENST00000635973 ARAP2Q8WZ64 1704 aa22.31■■□□□ 1.16
CLN3-243ENST00000635973 IRX6P78412 446 aaPredicted RBP22.3■■□□□ 1.16
CLN3-243ENST00000635973 CHAF1AQ13111 956 aaPredicted RBP22.3■■□□□ 1.16
CLN3-243ENST00000635973 IQSEC3Q9UPP2 1182 aaPredicted RBP22.3■■□□□ 1.16
CLN3-243ENST00000635973 A0A1B0GUL7 405 aa22.29■■□□□ 1.16
CLN3-243ENST00000635973 SREBF2Q12772 1141 aa22.29■■□□□ 1.16
CLN3-243ENST00000635973 TNFAIP1Q13829 316 aa22.29■■□□□ 1.16
CLN3-243ENST00000635973 EXOC6Q8TAG9 804 aa22.29■■□□□ 1.16
CLN3-243ENST00000635973 TBC1D22AQ8WUA7 517 aa22.29■■□□□ 1.16
CLN3-243ENST00000635973 SERPINA10Q9UK55 444 aa22.29■■□□□ 1.16
CLN3-243ENST00000635973 APBB1O00213 710 aa22.28■■□□□ 1.16
CLN3-243ENST00000635973 CENPBP07199 599 aaPredicted RBP22.28■■□□□ 1.16
CLN3-243ENST00000635973 BCAMP50895 628 aa22.28■■□□□ 1.16
CLN3-243ENST00000635973 AAMPQ13685 434 aa22.28■■□□□ 1.16
CLN3-243ENST00000635973 FBXO33Q7Z6M2 555 aa22.28■■□□□ 1.16
CLN3-243ENST00000635973 SLC10A4Q96EP9 437 aa22.28■■□□□ 1.16
CLN3-243ENST00000635973 NEUROD6Q96NK8 337 aa22.28■■□□□ 1.16
CLN3-243ENST00000635973 MYH13Q9UKX3 1938 aa22.27■■□□□ 1.16
CLN3-243ENST00000635973 TIMM10P62072 90 aa22.27■■□□□ 1.16
CLN3-243ENST00000635973 PCDHB15Q9Y5E8 787 aa22.27■■□□□ 1.16
CLN3-243ENST00000635973 ADORA1P30542 326 aa22.26■■□□□ 1.15
CLN3-243ENST00000635973 RASA3Q14644 834 aa22.26■■□□□ 1.15
CLN3-243ENST00000635973 LDLRAD1Q5T700 205 aa22.26■■□□□ 1.15
CLN3-243ENST00000635973 GORABQ5T7V8 394 aa22.26■■□□□ 1.15
CLN3-243ENST00000635973 TDRD3Q9H7E2 651 aaKnown RBP22.26■■□□□ 1.15
CLN3-243ENST00000635973 GNL3LQ9NVN8 582 aaKnown RBP22.26■■□□□ 1.15
CLN3-243ENST00000635973 FZD1Q9UP38 647 aa22.26■■□□□ 1.15
CLN3-243ENST00000635973 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.26■■□□□ 1.15
CLN3-243ENST00000635973 CRKP46108 304 aa22.25■■□□□ 1.15
CLN3-243ENST00000635973 IREB2P48200 963 aaKnown RBP22.25■■□□□ 1.15
CLN3-243ENST00000635973 TM4SF4P48230 202 aa22.25■■□□□ 1.15
CLN3-243ENST00000635973 TNNI2P48788 182 aa22.25■■□□□ 1.15
CLN3-243ENST00000635973 RGS19P49795 217 aa22.25■■□□□ 1.15
CLN3-243ENST00000635973 MLLT1Q03111 559 aaPredicted RBP22.25■■□□□ 1.15
CLN3-243ENST00000635973 TNNI3KQ59H18 835 aa22.25■■□□□ 1.15
CLN3-243ENST00000635973 BCL11AQ9H165 835 aa22.25■■□□□ 1.15
CLN3-243ENST00000635973 ZNF70Q9UC06 446 aaPredicted RBP22.25■■□□□ 1.15
CLN3-243ENST00000635973 FPGT-TNNI3KV9GXZ4 949 aa22.25■■□□□ 1.15
CLN3-243ENST00000635973 RAB11FIP3O75154 756 aa22.24■■□□□ 1.15
CLN3-243ENST00000635973 SPDYE2Q495Y8 402 aa22.24■■□□□ 1.15
CLN3-243ENST00000635973 NBPF12Q5TAG4 269 aaPredicted RBP22.24■■□□□ 1.15
CLN3-243ENST00000635973 KIF1BPQ96EK5 621 aa22.24■■□□□ 1.15
CLN3-243ENST00000635973 XAGE2Q96GT9 111 aa22.24■■□□□ 1.15
CLN3-243ENST00000635973 GPR108Q9NPR9 543 aa22.24■■□□□ 1.15
CLN3-243ENST00000635973 TBC1D8O95759 1140 aa22.23■■□□□ 1.15
CLN3-243ENST00000635973 MAP3K11Q16584 847 aa22.23■■□□□ 1.15
CLN3-243ENST00000635973 SPRYD7Q5W111 196 aa22.23■■□□□ 1.15
CLN3-243ENST00000635973 RHPN1Q8TCX5 695 aa22.23■■□□□ 1.15
CLN3-243ENST00000635973 TEKT1Q969V4 418 aa22.23■■□□□ 1.15
CLN3-243ENST00000635973 UNCXA6NJT0 531 aa22.22■■□□□ 1.15
CLN3-243ENST00000635973 PHKA1P46020 1223 aa22.22■■□□□ 1.15
CLN3-243ENST00000635973 HDLBPQ00341 1268 aaKnown RBP22.22■■□□□ 1.15
CLN3-243ENST00000635973 IL1RAPL2Q9NP60 686 aa22.22■■□□□ 1.15
CLN3-243ENST00000635973 TMOD2Q9NZR1 351 aa22.22■■□□□ 1.15
CLN3-243ENST00000635973 MAST3O60307 1309 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms