RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 CLASRPQ8N2M8 674 aaKnown RBP25.42■■□□□ 1.66
CLN3-240ENST00000631023 TEKT1Q969V4 418 aa25.42■■□□□ 1.66
CLN3-240ENST00000631023 EAF2Q96CJ1 260 aaPredicted RBP25.42■■□□□ 1.66
CLN3-240ENST00000631023 AAMPQ13685 434 aa25.41■■□□□ 1.66
CLN3-240ENST00000631023 APOBEC3FQ8IUX4 373 aaKnown RBP25.41■■□□□ 1.66
CLN3-240ENST00000631023 PRMT6Q96LA8 375 aaPredicted RBP25.41■■□□□ 1.66
CLN3-240ENST00000631023 CCDC8Q9H0W5 538 aaPredicted RBP25.41■■□□□ 1.66
CLN3-240ENST00000631023 AKAP11Q9UKA4 1901 aa25.41■■□□□ 1.66
CLN3-240ENST00000631023 MYH2Q9UKX2 1941 aa25.41■■□□□ 1.66
CLN3-240ENST00000631023 ADM5C9JUS6 153 aa25.4■■□□□ 1.66
CLN3-240ENST00000631023 CELF2O95319 508 aaKnown RBP25.4■■□□□ 1.66
CLN3-240ENST00000631023 SPTY2D1Q68D10 685 aaPredicted RBP25.4■■□□□ 1.66
CLN3-240ENST00000631023 AACSQ86V21 672 aa25.4■■□□□ 1.66
CLN3-240ENST00000631023 IL1RAPL2Q9NP60 686 aa25.4■■□□□ 1.66
CLN3-240ENST00000631023 DBNLQ9UJU6 430 aaKnown RBP25.4■■□□□ 1.66
CLN3-240ENST00000631023 SPATA5Q8NB90 893 aa25.39■■□□□ 1.66
CLN3-240ENST00000631023 ZNF408Q9H9D4 720 aa25.39■■□□□ 1.66
CLN3-240ENST00000631023 PCDHAC2Q9Y5I4 1007 aa25.39■■□□□ 1.66
CLN3-240ENST00000631023 CST9Q5W186 159 aa25.39■■□□□ 1.65
CLN3-240ENST00000631023 HHIPL2Q6UWX4 724 aa25.39■■□□□ 1.65
CLN3-240ENST00000631023 ZNF512BQ96KM6 892 aaPredicted RBP25.39■■□□□ 1.65
CLN3-240ENST00000631023 HMG20BQ9P0W2 317 aa25.39■■□□□ 1.65
CLN3-240ENST00000631023 ABCF2Q9UG63 623 aa25.39■■□□□ 1.65
CLN3-240ENST00000631023 PCDHB15Q9Y5E8 787 aa25.39■■□□□ 1.65
CLN3-240ENST00000631023 PRDX5P30044 214 aa25.38■■□□□ 1.65
CLN3-240ENST00000631023 MCAMP43121 646 aa25.37■■□□□ 1.65
CLN3-240ENST00000631023 ZDHHC15Q96MV8 337 aa25.37■■□□□ 1.65
CLN3-240ENST00000631023 DCTPP1Q9H773 170 aa25.37■■□□□ 1.65
CLN3-240ENST00000631023 ABT1Q9ULW3 272 aaKnown RBP25.37■■□□□ 1.65
CLN3-240ENST00000631023 DNAJC5GQ8N7S2 189 aa25.36■■□□□ 1.65
CLN3-240ENST00000631023 LRRCC1Q9C099 1032 aa25.36■■□□□ 1.65
CLN3-240ENST00000631023 TLR7Q9NYK1 1049 aaKnown RBP25.36■■□□□ 1.65
CLN3-240ENST00000631023 CLRN2A0PK11 232 aa25.35■■□□□ 1.65
CLN3-240ENST00000631023 IFIT2P09913 472 aaKnown RBP25.35■■□□□ 1.65
CLN3-240ENST00000631023 DLK2Q6UY11 383 aa25.35■■□□□ 1.65
CLN3-240ENST00000631023 ERICH6Q7L0X2 663 aa25.35■■□□□ 1.65
CLN3-240ENST00000631023 CDCA5Q96FF9 252 aa25.35■■□□□ 1.65
CLN3-240ENST00000631023 DZIP1Q86YF9 867 aaKnown RBP25.35■■□□□ 1.65
CLN3-240ENST00000631023 SLF2Q8IX21 1173 aa25.35■■□□□ 1.65
CLN3-240ENST00000631023 VEZTQ9HBM0 779 aa25.35■■□□□ 1.65
CLN3-240ENST00000631023 SCAF8Q9UPN6 1271 aaKnown RBP25.35■■□□□ 1.65
CLN3-240ENST00000631023 TNFAIP1Q13829 316 aa25.34■■□□□ 1.65
CLN3-240ENST00000631023 SPDYE2Q495Y8 402 aa25.34■■□□□ 1.65
CLN3-240ENST00000631023 PI16Q6UXB8 463 aa25.34■■□□□ 1.65
CLN3-240ENST00000631023 C2orf69Q8N8R5 385 aa25.34■■□□□ 1.65
CLN3-240ENST00000631023 KLRG1Q96E93 195 aa25.34■■□□□ 1.65
CLN3-240ENST00000631023 BCL11AQ9H165 835 aa25.34■■□□□ 1.65
CLN3-240ENST00000631023 TDRD3Q9H7E2 651 aaKnown RBP25.34■■□□□ 1.65
CLN3-240ENST00000631023 ZNF70Q9UC06 446 aaPredicted RBP25.34■■□□□ 1.65
CLN3-240ENST00000631023 DEFB129Q9H1M3 183 aa25.33■■□□□ 1.65
CLN3-240ENST00000631023 PPP2R3BQ9Y5P8 575 aa25.33■■□□□ 1.65
CLN3-240ENST00000631023 MYO5AQ9Y4I1 1855 aaKnown RBP25.33■■□□□ 1.65
CLN3-240ENST00000631023 DEFB115Q30KQ5 88 aa25.32■■□□□ 1.64
CLN3-240ENST00000631023 GBA2Q9HCG7 927 aaPredicted RBP25.32■■□□□ 1.64
CLN3-240ENST00000631023 SNRKQ9NRH2 765 aa25.32■■□□□ 1.64
CLN3-240ENST00000631023 TMOD2Q9NZR1 351 aa25.32■■□□□ 1.64
CLN3-240ENST00000631023 NF2P35240 595 aa25.31■■□□□ 1.64
CLN3-240ENST00000631023 DIXDC1Q155Q3 683 aa25.31■■□□□ 1.64
CLN3-240ENST00000631023 APOBEC3HQ6NTF7 200 aaKnown RBP25.31■■□□□ 1.64
CLN3-240ENST00000631023 LRP2BPQ9P2M1 347 aa25.31■■□□□ 1.64
CLN3-240ENST00000631023 MKRN1Q9UHC7 482 aaKnown RBP25.31■■□□□ 1.64
CLN3-240ENST00000631023 TLL2Q9Y6L7 1015 aa25.31■■□□□ 1.64
CLN3-240ENST00000631023 AOX1Q06278 1338 aa25.31■■□□□ 1.64
CLN3-240ENST00000631023 AK9Q5TCS8 1911 aa25.31■■□□□ 1.64
CLN3-240ENST00000631023 RASSF10A6NK89 507 aa25.31■■□□□ 1.64
CLN3-240ENST00000631023 TBC1D9Q6ZT07 1266 aa25.31■■□□□ 1.64
CLN3-240ENST00000631023 TNNI2P48788 182 aa25.3■■□□□ 1.64
CLN3-240ENST00000631023 GSTO1P78417 241 aa25.3■■□□□ 1.64
CLN3-240ENST00000631023 PRAMEF18Q5VWM3 479 aa25.3■■□□□ 1.64
CLN3-240ENST00000631023 SAPCD2Q86UD0 394 aa25.3■■□□□ 1.64
CLN3-240ENST00000631023 RAI14Q9P0K7 980 aa25.3■■□□□ 1.64
CLN3-240ENST00000631023 DAGLAQ9Y4D2 1042 aa25.3■■□□□ 1.64
CLN3-240ENST00000631023 CNTNAP1P78357 1384 aa25.3■■□□□ 1.64
CLN3-240ENST00000631023 IGSF3O75054 1194 aa25.28■■□□□ 1.64
CLN3-240ENST00000631023 LDHCP07864 332 aa25.28■■□□□ 1.64
CLN3-240ENST00000631023 ZAP70P43403 619 aa25.28■■□□□ 1.64
CLN3-240ENST00000631023 FKBP1BP68106 108 aa25.28■■□□□ 1.64
CLN3-240ENST00000631023 MECOMQ03112 1051 aa25.28■■□□□ 1.64
CLN3-240ENST00000631023 EXOC6Q8TAG9 804 aa25.28■■□□□ 1.64
CLN3-240ENST00000631023 FAM163AQ96GL9 167 aaPredicted RBP25.28■■□□□ 1.64
CLN3-240ENST00000631023 CYP2E1P05181 493 aaPredicted RBP25.27■■□□□ 1.64
CLN3-240ENST00000631023 HDAC1Q13547 482 aaPredicted RBP25.27■■□□□ 1.64
CLN3-240ENST00000631023 RASA3Q14644 834 aa25.27■■□□□ 1.64
CLN3-240ENST00000631023 HHIPL1Q96JK4 782 aa25.27■■□□□ 1.64
CLN3-240ENST00000631023 TCP10L2B9ZVM9 353 aa25.27■■□□□ 1.64
CLN3-240ENST00000631023 SMARCA5O60264 1052 aaPredicted RBP25.27■■□□□ 1.64
CLN3-240ENST00000631023 HUNKP57058 714 aa25.27■■□□□ 1.64
CLN3-240ENST00000631023 SUPT20HL1Q3ZLR7 823 aa25.27■■□□□ 1.64
CLN3-240ENST00000631023 FKBP1CQ5VVH2 108 aa25.27■■□□□ 1.64
CLN3-240ENST00000631023 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.27■■□□□ 1.64
CLN3-240ENST00000631023 PAPPA2Q9BXP8 1791 aa25.26■■□□□ 1.63
CLN3-240ENST00000631023 PAXIP1Q6ZW49 1069 aaPredicted RBP25.26■■□□□ 1.63
CLN3-240ENST00000631023 NSUN4Q96CB9 384 aaKnown RBP25.26■■□□□ 1.63
CLN3-240ENST00000631023 GAKO14976 1311 aa25.25■■□□□ 1.63
CLN3-240ENST00000631023 ECE1P42892 770 aa25.25■■□□□ 1.63
CLN3-240ENST00000631023 TTLL12Q14166 644 aaPredicted RBP25.25■■□□□ 1.63
CLN3-240ENST00000631023 CDC42EP5Q6NZY7 148 aa25.25■■□□□ 1.63
CLN3-240ENST00000631023 ZBTB47Q9UFB7 747 aaPredicted RBP25.25■■□□□ 1.63
CLN3-240ENST00000631023 FAM83AQ86UY5 434 aa25.24■■□□□ 1.63
CLN3-240ENST00000631023 GCC1Q96CN9 775 aa25.24■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms