RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CCDC102BQ68D86 513 aa22.21■■□□□ 1.15
CLN3-239ENST00000628023 MFSD14BQ5SR56 506 aa22.2■■□□□ 1.14
CLN3-239ENST00000628023 RGMBQ6NW40 437 aa22.2■■□□□ 1.14
CLN3-239ENST00000628023 AACSQ86V21 672 aa22.2■■□□□ 1.14
CLN3-239ENST00000628023 CLASRPQ8N2M8 674 aaKnown RBP22.2■■□□□ 1.14
CLN3-239ENST00000628023 CCDC102AQ96A19 550 aa22.2■■□□□ 1.14
CLN3-239ENST00000628023 FAM205AQ6ZU69 1335 aa22.2■■□□□ 1.14
CLN3-239ENST00000628023 SCARF1Q14162 830 aa22.19■■□□□ 1.14
CLN3-239ENST00000628023 CCDC158Q5M9N0 1113 aa22.19■■□□□ 1.14
CLN3-239ENST00000628023 DLK2Q6UY11 383 aa22.19■■□□□ 1.14
CLN3-239ENST00000628023 KIAA0825Q8IV33 1275 aa22.19■■□□□ 1.14
CLN3-239ENST00000628023 OGFOD1Q8N543 542 aa22.19■■□□□ 1.14
CLN3-239ENST00000628023 LRRCC1Q9C099 1032 aa22.19■■□□□ 1.14
CLN3-239ENST00000628023 CCDC8Q9H0W5 538 aaPredicted RBP22.19■■□□□ 1.14
CLN3-239ENST00000628023 MYOZ2Q9NPC6 264 aa22.19■■□□□ 1.14
CLN3-239ENST00000628023 MYH13Q9UKX3 1938 aa22.19■■□□□ 1.14
CLN3-239ENST00000628023 SEMA3EO15041 775 aa22.18■■□□□ 1.14
CLN3-239ENST00000628023 TTC39AQ5SRH9 613 aa22.18■■□□□ 1.14
CLN3-239ENST00000628023 ANGEL2Q5VTE6 544 aaKnown RBP22.18■■□□□ 1.14
CLN3-239ENST00000628023 TBC1D22AQ8WUA7 517 aa22.18■■□□□ 1.14
CLN3-239ENST00000628023 EAF2Q96CJ1 260 aaPredicted RBP22.18■■□□□ 1.14
CLN3-239ENST00000628023 GMLQ99445 158 aa22.18■■□□□ 1.14
CLN3-239ENST00000628023 DBNDD2Q9BQY9 259 aa22.18■■□□□ 1.14
CLN3-239ENST00000628023 DCTPP1Q9H773 170 aa22.18■■□□□ 1.14
CLN3-239ENST00000628023 HDAC9Q9UKV0 1011 aa22.18■■□□□ 1.14
CLN3-239ENST00000628023 DENND2AQ9ULE3 1009 aa22.18■■□□□ 1.14
CLN3-239ENST00000628023 ZNF646O15015 1829 aaPredicted RBP22.17■■□□□ 1.14
CLN3-239ENST00000628023 F8W031 263 aaPredicted RBP22.17■■□□□ 1.14
CLN3-239ENST00000628023 IFIT2P09913 472 aaKnown RBP22.17■■□□□ 1.14
CLN3-239ENST00000628023 ZNF157P51786 506 aaPredicted RBP22.17■■□□□ 1.14
CLN3-239ENST00000628023 FKBP1AP62942 108 aaKnown RBP22.17■■□□□ 1.14
CLN3-239ENST00000628023 TSKSQ9UJT2 592 aa22.17■■□□□ 1.14
CLN3-239ENST00000628023 HDAC1Q13547 482 aaPredicted RBP22.16■■□□□ 1.14
CLN3-239ENST00000628023 RASGRF1Q13972 1273 aa22.16■■□□□ 1.14
CLN3-239ENST00000628023 CERS5Q8N5B7 392 aa22.16■■□□□ 1.14
CLN3-239ENST00000628023 WDR66Q8TBY9 1149 aa22.16■■□□□ 1.14
CLN3-239ENST00000628023 CDCA5Q96FF9 252 aa22.16■■□□□ 1.14
CLN3-239ENST00000628023 ABHD8Q96I13 439 aa22.16■■□□□ 1.14
CLN3-239ENST00000628023 RWDD1Q9H446 243 aaPredicted RBP22.16■■□□□ 1.14
CLN3-239ENST00000628023 TLR7Q9NYK1 1049 aaKnown RBP22.16■■□□□ 1.14
CLN3-239ENST00000628023 ZBTB47Q9UFB7 747 aaPredicted RBP22.16■■□□□ 1.14
CLN3-239ENST00000628023 DBNLQ9UJU6 430 aaKnown RBP22.16■■□□□ 1.14
CLN3-239ENST00000628023 COL1A1P02452 1464 aaPredicted RBP22.15■■□□□ 1.14
CLN3-239ENST00000628023 PITPNM2Q9BZ72 1349 aa22.15■■□□□ 1.14
CLN3-239ENST00000628023 UQCRFS1P1P0C7P4 283 aa22.15■■□□□ 1.14
CLN3-239ENST00000628023 MMP14P50281 582 aa22.15■■□□□ 1.14
CLN3-239ENST00000628023 ASTN2O75129 1339 aaPredicted RBP22.14■■□□□ 1.14
CLN3-239ENST00000628023 SMARCA5O60264 1052 aaPredicted RBP22.14■■□□□ 1.13
CLN3-239ENST00000628023 NEFLP07196 543 aa22.13■■□□□ 1.13
CLN3-239ENST00000628023 ARID4AP29374 1257 aaPredicted RBP22.13■■□□□ 1.13
CLN3-239ENST00000628023 FKBP1BP68106 108 aa22.13■■□□□ 1.13
CLN3-239ENST00000628023 TTF2Q9UNY4 1162 aaKnown RBP22.13■■□□□ 1.13
CLN3-239ENST00000628023 ZGPATQ8N5A5 531 aaKnown RBP22.12■■□□□ 1.13
CLN3-239ENST00000628023 GCC1Q96CN9 775 aa22.12■■□□□ 1.13
CLN3-239ENST00000628023 PDS5AQ29RF7 1337 aaKnown RBP22.11■■□□□ 1.13
CLN3-239ENST00000628023 FAM155AB1AL88 458 aaPredicted RBP22.11■■□□□ 1.13
CLN3-239ENST00000628023 RBM5P52756 815 aaKnown RBP eCLIP22.11■■□□□ 1.13
CLN3-239ENST00000628023 SPATA5Q8NB90 893 aa22.11■■□□□ 1.13
CLN3-239ENST00000628023 MAST3O60307 1309 aa22.1■■□□□ 1.13
CLN3-239ENST00000628023 NF2P35240 595 aa22.1■■□□□ 1.13
CLN3-239ENST00000628023 MCAMP43121 646 aa22.1■■□□□ 1.13
CLN3-239ENST00000628023 KIF23Q02241 960 aaPredicted RBP22.1■■□□□ 1.13
CLN3-239ENST00000628023 PI16Q6UXB8 463 aa22.1■■□□□ 1.13
CLN3-239ENST00000628023 REM2Q8IYK8 340 aaPredicted RBP22.1■■□□□ 1.13
CLN3-239ENST00000628023 ZIC5Q96T25 663 aa22.1■■□□□ 1.13
CLN3-239ENST00000628023 HMG20BQ9P0W2 317 aa22.1■■□□□ 1.13
CLN3-239ENST00000628023 SUGT1Q9Y2Z0 365 aa22.1■■□□□ 1.13
CLN3-239ENST00000628023 ZBTB22O15209 634 aa22.09■■□□□ 1.13
CLN3-239ENST00000628023 SLC10A3P09131 477 aa22.09■■□□□ 1.13
CLN3-239ENST00000628023 NBPF9Q3BBW0 867 aa22.09■■□□□ 1.13
CLN3-239ENST00000628023 SNRKQ9NRH2 765 aa22.09■■□□□ 1.13
CLN3-239ENST00000628023 SAGE1Q9NXZ1 904 aa22.09■■□□□ 1.13
CLN3-239ENST00000628023 ABCF2Q9UG63 623 aa22.09■■□□□ 1.13
CLN3-239ENST00000628023 SALL1Q9NSC2 1324 aa22.08■■□□□ 1.13
CLN3-239ENST00000628023 LDHBP07195 334 aaKnown RBP22.08■■□□□ 1.13
CLN3-239ENST00000628023 DLGAP5Q15398 846 aa22.08■■□□□ 1.13
CLN3-239ENST00000628023 GRIK5Q16478 980 aa22.08■■□□□ 1.13
CLN3-239ENST00000628023 GPATCH3Q96I76 525 aa22.08■■□□□ 1.13
CLN3-239ENST00000628023 ZNF512BQ96KM6 892 aaPredicted RBP22.08■■□□□ 1.13
CLN3-239ENST00000628023 WNT10BO00744 389 aa22.07■■□□□ 1.12
CLN3-239ENST00000628023 CFAP100Q494V2 611 aa22.07■■□□□ 1.12
CLN3-239ENST00000628023 ANKRD45Q5TZF3 282 aa22.07■■□□□ 1.12
CLN3-239ENST00000628023 SPTY2D1Q68D10 685 aaPredicted RBP22.07■■□□□ 1.12
CLN3-239ENST00000628023 CCDC85CA6NKD9 419 aa22.06■■□□□ 1.12
CLN3-239ENST00000628023 IGHDP01880 384 aa22.06■■□□□ 1.12
CLN3-239ENST00000628023 PRDX5P30044 214 aa22.06■■□□□ 1.12
CLN3-239ENST00000628023 CRKP46108 304 aa22.06■■□□□ 1.12
CLN3-239ENST00000628023 TTLL12Q14166 644 aaPredicted RBP22.06■■□□□ 1.12
CLN3-239ENST00000628023 DZIP1Q86YF9 867 aaKnown RBP22.06■■□□□ 1.12
CLN3-239ENST00000628023 TEKT1Q969V4 418 aa22.06■■□□□ 1.12
CLN3-239ENST00000628023 SERPINA10Q9UK55 444 aa22.06■■□□□ 1.12
CLN3-239ENST00000628023 CASP8AP2Q9UKL3 1982 aa22.06■■□□□ 1.12
CLN3-239ENST00000628023 MYO1BO43795 1136 aa22.05■■□□□ 1.12
CLN3-239ENST00000628023 B4GALNT3Q6L9W6 998 aa22.05■■□□□ 1.12
CLN3-239ENST00000628023 ERICH6Q7L0X2 663 aa22.05■■□□□ 1.12
CLN3-239ENST00000628023 TRPA1O75762 1119 aa22.04■■□□□ 1.12
CLN3-239ENST00000628023 ZAP70P43403 619 aa22.04■■□□□ 1.12
CLN3-239ENST00000628023 DGKZQ13574 1117 aa22.04■■□□□ 1.12
CLN3-239ENST00000628023 TBC1D9Q6ZT07 1266 aa22.04■■□□□ 1.12
CLN3-239ENST00000628023 APOBEC3FQ8IUX4 373 aaKnown RBP22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms