RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 ABCB6Q9NP58 842 aa9.05□□□□□ -0.96
VPS11-209ENST00000622309 L1RE1Q9UN81 338 aa9.05□□□□□ -0.96
VPS11-209ENST00000622309 PIK3R4Q99570 1358 aa9.05□□□□□ -0.96
VPS11-209ENST00000622309 ECEL1O95672 775 aa9.05□□□□□ -0.96
VPS11-209ENST00000622309 MYBL2P10244 700 aa9.05□□□□□ -0.96
VPS11-209ENST00000622309 KDM4CQ9H3R0 1056 aa9.05□□□□□ -0.96
VPS11-209ENST00000622309 IFNKQ9P0W0 207 aa9.05□□□□□ -0.96
VPS11-209ENST00000622309 SSH2Q76I76 1423 aa9.05□□□□□ -0.96
VPS11-209ENST00000622309 MYO1FO00160 1098 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 FYB1O15117 783 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 HMMRO75330 724 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 PDCP20941 246 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 LTKP29376 864 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 CDR1P51861 262 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 MRPL12P52815 198 aaKnown RBP9.04□□□□□ -0.96
VPS11-209ENST00000622309 GRIK3Q13003 919 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 PROSER2Q86WR7 435 aaPredicted RBP9.04□□□□□ -0.96
VPS11-209ENST00000622309 LEO1Q8WVC0 666 aaPredicted RBP9.04□□□□□ -0.96
VPS11-209ENST00000622309 BAG1Q99933 345 aaPredicted RBP9.04□□□□□ -0.96
VPS11-209ENST00000622309 XPO4Q9C0E2 1151 aaKnown RBP9.04□□□□□ -0.96
VPS11-209ENST00000622309 SHPRHQ149N8 1683 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 MSH6P52701 1360 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 SPATA31A6Q5VVP1 1343 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 GOLGA6L9A6NEM1 432 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 RAB11FIP3O75154 756 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 EZRP15311 586 aaKnown RBP9.04□□□□□ -0.96
VPS11-209ENST00000622309 HSPA4P34932 840 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 PSMD2Q13200 908 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 TSHZ3Q63HK5 1081 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 HDGFL2Q7Z4V5 671 aaPredicted RBP9.04□□□□□ -0.96
VPS11-209ENST00000622309 DHX40Q8IX18 779 aaKnown RBP9.04□□□□□ -0.96
VPS11-209ENST00000622309 THUMPD2Q9BTF0 503 aaKnown RBP9.04□□□□□ -0.96
VPS11-209ENST00000622309 SUGCTQ9HAC7 445 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 SETD1AO15047 1707 aaKnown RBP9.04□□□□□ -0.96
VPS11-209ENST00000622309 WDHD1O75717 1129 aaPredicted RBP9.04□□□□□ -0.96
VPS11-209ENST00000622309 CEP85LQ5SZL2 805 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 ZSCAN31Q96LW9 406 aaPredicted RBP9.04□□□□□ -0.96
VPS11-209ENST00000622309 OSBPL3Q9H4L5 887 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 ZRANB1Q9UGI0 708 aa9.04□□□□□ -0.96
VPS11-209ENST00000622309 TTC21AQ8NDW8 1320 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 RGL2O15211 777 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 VAMP4O75379 141 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 AP1G2O75843 785 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 HMOX1P09601 288 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 PEX19P40855 299 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 KIAA1328Q86T90 577 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 BCAS4Q8TDM0 211 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 THOC1Q96FV9 657 aaKnown RBP9.03□□□□□ -0.96
VPS11-209ENST00000622309 KIF9Q9HAQ2 790 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 SH2B1Q9NRF2 756 aaPredicted RBP9.03□□□□□ -0.96
VPS11-209ENST00000622309 PUF60Q9UHX1 559 aaKnown RBP9.03□□□□□ -0.96
VPS11-209ENST00000622309 TMEM2Q9UHN6 1383 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 ARHGEF28Q8N1W1 1705 aaKnown RBP9.03□□□□□ -0.96
VPS11-209ENST00000622309 SOS1Q07889 1333 aaPredicted RBP9.03□□□□□ -0.96
VPS11-209ENST00000622309 GBP2P32456 591 aaPredicted RBP9.03□□□□□ -0.96
VPS11-209ENST00000622309 USP5P45974 858 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 CCDC12Q8WUD4 166 aaPredicted RBP9.03□□□□□ -0.96
VPS11-209ENST00000622309 KCNB2Q92953 911 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 DHX58Q96C10 678 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 PTCH1Q13635 1447 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 SNUPNO95149 360 aaKnown RBP9.03□□□□□ -0.96
VPS11-209ENST00000622309 ICA1Q05084 483 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 MEX3CQ5U5Q3 659 aaKnown RBP9.03□□□□□ -0.96
VPS11-209ENST00000622309 CEP85Q6P2H3 762 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 CDC37L1Q7L3B6 337 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 SRGAP1Q7Z6B7 1085 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 AMOTL1Q8IY63 956 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 IL17RAQ96F46 866 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 TTC14Q96N46 770 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 WDR24Q96S15 920 aa9.03□□□□□ -0.96
VPS11-209ENST00000622309 PHLPP1O60346 1717 aa9.02□□□□□ -0.97
VPS11-209ENST00000622309 RIMS2Q9UQ26 1411 aa9.02□□□□□ -0.97
VPS11-209ENST00000622309 FANCGO15287 622 aa9.02□□□□□ -0.97
VPS11-209ENST00000622309 KINO60870 393 aaKnown RBP9.02□□□□□ -0.97
VPS11-209ENST00000622309 IFIT2P09913 472 aaKnown RBP9.02□□□□□ -0.97
VPS11-209ENST00000622309 TUBB4BP68371 445 aa9.02□□□□□ -0.97
VPS11-209ENST00000622309 ACTN3Q08043 901 aaPredicted RBP9.02□□□□□ -0.97
VPS11-209ENST00000622309 CCDC73Q6ZRK6 1079 aa9.02□□□□□ -0.97
VPS11-209ENST00000622309 B4GALNT4Q76KP1 1039 aa9.02□□□□□ -0.97
VPS11-209ENST00000622309 RABEP2Q9H5N1 569 aa9.02□□□□□ -0.97
VPS11-209ENST00000622309 TMEM131LA2VDJ0 1609 aa9.02□□□□□ -0.97
VPS11-209ENST00000622309 SKAP2O75563 359 aaPredicted RBP9.02□□□□□ -0.97
VPS11-209ENST00000622309 LARGE1O95461 756 aa9.02□□□□□ -0.97
VPS11-209ENST00000622309 RHOXF2BP0C7M4 288 aa9.02□□□□□ -0.97
VPS11-209ENST00000622309 RPUSD2Q8IZ73 545 aaKnown RBP9.02□□□□□ -0.97
VPS11-209ENST00000622309 FAM76AQ8TAV0 307 aa9.02□□□□□ -0.97
VPS11-209ENST00000622309 FMNL2Q96PY5 1086 aa9.02□□□□□ -0.97
VPS11-209ENST00000622309 RHOXF2Q9BQY4 288 aa9.02□□□□□ -0.97
VPS11-209ENST00000622309 KLC4Q9NSK0 619 aa9.02□□□□□ -0.97
VPS11-209ENST00000622309 RAB21Q9UL25 225 aa9.02□□□□□ -0.97
VPS11-209ENST00000622309 MYO6Q9UM54 1294 aa9.02□□□□□ -0.97
VPS11-209ENST00000622309 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.02□□□□□ -0.97
VPS11-209ENST00000622309 SNX14Q9Y5W7 946 aa9.02□□□□□ -0.97
VPS11-209ENST00000622309 CDK12Q9NYV4 1490 aaPredicted RBP9.02□□□□□ -0.97
VPS11-209ENST00000622309 EME2A4GXA9 379 aaPredicted RBP9.01□□□□□ -0.97
VPS11-209ENST00000622309 RTN2O75298 545 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 FCHSD1Q86WN1 690 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 TEX13AQ9BXU3 409 aaPredicted RBP9.01□□□□□ -0.97
VPS11-209ENST00000622309 LRRCC1Q9C099 1032 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 SLAIN2Q9P270 581 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms