RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 DHX40Q8IX18 779 aaKnown RBP15.05■□□□□ -0
CCDC88A-214ENST00000621814 AIDAQ96BJ3 306 aa15.05■□□□□ -0
CCDC88A-214ENST00000621814 MAP7D2Q96T17 732 aa15.05■□□□□ -0
CCDC88A-214ENST00000621814 COL5A2P05997 1499 aaPredicted RBP15.05■□□□□ -0
CCDC88A-214ENST00000621814 MAP3K15Q6ZN16 1313 aa15.05■□□□□ -0
CCDC88A-214ENST00000621814 CSF1RP07333 972 aa15.04■□□□□ -0
CCDC88A-214ENST00000621814 DPCR1Q3MIW9 517 aa15.04■□□□□ -0
CCDC88A-214ENST00000621814 MYSM1Q5VVJ2 828 aa15.04■□□□□ -0
CCDC88A-214ENST00000621814 CCDC102BQ68D86 513 aa15.04■□□□□ -0
CCDC88A-214ENST00000621814 ADALQ6DHV7 355 aa15.04■□□□□ -0
CCDC88A-214ENST00000621814 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.04■□□□□ -0
CCDC88A-214ENST00000621814 ZMYND15Q9H091 742 aa15.04■□□□□ -0
CCDC88A-214ENST00000621814 PRDM10Q9NQV6 1147 aa15.04■□□□□ -0
CCDC88A-214ENST00000621814 RTEL1Q9NZ71 1219 aa15.04■□□□□ -0
CCDC88A-214ENST00000621814 SMC2O95347 1197 aa15.04■□□□□ -0
CCDC88A-214ENST00000621814 CTDSPL2Q05D32 466 aa15.04■□□□□ -0
CCDC88A-214ENST00000621814 ZKSCAN3Q9BRR0 538 aa15.04■□□□□ -0
CCDC88A-214ENST00000621814 ALG1Q9BT22 464 aa15.04■□□□□ -0
CCDC88A-214ENST00000621814 KCPQ6ZWJ8 1503 aa15.04■□□□□ -0
CCDC88A-214ENST00000621814 ZNF335Q9H4Z2 1342 aaPredicted RBP15.04■□□□□ -0
CCDC88A-214ENST00000621814 FMR1NBQ8N0W7 255 aaPredicted RBP15.03■□□□□ -0
CCDC88A-214ENST00000621814 IQSEC3Q9UPP2 1182 aaPredicted RBP15.03■□□□□ -0
CCDC88A-214ENST00000621814 USP27XA6NNY8 438 aa15.03■□□□□ -0
CCDC88A-214ENST00000621814 SKILP12757 684 aa15.03■□□□□ -0
CCDC88A-214ENST00000621814 ADD2P35612 726 aa15.03■□□□□ -0
CCDC88A-214ENST00000621814 SLC4A9Q96Q91 983 aa15.03■□□□□ -0
CCDC88A-214ENST00000621814 NBPF3Q9H094 633 aa15.03■□□□□ -0
CCDC88A-214ENST00000621814 LRRC8AQ8IWT6 810 aa15.03■□□□□ -0
CCDC88A-214ENST00000621814 NAT10Q9H0A0 1025 aaKnown RBP15.03■□□□□ -0
CCDC88A-214ENST00000621814 ZNF202O95125 648 aa15.02■□□□□ -0
CCDC88A-214ENST00000621814 PDE8BO95263 885 aa15.02■□□□□ -0
CCDC88A-214ENST00000621814 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.02■□□□□ -0
CCDC88A-214ENST00000621814 DZIP3Q86Y13 1208 aaKnown RBP15.02■□□□□ -0
CCDC88A-214ENST00000621814 MAGEB6Q8N7X4 407 aa15.02■□□□□ -0
CCDC88A-214ENST00000621814 TEX13AQ9BXU3 409 aaPredicted RBP15.02■□□□□ -0
CCDC88A-214ENST00000621814 ANGEL1Q9UNK9 670 aaKnown RBP15.02■□□□□ -0
CCDC88A-214ENST00000621814 PDE6AP16499 860 aa15.02□□□□□ -0.01
CCDC88A-214ENST00000621814 CDC27P30260 824 aa15.02□□□□□ -0.01
CCDC88A-214ENST00000621814 ANO1Q5XXA6 986 aa15.02□□□□□ -0.01
CCDC88A-214ENST00000621814 CMTR1Q8N1G2 835 aaKnown RBP15.02□□□□□ -0.01
CCDC88A-214ENST00000621814 KLHL34Q8N239 644 aa15.02□□□□□ -0.01
CCDC88A-214ENST00000621814 KCNG4Q8TDN1 519 aa15.02□□□□□ -0.01
CCDC88A-214ENST00000621814 STRCP1A6NGW2 1772 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 CCDC69A6NI79 296 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 CAVIN2O95810 425 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 SLC3A2P08195 630 aaKnown RBP15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 ATP2B1P20020 1258 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 DCCP43146 1447 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 CBX1P83916 185 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 TRIM28Q13263 835 aaKnown RBP15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 NAA30Q147X3 362 aaPredicted RBP15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 PTPN21Q16825 1174 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 SPECC1Q5M775 1068 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 PPP4R3BQ5MIZ7 849 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 CHMP4CQ96CF2 233 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 ARMT1Q9H993 441 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 SPDYE4A6NLX3 237 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 ATL3Q6DD88 541 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 KIAA1468Q9P260 1216 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 GLI3P10071 1580 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 NEDD4P46934 1319 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 WDHD1O75717 1129 aaPredicted RBP15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 PFKFB1P16118 471 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 KIF23Q02241 960 aaPredicted RBP15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 TMEM67Q5HYA8 995 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 MIGA1Q8NAN2 632 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 CLIC6Q96NY7 704 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 MPHOSPH8Q99549 860 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 SEC31BQ9NQW1 1179 aa15.01□□□□□ -0.01
CCDC88A-214ENST00000621814 SOS2Q07890 1332 aaPredicted RBP15□□□□□ -0.01
CCDC88A-214ENST00000621814 PKD1L3Q7Z443 1732 aa15□□□□□ -0.01
CCDC88A-214ENST00000621814 PRKAB2O43741 272 aa15□□□□□ -0.01
CCDC88A-214ENST00000621814 MBD4O95243 580 aa15□□□□□ -0.01
CCDC88A-214ENST00000621814 HSP90AA4PQ58FG1 418 aa15□□□□□ -0.01
CCDC88A-214ENST00000621814 VPS37DQ86XT2 251 aa15□□□□□ -0.01
CCDC88A-214ENST00000621814 SLC26A6Q9BXS9 759 aa15□□□□□ -0.01
CCDC88A-214ENST00000621814 NAPBQ9H115 298 aa15□□□□□ -0.01
CCDC88A-214ENST00000621814 LAMA4Q16363 1823 aa15□□□□□ -0.01
CCDC88A-214ENST00000621814 IFIT3O14879 490 aaKnown RBP15□□□□□ -0.01
CCDC88A-214ENST00000621814 CYP19A1P11511 503 aaPredicted RBP15□□□□□ -0.01
CCDC88A-214ENST00000621814 LMOD1P29536 600 aaPredicted RBP15□□□□□ -0.01
CCDC88A-214ENST00000621814 EVCP57679 992 aa15□□□□□ -0.01
CCDC88A-214ENST00000621814 TTF1Q15361 905 aaPredicted RBP15□□□□□ -0.01
CCDC88A-214ENST00000621814 KRT40Q6A162 431 aa15□□□□□ -0.01
CCDC88A-214ENST00000621814 MTERF4Q7Z6M4 381 aaKnown RBP15□□□□□ -0.01
CCDC88A-214ENST00000621814 ACSBG1Q96GR2 724 aa15□□□□□ -0.01
CCDC88A-214ENST00000621814 IFNKQ9P0W0 207 aa15□□□□□ -0.01
CCDC88A-214ENST00000621814 GOLGA8AA7E2F4 631 aa14.99□□□□□ -0.01
CCDC88A-214ENST00000621814 ZBTB43O43298 467 aa14.99□□□□□ -0.01
CCDC88A-214ENST00000621814 PLA2G12BQ9BX93 195 aa14.99□□□□□ -0.01
CCDC88A-214ENST00000621814 POLR3EQ9NVU0 708 aa14.99□□□□□ -0.01
CCDC88A-214ENST00000621814 FBXO3Q9UK99 471 aa14.99□□□□□ -0.01
CCDC88A-214ENST00000621814 IARSP41252 1262 aaKnown RBP14.99□□□□□ -0.01
CCDC88A-214ENST00000621814 TRIM29Q14134 588 aa14.99□□□□□ -0.01
CCDC88A-214ENST00000621814 APOA5Q6Q788 366 aa14.99□□□□□ -0.01
CCDC88A-214ENST00000621814 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.99□□□□□ -0.01
CCDC88A-214ENST00000621814 V9GYY5 206 aaPredicted RBP14.99□□□□□ -0.01
CCDC88A-214ENST00000621814 RIC1Q4ADV7 1423 aa14.99□□□□□ -0.01
CCDC88A-214ENST00000621814 PDE8AO60658 829 aa14.98□□□□□ -0.01
CCDC88A-214ENST00000621814 CPLX2Q6PUV4 134 aaKnown RBP14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms