RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 MAP3K9P80192 1104 aa12.49□□□□□ -0.41
UPF3A-212ENST00000619079 GNL2Q13823 731 aaKnown RBP12.49□□□□□ -0.41
UPF3A-212ENST00000619079 RSRC2Q7L4I2 434 aaKnown RBP12.49□□□□□ -0.41
UPF3A-212ENST00000619079 MYCBPQ99417 103 aaPredicted RBP12.49□□□□□ -0.41
UPF3A-212ENST00000619079 HDAC5Q9UQL6 1122 aa12.49□□□□□ -0.41
UPF3A-212ENST00000619079 JRKLQ9Y4A0 524 aa12.49□□□□□ -0.41
UPF3A-212ENST00000619079 A0A1W2PQ27 194 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 A0A1W2PQ64 194 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 A0A1W2PQD8 194 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 POTEB2H3BUK9 544 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 MYO1BO43795 1136 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 JAK2O60674 1132 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 ME1P48163 572 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 PPP2R3AQ06190 1150 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 NMIQ13287 307 aaPredicted RBP12.48□□□□□ -0.41
UPF3A-212ENST00000619079 MTX1Q13505 466 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 PPM1EQ8WY54 764 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 NCAPGQ9BPX3 1015 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 KIAA1468Q9P260 1216 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 BRWD3Q6RI45 1802 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 PKD1L3Q7Z443 1732 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 IKBKBO14920 756 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 ARHGAP6O43182 974 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 TRIM37O94972 964 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 CEBPZQ03701 1054 aaKnown RBP12.48□□□□□ -0.41
UPF3A-212ENST00000619079 FMR1NBQ8N0W7 255 aaPredicted RBP12.48□□□□□ -0.41
UPF3A-212ENST00000619079 SMARCC2Q8TAQ2 1214 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 HNRNPLLQ8WVV9 542 aaKnown RBP12.48□□□□□ -0.41
UPF3A-212ENST00000619079 CHMP4CQ96CF2 233 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 TMX1Q9H3N1 280 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 MED23Q9ULK4 1368 aa12.48□□□□□ -0.41
UPF3A-212ENST00000619079 MAP2K7O14733 419 aa12.47□□□□□ -0.41
UPF3A-212ENST00000619079 TXLNAP40222 546 aa12.47□□□□□ -0.41
UPF3A-212ENST00000619079 LONRF2Q1L5Z9 754 aa12.47□□□□□ -0.41
UPF3A-212ENST00000619079 TCEANC2Q96MN5 208 aa12.47□□□□□ -0.41
UPF3A-212ENST00000619079 PARD6BQ9BYG5 372 aa12.47□□□□□ -0.41
UPF3A-212ENST00000619079 MRFAP1Q9Y605 127 aa12.47□□□□□ -0.41
UPF3A-212ENST00000619079 MYH15Q9Y2K3 1946 aa12.47□□□□□ -0.41
UPF3A-212ENST00000619079 HSP90B1P14625 803 aaKnown RBP12.47□□□□□ -0.41
UPF3A-212ENST00000619079 CABP4P57796 275 aa12.47□□□□□ -0.41
UPF3A-212ENST00000619079 TEFQ10587 303 aa12.47□□□□□ -0.41
UPF3A-212ENST00000619079 FAM227BQ96M60 508 aa12.47□□□□□ -0.41
UPF3A-212ENST00000619079 DEF6Q9H4E7 631 aa12.47□□□□□ -0.41
UPF3A-212ENST00000619079 LGR6Q9HBX8 967 aa12.47□□□□□ -0.41
UPF3A-212ENST00000619079 KCNQ2O43526 872 aa12.46□□□□□ -0.41
UPF3A-212ENST00000619079 ERLIN1O75477 346 aa12.46□□□□□ -0.41
UPF3A-212ENST00000619079 NLRP12P59046 1061 aa12.46□□□□□ -0.41
UPF3A-212ENST00000619079 FANCCQ00597 558 aa12.46□□□□□ -0.41
UPF3A-212ENST00000619079 SF3B2Q13435 895 aaKnown RBP12.46□□□□□ -0.41
UPF3A-212ENST00000619079 NKX1-1Q15270 411 aaPredicted RBP12.46□□□□□ -0.41
UPF3A-212ENST00000619079 DPCR1Q3MIW9 517 aa12.46□□□□□ -0.41
UPF3A-212ENST00000619079 ADALQ6DHV7 355 aa12.46□□□□□ -0.41
UPF3A-212ENST00000619079 HDXQ7Z353 690 aa12.46□□□□□ -0.41
UPF3A-212ENST00000619079 DDX11Q96FC9 970 aa12.46□□□□□ -0.41
UPF3A-212ENST00000619079 ZFP91Q96JP5 570 aaPredicted RBP12.46□□□□□ -0.41
UPF3A-212ENST00000619079 USP28Q96RU2 1077 aa12.46□□□□□ -0.41
UPF3A-212ENST00000619079 TMOD3Q9NYL9 352 aa12.46□□□□□ -0.41
UPF3A-212ENST00000619079 KAT6BQ8WYB5 2073 aa12.46□□□□□ -0.41
UPF3A-212ENST00000619079 RNMTO43148 476 aaKnown RBP12.46□□□□□ -0.42
UPF3A-212ENST00000619079 MMP14P50281 582 aa12.46□□□□□ -0.42
UPF3A-212ENST00000619079 APOBRQ0VD83 1088 aa12.45□□□□□ -0.42
UPF3A-212ENST00000619079 HDGFL1Q5TGJ6 251 aa12.45□□□□□ -0.42
UPF3A-212ENST00000619079 USPL1Q5W0Q7 1092 aa12.45□□□□□ -0.42
UPF3A-212ENST00000619079 NEK1Q96PY6 1258 aa12.45□□□□□ -0.42
UPF3A-212ENST00000619079 UTP14AQ9BVJ6 771 aaKnown RBP12.45□□□□□ -0.42
UPF3A-212ENST00000619079 PPP2R2CQ9Y2T4 447 aa12.45□□□□□ -0.42
UPF3A-212ENST00000619079 SHANK3Q9BYB0 1731 aa12.45□□□□□ -0.42
UPF3A-212ENST00000619079 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.45□□□□□ -0.42
UPF3A-212ENST00000619079 VWA3AA6NCI4 1184 aa12.45□□□□□ -0.42
UPF3A-212ENST00000619079 SLC3A2P08195 630 aaKnown RBP12.45□□□□□ -0.42
UPF3A-212ENST00000619079 NBPF7P0C2Y1 421 aaPredicted RBP12.45□□□□□ -0.42
UPF3A-212ENST00000619079 GYS2P54840 703 aa12.45□□□□□ -0.42
UPF3A-212ENST00000619079 GNG11P61952 73 aa12.45□□□□□ -0.42
UPF3A-212ENST00000619079 IL17REQ8NFR9 667 aa12.45□□□□□ -0.42
UPF3A-212ENST00000619079 NECTIN2Q92692 538 aa12.45□□□□□ -0.42
UPF3A-212ENST00000619079 FSD1Q9BTV5 496 aa12.45□□□□□ -0.42
UPF3A-212ENST00000619079 VPS18Q9P253 973 aa12.45□□□□□ -0.42
UPF3A-212ENST00000619079 KDM6AO15550 1401 aaPredicted RBP12.44□□□□□ -0.42
UPF3A-212ENST00000619079 EIF3CLB5ME19 914 aaKnown RBP12.44□□□□□ -0.42
UPF3A-212ENST00000619079 ERVV-2B6SEH9 535 aa12.44□□□□□ -0.42
UPF3A-212ENST00000619079 H3BQF6 201 aa12.44□□□□□ -0.42
UPF3A-212ENST00000619079 PFKFB2O60825 505 aa12.44□□□□□ -0.42
UPF3A-212ENST00000619079 ALDH1L1O75891 902 aa12.44□□□□□ -0.42
UPF3A-212ENST00000619079 HMGB1P09429 215 aaKnown RBP12.44□□□□□ -0.42
UPF3A-212ENST00000619079 ATP2B1P20020 1258 aa12.44□□□□□ -0.42
UPF3A-212ENST00000619079 AACSQ86V21 672 aa12.44□□□□□ -0.42
UPF3A-212ENST00000619079 KCNG4Q8TDN1 519 aa12.44□□□□□ -0.42
UPF3A-212ENST00000619079 EIF3CQ99613 913 aaKnown RBP12.44□□□□□ -0.42
UPF3A-212ENST00000619079 FAM107BQ9H098 131 aa12.44□□□□□ -0.42
UPF3A-212ENST00000619079 ACBD3Q9H3P7 528 aa12.44□□□□□ -0.42
UPF3A-212ENST00000619079 A0A087WWV3 80 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 A0A0D9SFI3 127 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 FANCGO15287 622 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 TUBBP07437 444 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 USP5P45974 858 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 CORO7P57737 925 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 TUBB2AQ13885 445 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 NCAPHQ15003 741 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 SUGP1Q8IWZ8 645 aaKnown RBP12.43□□□□□ -0.42
UPF3A-212ENST00000619079 FBXW7Q969H0 707 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms