RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 MIER1Q8N108 512 aa7.95□□□□□ -1.14
CUX1-220ENST00000607092 TSPYL6Q8N831 410 aa7.95□□□□□ -1.14
CUX1-220ENST00000607092 CD99L2Q8TCZ2 262 aa7.95□□□□□ -1.14
CUX1-220ENST00000607092 TSR2Q969E8 191 aaKnown RBP7.95□□□□□ -1.14
CUX1-220ENST00000607092 PRMT6Q96LA8 375 aaPredicted RBP7.95□□□□□ -1.14
CUX1-220ENST00000607092 C9orf78Q9NZ63 289 aaPredicted RBP7.95□□□□□ -1.14
CUX1-220ENST00000607092 TTF2Q9UNY4 1162 aaKnown RBP7.95□□□□□ -1.14
CUX1-220ENST00000607092 SUGT1Q9Y2Z0 365 aa7.95□□□□□ -1.14
CUX1-220ENST00000607092 MROH5Q6ZUA9 1318 aa7.95□□□□□ -1.14
CUX1-220ENST00000607092 CACNA1FO60840 1977 aa7.95□□□□□ -1.14
CUX1-220ENST00000607092 CCL15-CCL14A0A0B4J2E2 113 aa7.94□□□□□ -1.14
CUX1-220ENST00000607092 CLRN2A0PK11 232 aa7.94□□□□□ -1.14
CUX1-220ENST00000607092 WTIPA6NIX2 430 aaPredicted RBP7.94□□□□□ -1.14
CUX1-220ENST00000607092 F8W031 263 aaPredicted RBP7.94□□□□□ -1.14
CUX1-220ENST00000607092 GRM8O00222 908 aa7.94□□□□□ -1.14
CUX1-220ENST00000607092 FRAT2O75474 233 aaPredicted RBP7.94□□□□□ -1.14
CUX1-220ENST00000607092 TAF5LO75529 589 aa7.94□□□□□ -1.14
CUX1-220ENST00000607092 ALDH1L1O75891 902 aa7.94□□□□□ -1.14
CUX1-220ENST00000607092 KLRK1P26718 216 aa7.94□□□□□ -1.14
CUX1-220ENST00000607092 HOXD10P28358 340 aa7.94□□□□□ -1.14
CUX1-220ENST00000607092 CCL15Q16663 113 aa7.94□□□□□ -1.14
CUX1-220ENST00000607092 CAVIN4Q5BKX8 364 aa7.94□□□□□ -1.14
CUX1-220ENST00000607092 DCAF15Q66K64 600 aa7.94□□□□□ -1.14
CUX1-220ENST00000607092 LMBR1LQ6UX01 489 aa7.94□□□□□ -1.14
CUX1-220ENST00000607092 CERS5Q8N5B7 392 aa7.94□□□□□ -1.14
CUX1-220ENST00000607092 NKX2-3Q8TAU0 364 aa7.94□□□□□ -1.14
CUX1-220ENST00000607092 OPTNQ96CV9 577 aa7.94□□□□□ -1.14
CUX1-220ENST00000607092 CLMNQ96JQ2 1002 aa7.94□□□□□ -1.14
CUX1-220ENST00000607092 MRIQ9BWK5 157 aa7.94□□□□□ -1.14
CUX1-220ENST00000607092 ZNF70Q9UC06 446 aaPredicted RBP7.94□□□□□ -1.14
CUX1-220ENST00000607092 IRS2Q9Y4H2 1338 aa7.94□□□□□ -1.14
CUX1-220ENST00000607092 LAMB1P07942 1786 aa7.93□□□□□ -1.14
CUX1-220ENST00000607092 SPDYE5A6NIY4 337 aa7.93□□□□□ -1.14
CUX1-220ENST00000607092 SNAPC2Q13487 334 aa7.93□□□□□ -1.14
CUX1-220ENST00000607092 SLC4A8Q2Y0W8 1093 aa7.93□□□□□ -1.14
CUX1-220ENST00000607092 BEND3Q5T5X7 828 aa7.93□□□□□ -1.14
CUX1-220ENST00000607092 G2E3Q7L622 706 aa7.93□□□□□ -1.14
CUX1-220ENST00000607092 FAM83AQ86UY5 434 aa7.93□□□□□ -1.14
CUX1-220ENST00000607092 ERO1BQ86YB8 467 aa7.93□□□□□ -1.14
CUX1-220ENST00000607092 DZIP1LQ8IYY4 767 aaKnown RBP7.93□□□□□ -1.14
CUX1-220ENST00000607092 TDRD7Q8NHU6 1098 aaKnown RBP7.93□□□□□ -1.14
CUX1-220ENST00000607092 TEKT1Q969V4 418 aa7.93□□□□□ -1.14
CUX1-220ENST00000607092 ZNF333Q96JL9 665 aa7.93□□□□□ -1.14
CUX1-220ENST00000607092 SRCIN1Q9C0H9 1055 aa7.93□□□□□ -1.14
CUX1-220ENST00000607092 R3HDMLQ9H3Y0 253 aa7.93□□□□□ -1.14
CUX1-220ENST00000607092 ELP3Q9H9T3 547 aa7.93□□□□□ -1.14
CUX1-220ENST00000607092 ECM29Q5VYK3 1845 aa7.93□□□□□ -1.14
CUX1-220ENST00000607092 SSC5DA1L4H1 1573 aa7.93□□□□□ -1.14
CUX1-220ENST00000607092 RBBP6Q7Z6E9 1792 aaKnown RBP7.92□□□□□ -1.14
CUX1-220ENST00000607092 SPEF2Q9C093 1822 aa7.92□□□□□ -1.14
CUX1-220ENST00000607092 PLIN1O60240 522 aa7.92□□□□□ -1.14
CUX1-220ENST00000607092 TLR2O60603 784 aa7.92□□□□□ -1.14
CUX1-220ENST00000607092 CRKP46108 304 aa7.92□□□□□ -1.14
CUX1-220ENST00000607092 FOXO4P98177 505 aa7.92□□□□□ -1.14
CUX1-220ENST00000607092 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.92□□□□□ -1.14
CUX1-220ENST00000607092 BBXQ8WY36 941 aaPredicted RBP7.92□□□□□ -1.14
CUX1-220ENST00000607092 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.92□□□□□ -1.14
CUX1-220ENST00000607092 KIF16BQ96L93 1317 aa7.92□□□□□ -1.14
CUX1-220ENST00000607092 FANCIQ9NVI1 1328 aa7.92□□□□□ -1.14
CUX1-220ENST00000607092 ZNF646O15015 1829 aaPredicted RBP7.92□□□□□ -1.14
CUX1-220ENST00000607092 HTTP42858 3142 aa7.92□□□□□ -1.14
CUX1-220ENST00000607092 POTEFA5A3E0 1075 aa7.91□□□□□ -1.14
CUX1-220ENST00000607092 VAMP4O75379 141 aa7.91□□□□□ -1.14
CUX1-220ENST00000607092 PPATQ06203 517 aa7.91□□□□□ -1.14
CUX1-220ENST00000607092 PPIL2Q13356 520 aa7.91□□□□□ -1.14
CUX1-220ENST00000607092 VGLL4Q14135 290 aa7.91□□□□□ -1.14
CUX1-220ENST00000607092 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.91□□□□□ -1.14
CUX1-220ENST00000607092 BRI3BPQ8WY22 251 aa7.91□□□□□ -1.14
CUX1-220ENST00000607092 OTUD5Q96G74 571 aa7.91□□□□□ -1.14
CUX1-220ENST00000607092 MS4A4AQ96JQ5 239 aa7.91□□□□□ -1.14
CUX1-220ENST00000607092 FAM84BQ96KN1 310 aaPredicted RBP7.91□□□□□ -1.14
CUX1-220ENST00000607092 TEPSINQ96N21 525 aa7.91□□□□□ -1.14
CUX1-220ENST00000607092 PTPN18Q99952 460 aa7.91□□□□□ -1.14
CUX1-220ENST00000607092 HTATIP2Q9BUP3 242 aa7.91□□□□□ -1.14
CUX1-220ENST00000607092 TDRD3Q9H7E2 651 aaKnown RBP7.91□□□□□ -1.14
CUX1-220ENST00000607092 HDAC5Q9UQL6 1122 aa7.91□□□□□ -1.14
CUX1-220ENST00000607092 RPAP1Q9BWH6 1393 aaPredicted RBP7.91□□□□□ -1.14
CUX1-220ENST00000607092 TCP10L2B9ZVM9 353 aa7.9□□□□□ -1.14
CUX1-220ENST00000607092 IFIT1P09914 478 aaKnown RBP7.9□□□□□ -1.14
CUX1-220ENST00000607092 EN2P19622 333 aaPredicted RBP7.9□□□□□ -1.14
CUX1-220ENST00000607092 GJA5P36382 358 aa7.9□□□□□ -1.14
CUX1-220ENST00000607092 LACTBP83111 547 aaPredicted RBP7.9□□□□□ -1.14
CUX1-220ENST00000607092 HHIPL2Q6UWX4 724 aa7.9□□□□□ -1.14
CUX1-220ENST00000607092 WDR66Q8TBY9 1149 aa7.9□□□□□ -1.14
CUX1-220ENST00000607092 ZDHHC15Q96MV8 337 aa7.9□□□□□ -1.14
CUX1-220ENST00000607092 WRNIP1Q96S55 665 aa7.9□□□□□ -1.14
CUX1-220ENST00000607092 ZNF341Q9BYN7 854 aa7.9□□□□□ -1.14
CUX1-220ENST00000607092 TMEM39BQ9GZU3 492 aa7.9□□□□□ -1.14
CUX1-220ENST00000607092 FZD1Q9UP38 647 aa7.9□□□□□ -1.14
CUX1-220ENST00000607092 NR2E3Q9Y5X4 410 aa7.9□□□□□ -1.14
CUX1-220ENST00000607092 SNAP23O00161 211 aa7.89□□□□□ -1.15
CUX1-220ENST00000607092 PDE8BO95263 885 aa7.89□□□□□ -1.15
CUX1-220ENST00000607092 GYG1P46976 350 aa7.89□□□□□ -1.15
CUX1-220ENST00000607092 UBXN2AP68543 259 aa7.89□□□□□ -1.15
CUX1-220ENST00000607092 EXOSC9Q06265 439 aaKnown RBP7.89□□□□□ -1.15
CUX1-220ENST00000607092 METTL24Q5JXM2 366 aa7.89□□□□□ -1.15
CUX1-220ENST00000607092 FBXO33Q7Z6M2 555 aa7.89□□□□□ -1.15
CUX1-220ENST00000607092 ANKRD23Q86SG2 305 aa7.89□□□□□ -1.15
CUX1-220ENST00000607092 RAET1EQ8TD07 263 aa7.89□□□□□ -1.15
CUX1-220ENST00000607092 FAM151AQ8WW52 585 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms