RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 MLLT1Q03111 559 aaPredicted RBP9.54□□□□□ -0.88
CUX1-219ENST00000606749 CHAF1AQ13111 956 aaPredicted RBP9.54□□□□□ -0.88
CUX1-219ENST00000606749 TNFAIP1Q13829 316 aa9.54□□□□□ -0.88
CUX1-219ENST00000606749 PUM3Q15397 648 aaKnown RBP9.54□□□□□ -0.88
CUX1-219ENST00000606749 NOM1Q5C9Z4 860 aaKnown RBP9.54□□□□□ -0.88
CUX1-219ENST00000606749 ATG9AQ7Z3C6 839 aa9.54□□□□□ -0.88
CUX1-219ENST00000606749 TBC1D22AQ8WUA7 517 aa9.54□□□□□ -0.88
CUX1-219ENST00000606749 ZNF296Q8WUU4 475 aaPredicted RBP9.54□□□□□ -0.88
CUX1-219ENST00000606749 WNK4Q96J92 1243 aa9.54□□□□□ -0.88
CUX1-219ENST00000606749 TEPSINQ96N21 525 aa9.54□□□□□ -0.88
CUX1-219ENST00000606749 CFHR5Q9BXR6 569 aa9.54□□□□□ -0.88
CUX1-219ENST00000606749 R3HDMLQ9H3Y0 253 aa9.54□□□□□ -0.88
CUX1-219ENST00000606749 SSC5DA1L4H1 1573 aa9.54□□□□□ -0.88
CUX1-219ENST00000606749 MANSC4A6NHS7 340 aaPredicted RBP9.53□□□□□ -0.88
CUX1-219ENST00000606749 TCP10L2B9ZVM9 353 aa9.53□□□□□ -0.88
CUX1-219ENST00000606749 UBTFL1P0CB47 393 aaPredicted RBP9.53□□□□□ -0.88
CUX1-219ENST00000606749 ZBTB48P10074 688 aaPredicted RBP9.53□□□□□ -0.88
CUX1-219ENST00000606749 IREB2P48200 963 aaKnown RBP9.53□□□□□ -0.88
CUX1-219ENST00000606749 PKN2Q16513 984 aaKnown RBP9.53□□□□□ -0.88
CUX1-219ENST00000606749 IFNL1Q8IU54 200 aa9.53□□□□□ -0.88
CUX1-219ENST00000606749 ANKRD13AQ8IZ07 590 aa9.53□□□□□ -0.88
CUX1-219ENST00000606749 LPIN2Q92539 896 aa9.53□□□□□ -0.88
CUX1-219ENST00000606749 API5Q9BZZ5 524 aaKnown RBP9.53□□□□□ -0.88
CUX1-219ENST00000606749 SUGT1Q9Y2Z0 365 aa9.53□□□□□ -0.88
CUX1-219ENST00000606749 KIF16BQ96L93 1317 aa9.53□□□□□ -0.88
CUX1-219ENST00000606749 ALDH1A1P00352 501 aa9.52□□□□□ -0.89
CUX1-219ENST00000606749 SLC5A1P13866 664 aa9.52□□□□□ -0.89
CUX1-219ENST00000606749 GJA5P36382 358 aa9.52□□□□□ -0.89
CUX1-219ENST00000606749 RARSP54136 660 aaKnown RBP9.52□□□□□ -0.89
CUX1-219ENST00000606749 APOBEC3HQ6NTF7 200 aaKnown RBP9.52□□□□□ -0.89
CUX1-219ENST00000606749 TEKT1Q969V4 418 aa9.52□□□□□ -0.89
CUX1-219ENST00000606749 ZDHHC15Q96MV8 337 aa9.52□□□□□ -0.89
CUX1-219ENST00000606749 TMEM39BQ9GZU3 492 aa9.52□□□□□ -0.89
CUX1-219ENST00000606749 FBXO3Q9UK99 471 aa9.52□□□□□ -0.89
CUX1-219ENST00000606749 HDAC5Q9UQL6 1122 aa9.52□□□□□ -0.89
CUX1-219ENST00000606749 ECM29Q5VYK3 1845 aa9.52□□□□□ -0.89
CUX1-219ENST00000606749 FKTNO75072 461 aa9.51□□□□□ -0.89
CUX1-219ENST00000606749 CIAO1O76071 339 aa9.51□□□□□ -0.89
CUX1-219ENST00000606749 TNNI2P48788 182 aa9.51□□□□□ -0.89
CUX1-219ENST00000606749 MAP3K9P80192 1104 aa9.51□□□□□ -0.89
CUX1-219ENST00000606749 HHIPL2Q6UWX4 724 aa9.51□□□□□ -0.89
CUX1-219ENST00000606749 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.51□□□□□ -0.89
CUX1-219ENST00000606749 CDAN1Q8IWY9 1227 aa9.51□□□□□ -0.89
CUX1-219ENST00000606749 WDR66Q8TBY9 1149 aa9.51□□□□□ -0.89
CUX1-219ENST00000606749 ARHGAP45Q92619 1136 aa9.51□□□□□ -0.89
CUX1-219ENST00000606749 SIL1Q9H173 461 aa9.51□□□□□ -0.89
CUX1-219ENST00000606749 CEP126Q9P2H0 1117 aa9.51□□□□□ -0.89
CUX1-219ENST00000606749 LRRFIP2Q9Y608 721 aaKnown RBP9.51□□□□□ -0.89
CUX1-219ENST00000606749 TESPA1A2RU30 521 aaPredicted RBP9.5□□□□□ -0.89
CUX1-219ENST00000606749 IGF2BP3O00425 579 aaKnown RBP eCLIP9.5□□□□□ -0.89
CUX1-219ENST00000606749 CACNB3P54284 484 aa9.5□□□□□ -0.89
CUX1-219ENST00000606749 FKBP1CQ5VVH2 108 aa9.5□□□□□ -0.89
CUX1-219ENST00000606749 INTS3Q68E01 1043 aaKnown RBP9.5□□□□□ -0.89
CUX1-219ENST00000606749 FAM83AQ86UY5 434 aa9.5□□□□□ -0.89
CUX1-219ENST00000606749 OPTNQ96CV9 577 aa9.5□□□□□ -0.89
CUX1-219ENST00000606749 MS4A4AQ96JQ5 239 aa9.5□□□□□ -0.89
CUX1-219ENST00000606749 MEIS3Q99687 375 aa9.5□□□□□ -0.89
CUX1-219ENST00000606749 PTPN18Q99952 460 aa9.5□□□□□ -0.89
CUX1-219ENST00000606749 ELP3Q9H9T3 547 aa9.5□□□□□ -0.89
CUX1-219ENST00000606749 HPS5Q9UPZ3 1129 aa9.5□□□□□ -0.89
CUX1-219ENST00000606749 PA2G4Q9UQ80 394 aaKnown RBP9.5□□□□□ -0.89
CUX1-219ENST00000606749 MAST3O60307 1309 aa9.5□□□□□ -0.89
CUX1-219ENST00000606749 IL15P40933 162 aaPredicted RBP9.49□□□□□ -0.89
CUX1-219ENST00000606749 SOX10P56693 466 aa9.49□□□□□ -0.89
CUX1-219ENST00000606749 VGLL4Q14135 290 aa9.49□□□□□ -0.89
CUX1-219ENST00000606749 ATP2B3Q16720 1220 aa9.49□□□□□ -0.89
CUX1-219ENST00000606749 OTUD7BQ6GQQ9 843 aa9.49□□□□□ -0.89
CUX1-219ENST00000606749 FBXO46Q6PJ61 603 aaPredicted RBP9.49□□□□□ -0.89
CUX1-219ENST00000606749 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.49□□□□□ -0.89
CUX1-219ENST00000606749 CNKSR2Q8WXI2 1034 aa9.49□□□□□ -0.89
CUX1-219ENST00000606749 COPRSQ9NQ92 184 aa9.49□□□□□ -0.89
CUX1-219ENST00000606749 GNL3LQ9NVN8 582 aaKnown RBP9.49□□□□□ -0.89
CUX1-219ENST00000606749 TMOD2Q9NZR1 351 aa9.49□□□□□ -0.89
CUX1-219ENST00000606749 IPO8O15397 1037 aaKnown RBP9.48□□□□□ -0.89
CUX1-219ENST00000606749 GNAI3P08754 354 aa9.48□□□□□ -0.89
CUX1-219ENST00000606749 PHKA1P46020 1223 aa9.48□□□□□ -0.89
CUX1-219ENST00000606749 TIMM10P62072 90 aa9.48□□□□□ -0.89
CUX1-219ENST00000606749 DENND2AQ9ULE3 1009 aa9.48□□□□□ -0.89
CUX1-219ENST00000606749 CSADQ9Y600 493 aa9.48□□□□□ -0.89
CUX1-219ENST00000606749 SEMA3EO15041 775 aa9.47□□□□□ -0.89
CUX1-219ENST00000606749 ZBTB22O15209 634 aa9.47□□□□□ -0.89
CUX1-219ENST00000606749 BCAR3O75815 825 aa9.47□□□□□ -0.89
CUX1-219ENST00000606749 LDHBP07195 334 aaKnown RBP9.47□□□□□ -0.89
CUX1-219ENST00000606749 TRIM27P14373 513 aa9.47□□□□□ -0.89
CUX1-219ENST00000606749 PRDX5P30044 214 aa9.47□□□□□ -0.89
CUX1-219ENST00000606749 ADORA1P30542 326 aa9.47□□□□□ -0.89
CUX1-219ENST00000606749 GTF2A2P52657 109 aa9.47□□□□□ -0.89
CUX1-219ENST00000606749 CRHR2Q13324 411 aa9.47□□□□□ -0.89
CUX1-219ENST00000606749 DIXDC1Q155Q3 683 aa9.47□□□□□ -0.89
CUX1-219ENST00000606749 CCDC102BQ68D86 513 aa9.47□□□□□ -0.89
CUX1-219ENST00000606749 CDC42EP5Q6NZY7 148 aa9.47□□□□□ -0.89
CUX1-219ENST00000606749 MIGA2Q7L4E1 593 aa9.47□□□□□ -0.89
CUX1-219ENST00000606749 HOOK2Q96ED9 719 aa9.47□□□□□ -0.89
CUX1-219ENST00000606749 DAGLAQ9Y4D2 1042 aa9.47□□□□□ -0.89
CUX1-219ENST00000606749 ARAP2Q8WZ64 1704 aa9.47□□□□□ -0.89
CUX1-219ENST00000606749 SRGAP3O43295 1099 aa9.46□□□□□ -0.9
CUX1-219ENST00000606749 SP3Q02447 781 aa9.46□□□□□ -0.9
CUX1-219ENST00000606749 TCP10Q12799 353 aa9.46□□□□□ -0.9
CUX1-219ENST00000606749 MTX1Q13505 466 aa9.46□□□□□ -0.9
CUX1-219ENST00000606749 DCAF15Q66K64 600 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 143.9 ms