RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 DALRD3Q5D0E6 543 aaKnown RBP13.93□□□□□ -0.18
VRK3-223ENST00000601341 SPTY2D1Q68D10 685 aaPredicted RBP13.93□□□□□ -0.18
VRK3-223ENST00000601341 KLHL34Q8N239 644 aa13.93□□□□□ -0.18
VRK3-223ENST00000601341 MAGEB6Q8N7X4 407 aa13.93□□□□□ -0.18
VRK3-223ENST00000601341 GRPEL1Q9HAV7 217 aa13.93□□□□□ -0.18
VRK3-223ENST00000601341 RAI14Q9P0K7 980 aa13.93□□□□□ -0.18
VRK3-223ENST00000601341 ZNF532Q9HCE3 1301 aa13.93□□□□□ -0.18
VRK3-223ENST00000601341 SALL1Q9NSC2 1324 aa13.93□□□□□ -0.18
VRK3-223ENST00000601341 TCRBV5S4A2TA0A5A2 114 aa13.92□□□□□ -0.18
VRK3-223ENST00000601341 G3V3G9 751 aa13.92□□□□□ -0.18
VRK3-223ENST00000601341 MAST3O60307 1309 aa13.92□□□□□ -0.18
VRK3-223ENST00000601341 PTH1RQ03431 593 aa13.92□□□□□ -0.18
VRK3-223ENST00000601341 DCAF8Q5TAQ9 597 aa13.92□□□□□ -0.18
VRK3-223ENST00000601341 TMED8Q6PL24 325 aaPredicted RBP13.92□□□□□ -0.18
VRK3-223ENST00000601341 MAP4K1Q92918 833 aa13.92□□□□□ -0.18
VRK3-223ENST00000601341 DUOX1Q9NRD9 1551 aa13.92□□□□□ -0.18
VRK3-223ENST00000601341 DLEC1Q9Y238 1755 aa13.92□□□□□ -0.18
VRK3-223ENST00000601341 HSPA4P34932 840 aa13.91□□□□□ -0.18
VRK3-223ENST00000601341 CCDC129Q6ZRS4 1044 aa13.91□□□□□ -0.18
VRK3-223ENST00000601341 PUS7LQ9H0K6 701 aaKnown RBP13.91□□□□□ -0.18
VRK3-223ENST00000601341 SNED1Q8TER0 1413 aa13.91□□□□□ -0.18
VRK3-223ENST00000601341 M0R2C6 588 aa13.91□□□□□ -0.18
VRK3-223ENST00000601341 NEK4P51957 841 aa13.91□□□□□ -0.18
VRK3-223ENST00000601341 PODNQ7Z5L7 613 aa13.91□□□□□ -0.18
VRK3-223ENST00000601341 TBC1D22AQ8WUA7 517 aa13.91□□□□□ -0.18
VRK3-223ENST00000601341 GZF1Q9H116 711 aaPredicted RBP13.91□□□□□ -0.18
VRK3-223ENST00000601341 FAM205AQ6ZU69 1335 aa13.9□□□□□ -0.18
VRK3-223ENST00000601341 GPAA1O43292 621 aa13.9□□□□□ -0.18
VRK3-223ENST00000601341 TMX3Q96JJ7 454 aa13.9□□□□□ -0.18
VRK3-223ENST00000601341 PSMD1Q99460 953 aa13.9□□□□□ -0.18
VRK3-223ENST00000601341 DSCC1Q9BVC3 393 aa13.9□□□□□ -0.18
VRK3-223ENST00000601341 JAG2Q9Y219 1238 aa13.9□□□□□ -0.18
VRK3-223ENST00000601341 LDHBP07195 334 aaKnown RBP13.89□□□□□ -0.19
VRK3-223ENST00000601341 CYP7A1P22680 504 aa13.89□□□□□ -0.19
VRK3-223ENST00000601341 ZNF445P59923 1031 aa13.89□□□□□ -0.19
VRK3-223ENST00000601341 KIAA2012Q0VF49 1180 aa13.89□□□□□ -0.19
VRK3-223ENST00000601341 DOK7Q18PE1 504 aa13.89□□□□□ -0.19
VRK3-223ENST00000601341 NAA16Q6N069 864 aaPredicted RBP13.89□□□□□ -0.19
VRK3-223ENST00000601341 AIDAQ96BJ3 306 aa13.89□□□□□ -0.19
VRK3-223ENST00000601341 NSUN4Q96CB9 384 aaKnown RBP13.89□□□□□ -0.19
VRK3-223ENST00000601341 RBM8AQ9Y5S9 174 aaKnown RBP13.89□□□□□ -0.19
VRK3-223ENST00000601341 U3KPZ7 1027 aaPredicted RBP13.89□□□□□ -0.19
VRK3-223ENST00000601341 CACNA1SQ13698 1873 aa13.89□□□□□ -0.19
VRK3-223ENST00000601341 HSPD1P10809 573 aaKnown RBP13.88□□□□□ -0.19
VRK3-223ENST00000601341 PRDX5P30044 214 aa13.88□□□□□ -0.19
VRK3-223ENST00000601341 MECOMQ03112 1051 aa13.88□□□□□ -0.19
VRK3-223ENST00000601341 NECTIN1Q15223 517 aa13.88□□□□□ -0.19
VRK3-223ENST00000601341 RNF20Q5VTR2 975 aa13.88□□□□□ -0.19
VRK3-223ENST00000601341 VPS33BQ9H267 617 aa13.88□□□□□ -0.19
VRK3-223ENST00000601341 FOXD4L1Q9NU39 408 aa13.88□□□□□ -0.19
VRK3-223ENST00000601341 ZKSCAN1P17029 563 aaPredicted RBP13.88□□□□□ -0.19
VRK3-223ENST00000601341 GTF2IP78347 998 aa13.88□□□□□ -0.19
VRK3-223ENST00000601341 MFSD14BQ5SR56 506 aa13.88□□□□□ -0.19
VRK3-223ENST00000601341 VPS53Q5VIR6 699 aa13.88□□□□□ -0.19
VRK3-223ENST00000601341 DZIP1Q86YF9 867 aaKnown RBP13.88□□□□□ -0.19
VRK3-223ENST00000601341 DDX49Q9Y6V7 483 aaKnown RBP13.88□□□□□ -0.19
VRK3-223ENST00000601341 DOCK2Q92608 1830 aa13.88□□□□□ -0.19
VRK3-223ENST00000601341 PPIP5K2O43314 1243 aa13.87□□□□□ -0.19
VRK3-223ENST00000601341 GSTO1P78417 241 aa13.87□□□□□ -0.19
VRK3-223ENST00000601341 AOC3Q16853 763 aa13.87□□□□□ -0.19
VRK3-223ENST00000601341 TTLL5Q6EMB2 1281 aa13.87□□□□□ -0.19
VRK3-223ENST00000601341 KCNB2Q92953 911 aa13.87□□□□□ -0.19
VRK3-223ENST00000601341 STRBPQ96SI9 672 aaKnown RBP13.87□□□□□ -0.19
VRK3-223ENST00000601341 DBNDD1Q9H9R9 158 aa13.87□□□□□ -0.19
VRK3-223ENST00000601341 LMBRD1Q9NUN5 540 aa13.87□□□□□ -0.19
VRK3-223ENST00000601341 PALD1Q9ULE6 856 aa13.87□□□□□ -0.19
VRK3-223ENST00000601341 SUGT1Q9Y2Z0 365 aa13.87□□□□□ -0.19
VRK3-223ENST00000601341 KIAA1551Q9HCM1 1747 aa13.87□□□□□ -0.19
VRK3-223ENST00000601341 ECE2O60344 883 aa13.86□□□□□ -0.19
VRK3-223ENST00000601341 MBD4O95243 580 aa13.86□□□□□ -0.19
VRK3-223ENST00000601341 GNAT2P19087 354 aa13.86□□□□□ -0.19
VRK3-223ENST00000601341 CREB3L3Q68CJ9 461 aa13.86□□□□□ -0.19
VRK3-223ENST00000601341 ZNF384Q8TF68 577 aa13.86□□□□□ -0.19
VRK3-223ENST00000601341 CTNNA3Q9UI47 895 aa13.86□□□□□ -0.19
VRK3-223ENST00000601341 BCS1LQ9Y276 419 aa13.86□□□□□ -0.19
VRK3-223ENST00000601341 SNX14Q9Y5W7 946 aa13.86□□□□□ -0.19
VRK3-223ENST00000601341 MAGEB6P1A0A0J9YX57 407 aa13.86□□□□□ -0.19
VRK3-223ENST00000601341 SLC27A2O14975 620 aa13.86□□□□□ -0.19
VRK3-223ENST00000601341 BRD1O95696 1058 aa13.86□□□□□ -0.19
VRK3-223ENST00000601341 LDHCP07864 332 aa13.86□□□□□ -0.19
VRK3-223ENST00000601341 ADGRA1Q86SQ6 560 aa13.86□□□□□ -0.19
VRK3-223ENST00000601341 MIGA1Q8NAN2 632 aa13.86□□□□□ -0.19
VRK3-223ENST00000601341 NLGN2Q8NFZ4 835 aa13.86□□□□□ -0.19
VRK3-223ENST00000601341 FBXW7Q969H0 707 aa13.86□□□□□ -0.19
VRK3-223ENST00000601341 ARMT1Q9H993 441 aa13.86□□□□□ -0.19
VRK3-223ENST00000601341 MYH7P12883 1935 aa13.85□□□□□ -0.19
VRK3-223ENST00000601341 MBD3O95983 291 aa13.85□□□□□ -0.19
VRK3-223ENST00000601341 PDIA4P13667 645 aaKnown RBP13.85□□□□□ -0.19
VRK3-223ENST00000601341 STRIP1Q5VSL9 837 aa13.85□□□□□ -0.19
VRK3-223ENST00000601341 SLF2Q8IX21 1173 aa13.85□□□□□ -0.19
VRK3-223ENST00000601341 RASEFQ8IZ41 740 aa13.85□□□□□ -0.19
VRK3-223ENST00000601341 ZDHHC9Q9Y397 364 aa13.85□□□□□ -0.19
VRK3-223ENST00000601341 MYH13Q9UKX3 1938 aa13.84□□□□□ -0.19
VRK3-223ENST00000601341 PATL2C9JE40 543 aaKnown RBP13.84□□□□□ -0.19
VRK3-223ENST00000601341 APPP05067 770 aa13.84□□□□□ -0.19
VRK3-223ENST00000601341 TSGA10IPQ3SY00 556 aa13.84□□□□□ -0.19
VRK3-223ENST00000601341 MCTP1Q6DN14 999 aa13.84□□□□□ -0.19
VRK3-223ENST00000601341 LCORLQ8N3X6 602 aa13.84□□□□□ -0.19
VRK3-223ENST00000601341 LARGE2Q8N3Y3 721 aa13.84□□□□□ -0.19
VRK3-223ENST00000601341 RIOK1Q9BRS2 568 aaKnown RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms