RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 ZBTB22O15209 634 aa18.7■□□□□ 0.58
LIG1-219ENST00000600055 AACSQ86V21 672 aa18.7■□□□□ 0.58
LIG1-219ENST00000600055 DNAJC5GQ8N7S2 189 aa18.7■□□□□ 0.58
LIG1-219ENST00000600055 KIF1BPQ96EK5 621 aa18.7■□□□□ 0.58
LIG1-219ENST00000600055 SUGT1Q9Y2Z0 365 aa18.7■□□□□ 0.58
LIG1-219ENST00000600055 SALL1Q9NSC2 1324 aa18.7■□□□□ 0.58
LIG1-219ENST00000600055 RAB11FIP3O75154 756 aa18.69■□□□□ 0.58
LIG1-219ENST00000600055 MCAMP43121 646 aa18.69■□□□□ 0.58
LIG1-219ENST00000600055 TTC39AQ5SRH9 613 aa18.69■□□□□ 0.58
LIG1-219ENST00000600055 PRAMEF18Q5VWM3 479 aa18.69■□□□□ 0.58
LIG1-219ENST00000600055 SPATA5Q8NB90 893 aa18.69■□□□□ 0.58
LIG1-219ENST00000600055 LDHBP07195 334 aaKnown RBP18.68■□□□□ 0.58
LIG1-219ENST00000600055 UQCRFS1P1P0C7P4 283 aa18.68■□□□□ 0.58
LIG1-219ENST00000600055 CCDC158Q5M9N0 1113 aa18.68■□□□□ 0.58
LIG1-219ENST00000600055 TEKT1Q969V4 418 aa18.68■□□□□ 0.58
LIG1-219ENST00000600055 CDCA5Q96FF9 252 aa18.68■□□□□ 0.58
LIG1-219ENST00000600055 TDRD3Q9H7E2 651 aaKnown RBP18.68■□□□□ 0.58
LIG1-219ENST00000600055 SNRKQ9NRH2 765 aa18.68■□□□□ 0.58
LIG1-219ENST00000600055 ABCF2Q9UG63 623 aa18.68■□□□□ 0.58
LIG1-219ENST00000600055 PDS5AQ29RF7 1337 aaKnown RBP18.68■□□□□ 0.58
LIG1-219ENST00000600055 HDLBPQ00341 1268 aaKnown RBP18.67■□□□□ 0.58
LIG1-219ENST00000600055 DIXDC1Q155Q3 683 aa18.67■□□□□ 0.58
LIG1-219ENST00000600055 TBC1D9Q6ZT07 1266 aa18.67■□□□□ 0.58
LIG1-219ENST00000600055 EXOC6Q8TAG9 804 aa18.67■□□□□ 0.58
LIG1-219ENST00000600055 VEZTQ9HBM0 779 aa18.67■□□□□ 0.58
LIG1-219ENST00000600055 MKRN1Q9UHC7 482 aaKnown RBP18.67■□□□□ 0.58
LIG1-219ENST00000600055 ABT1Q9ULW3 272 aaKnown RBP18.67■□□□□ 0.58
LIG1-219ENST00000600055 POLR2AP24928 1970 aaKnown RBP18.67■□□□□ 0.58
LIG1-219ENST00000600055 MAST3O60307 1309 aa18.67■□□□□ 0.58
LIG1-219ENST00000600055 MYH13Q9UKX3 1938 aa18.66■□□□□ 0.58
LIG1-219ENST00000600055 MYO1BO43795 1136 aa18.66■□□□□ 0.58
LIG1-219ENST00000600055 SMARCA5O60264 1052 aaPredicted RBP18.66■□□□□ 0.58
LIG1-219ENST00000600055 APOBEC3FQ8IUX4 373 aaKnown RBP18.66■□□□□ 0.58
LIG1-219ENST00000600055 CLASRPQ8N2M8 674 aaKnown RBP18.66■□□□□ 0.58
LIG1-219ENST00000600055 MRIQ9BWK5 157 aa18.66■□□□□ 0.58
LIG1-219ENST00000600055 DCTPP1Q9H773 170 aa18.66■□□□□ 0.58
LIG1-219ENST00000600055 ZNF70Q9UC06 446 aaPredicted RBP18.66■□□□□ 0.58
LIG1-219ENST00000600055 SPDYE2Q495Y8 402 aa18.65■□□□□ 0.58
LIG1-219ENST00000600055 APOBEC3HQ6NTF7 200 aaKnown RBP18.65■□□□□ 0.58
LIG1-219ENST00000600055 HHIPL2Q6UWX4 724 aa18.65■□□□□ 0.58
LIG1-219ENST00000600055 ZGPATQ8N5A5 531 aaKnown RBP18.65■□□□□ 0.58
LIG1-219ENST00000600055 KLRG1Q96E93 195 aa18.65■□□□□ 0.58
LIG1-219ENST00000600055 ZDHHC15Q96MV8 337 aa18.65■□□□□ 0.58
LIG1-219ENST00000600055 CEP350Q5VT06 3117 aa18.65■□□□□ 0.58
LIG1-219ENST00000600055 ZAP70P43403 619 aa18.64■□□□□ 0.57
LIG1-219ENST00000600055 IRX6P78412 446 aaPredicted RBP18.64■□□□□ 0.57
LIG1-219ENST00000600055 ZNF512BQ96KM6 892 aaPredicted RBP18.64■□□□□ 0.57
LIG1-219ENST00000600055 LRRCC1Q9C099 1032 aa18.64■□□□□ 0.57
LIG1-219ENST00000600055 DAGLAQ9Y4D2 1042 aa18.64■□□□□ 0.57
LIG1-219ENST00000600055 TLL2Q9Y6L7 1015 aa18.64■□□□□ 0.57
LIG1-219ENST00000600055 NDUFB9Q9Y6M9 179 aa18.64■□□□□ 0.57
LIG1-219ENST00000600055 IFIT2P09913 472 aaKnown RBP18.63■□□□□ 0.57
LIG1-219ENST00000600055 CACNB3P54284 484 aa18.63■□□□□ 0.57
LIG1-219ENST00000600055 SPTY2D1Q68D10 685 aaPredicted RBP18.63■□□□□ 0.57
LIG1-219ENST00000600055 ERICH6Q7L0X2 663 aa18.63■□□□□ 0.57
LIG1-219ENST00000600055 DZIP1Q86YF9 867 aaKnown RBP18.63■□□□□ 0.57
LIG1-219ENST00000600055 DEFB129Q9H1M3 183 aa18.63■□□□□ 0.57
LIG1-219ENST00000600055 GBA2Q9HCG7 927 aaPredicted RBP18.63■□□□□ 0.57
LIG1-219ENST00000600055 TRPM7Q96QT4 1865 aa18.63■□□□□ 0.57
LIG1-219ENST00000600055 TCP10L2B9ZVM9 353 aa18.62■□□□□ 0.57
LIG1-219ENST00000600055 CYP2E1P05181 493 aaPredicted RBP18.62■□□□□ 0.57
LIG1-219ENST00000600055 MECOMQ03112 1051 aa18.62■□□□□ 0.57
LIG1-219ENST00000600055 DEFB115Q30KQ5 88 aa18.62■□□□□ 0.57
LIG1-219ENST00000600055 SAPCD2Q86UD0 394 aa18.62■□□□□ 0.57
LIG1-219ENST00000600055 ZNF384Q8TF68 577 aa18.62■□□□□ 0.57
LIG1-219ENST00000600055 CNTNAP1P78357 1384 aa18.62■□□□□ 0.57
LIG1-219ENST00000600055 RASSF10A6NK89 507 aa18.61■□□□□ 0.57
LIG1-219ENST00000600055 RASA3Q14644 834 aa18.61■□□□□ 0.57
LIG1-219ENST00000600055 MOB2Q70IA6 237 aa18.61■□□□□ 0.57
LIG1-219ENST00000600055 C2orf69Q8N8R5 385 aa18.61■□□□□ 0.57
LIG1-219ENST00000600055 PIH1D3Q9NQM4 214 aaKnown RBP18.61■□□□□ 0.57
LIG1-219ENST00000600055 RAI14Q9P0K7 980 aa18.61■□□□□ 0.57
LIG1-219ENST00000600055 VEGFBP49765 207 aa18.6■□□□□ 0.57
LIG1-219ENST00000600055 CDC42EP5Q6NZY7 148 aa18.6■□□□□ 0.57
LIG1-219ENST00000600055 NSUN4Q96CB9 384 aaKnown RBP18.6■□□□□ 0.57
LIG1-219ENST00000600055 LRP2BPQ9P2M1 347 aa18.6■□□□□ 0.57
LIG1-219ENST00000600055 GAKO14976 1311 aa18.59■□□□□ 0.57
LIG1-219ENST00000600055 HUNKP57058 714 aa18.59■□□□□ 0.57
LIG1-219ENST00000600055 CYP4F22Q6NT55 531 aa18.59■□□□□ 0.57
LIG1-219ENST00000600055 PAXIP1Q6ZW49 1069 aaPredicted RBP18.59■□□□□ 0.57
LIG1-219ENST00000600055 CDAN1Q8IWY9 1227 aa18.59■□□□□ 0.57
LIG1-219ENST00000600055 ANTXR1Q9H6X2 564 aa18.59■□□□□ 0.57
LIG1-219ENST00000600055 USP40Q9NVE5 1235 aa18.59■□□□□ 0.57
LIG1-219ENST00000600055 FZD1Q9UP38 647 aa18.59■□□□□ 0.57
LIG1-219ENST00000600055 PPP2R3BQ9Y5P8 575 aa18.59■□□□□ 0.57
LIG1-219ENST00000600055 ECM29Q5VYK3 1845 aa18.58■□□□□ 0.57
LIG1-219ENST00000600055 AAMPQ13685 434 aa18.58■□□□□ 0.56
LIG1-219ENST00000600055 PRKG1Q13976 671 aa18.58■□□□□ 0.56
LIG1-219ENST00000600055 NBPF12Q5TAG4 269 aaPredicted RBP18.58■□□□□ 0.56
LIG1-219ENST00000600055 FAM163AQ96GL9 167 aaPredicted RBP18.58■□□□□ 0.56
LIG1-219ENST00000600055 TMEM39BQ9GZU3 492 aa18.58■□□□□ 0.56
LIG1-219ENST00000600055 AKAP11Q9UKA4 1901 aa18.58■□□□□ 0.56
LIG1-219ENST00000600055 MROH7-TTC4A0A0A0MT08 1334 aa18.57■□□□□ 0.56
LIG1-219ENST00000600055 NF2P35240 595 aa18.57■□□□□ 0.56
LIG1-219ENST00000600055 BTDP43251 543 aa18.57■□□□□ 0.56
LIG1-219ENST00000600055 GRM1Q13255 1194 aa18.57■□□□□ 0.56
LIG1-219ENST00000600055 HDAC1Q13547 482 aaPredicted RBP18.57■□□□□ 0.56
LIG1-219ENST00000600055 TNFAIP1Q13829 316 aa18.57■□□□□ 0.56
LIG1-219ENST00000600055 TTLL12Q14166 644 aaPredicted RBP18.57■□□□□ 0.56
LIG1-219ENST00000600055 SLF2Q8IX21 1173 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms