RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 NBPF12Q5TAG4 269 aaPredicted RBP12.24□□□□□ -0.45
VRK3-216ENST00000599342 SPRYD7Q5W111 196 aa12.24□□□□□ -0.45
VRK3-216ENST00000599342 CTU1Q7Z7A3 348 aaKnown RBP12.24□□□□□ -0.45
VRK3-216ENST00000599342 MAST3O60307 1309 aa12.23□□□□□ -0.45
VRK3-216ENST00000599342 TCP10L2B9ZVM9 353 aa12.23□□□□□ -0.45
VRK3-216ENST00000599342 ALDH1A1P00352 501 aa12.23□□□□□ -0.45
VRK3-216ENST00000599342 ZBTB48P10074 688 aaPredicted RBP12.23□□□□□ -0.45
VRK3-216ENST00000599342 HDLBPQ00341 1268 aaKnown RBP12.23□□□□□ -0.45
VRK3-216ENST00000599342 LPIN2Q92539 896 aa12.23□□□□□ -0.45
VRK3-216ENST00000599342 TEKT1Q969V4 418 aa12.23□□□□□ -0.45
VRK3-216ENST00000599342 TMOD2Q9NZR1 351 aa12.23□□□□□ -0.45
VRK3-216ENST00000599342 FGFR2P21802 821 aa12.22□□□□□ -0.45
VRK3-216ENST00000599342 RFX5P48382 616 aaPredicted RBP12.22□□□□□ -0.45
VRK3-216ENST00000599342 INHBEP58166 350 aa12.22□□□□□ -0.45
VRK3-216ENST00000599342 MLLT1Q03111 559 aaPredicted RBP12.22□□□□□ -0.45
VRK3-216ENST00000599342 ANKRD13AQ8IZ07 590 aa12.22□□□□□ -0.45
VRK3-216ENST00000599342 ZNF296Q8WUU4 475 aaPredicted RBP12.22□□□□□ -0.45
VRK3-216ENST00000599342 WNK4Q96J92 1243 aa12.22□□□□□ -0.45
VRK3-216ENST00000599342 CLMNQ96JQ2 1002 aa12.22□□□□□ -0.45
VRK3-216ENST00000599342 SIL1Q9H173 461 aa12.22□□□□□ -0.45
VRK3-216ENST00000599342 FBXO3Q9UK99 471 aa12.22□□□□□ -0.45
VRK3-216ENST00000599342 SUGT1Q9Y2Z0 365 aa12.22□□□□□ -0.45
VRK3-216ENST00000599342 GPR25O00155 361 aa12.21□□□□□ -0.45
VRK3-216ENST00000599342 USP2O75604 605 aaPredicted RBP12.21□□□□□ -0.45
VRK3-216ENST00000599342 CIAO1O76071 339 aa12.21□□□□□ -0.45
VRK3-216ENST00000599342 RARSP54136 660 aaKnown RBP12.21□□□□□ -0.45
VRK3-216ENST00000599342 GRIK5Q16478 980 aa12.21□□□□□ -0.45
VRK3-216ENST00000599342 PKN2Q16513 984 aaKnown RBP12.21□□□□□ -0.45
VRK3-216ENST00000599342 NOM1Q5C9Z4 860 aaKnown RBP12.21□□□□□ -0.45
VRK3-216ENST00000599342 WDR66Q8TBY9 1149 aa12.21□□□□□ -0.45
VRK3-216ENST00000599342 TMEM39BQ9GZU3 492 aa12.21□□□□□ -0.45
VRK3-216ENST00000599342 CEP126Q9P2H0 1117 aa12.21□□□□□ -0.45
VRK3-216ENST00000599342 LRRFIP2Q9Y608 721 aaKnown RBP12.21□□□□□ -0.45
VRK3-216ENST00000599342 IL15P40933 162 aaPredicted RBP12.2□□□□□ -0.46
VRK3-216ENST00000599342 RGS19P49795 217 aa12.2□□□□□ -0.46
VRK3-216ENST00000599342 ATP2B3Q16720 1220 aa12.2□□□□□ -0.46
VRK3-216ENST00000599342 OTUD7BQ6GQQ9 843 aa12.2□□□□□ -0.46
VRK3-216ENST00000599342 ATG9AQ7Z3C6 839 aa12.2□□□□□ -0.46
VRK3-216ENST00000599342 IFNL1Q8IU54 200 aa12.2□□□□□ -0.46
VRK3-216ENST00000599342 ZDHHC15Q96MV8 337 aa12.2□□□□□ -0.46
VRK3-216ENST00000599342 CFHR5Q9BXR6 569 aa12.2□□□□□ -0.46
VRK3-216ENST00000599342 GNL3LQ9NVN8 582 aaKnown RBP12.2□□□□□ -0.46
VRK3-216ENST00000599342 FKTNO75072 461 aa12.19□□□□□ -0.46
VRK3-216ENST00000599342 ARHGAP45Q92619 1136 aa12.19□□□□□ -0.46
VRK3-216ENST00000599342 OPTNQ96CV9 577 aa12.19□□□□□ -0.46
VRK3-216ENST00000599342 HOOK2Q96ED9 719 aa12.19□□□□□ -0.46
VRK3-216ENST00000599342 TEPSINQ96N21 525 aa12.19□□□□□ -0.46
VRK3-216ENST00000599342 MEIS3Q99687 375 aa12.19□□□□□ -0.46
VRK3-216ENST00000599342 MRIQ9BWK5 157 aa12.19□□□□□ -0.46
VRK3-216ENST00000599342 ELP3Q9H9T3 547 aa12.19□□□□□ -0.46
VRK3-216ENST00000599342 CSADQ9Y600 493 aa12.19□□□□□ -0.46
VRK3-216ENST00000599342 IPO8O15397 1037 aaKnown RBP12.18□□□□□ -0.46
VRK3-216ENST00000599342 GNAI3P08754 354 aa12.18□□□□□ -0.46
VRK3-216ENST00000599342 CACNB3P54284 484 aa12.18□□□□□ -0.46
VRK3-216ENST00000599342 INTS3Q68E01 1043 aaKnown RBP12.18□□□□□ -0.46
VRK3-216ENST00000599342 HHIPL2Q6UWX4 724 aa12.18□□□□□ -0.46
VRK3-216ENST00000599342 CDAN1Q8IWY9 1227 aa12.18□□□□□ -0.46
VRK3-216ENST00000599342 PA2G4Q9UQ80 394 aaKnown RBP12.18□□□□□ -0.46
VRK3-216ENST00000599342 MYH13Q9UKX3 1938 aa12.17□□□□□ -0.46
VRK3-216ENST00000599342 IGF2BP3O00425 579 aaKnown RBP eCLIP12.17□□□□□ -0.46
VRK3-216ENST00000599342 GJA5P36382 358 aa12.17□□□□□ -0.46
VRK3-216ENST00000599342 SOX10P56693 466 aa12.17□□□□□ -0.46
VRK3-216ENST00000599342 MAP3K9P80192 1104 aa12.17□□□□□ -0.46
VRK3-216ENST00000599342 VGLL4Q14135 290 aa12.17□□□□□ -0.46
VRK3-216ENST00000599342 FKBP1CQ5VVH2 108 aa12.17□□□□□ -0.46
VRK3-216ENST00000599342 APOBEC3HQ6NTF7 200 aaKnown RBP12.17□□□□□ -0.46
VRK3-216ENST00000599342 FAM83AQ86UY5 434 aa12.17□□□□□ -0.46
VRK3-216ENST00000599342 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.17□□□□□ -0.46
VRK3-216ENST00000599342 FRAT1Q92837 279 aaPredicted RBP12.17□□□□□ -0.46
VRK3-216ENST00000599342 COPRSQ9NQ92 184 aa12.17□□□□□ -0.46
VRK3-216ENST00000599342 DENND2AQ9ULE3 1009 aa12.17□□□□□ -0.46
VRK3-216ENST00000599342 HPS5Q9UPZ3 1129 aa12.17□□□□□ -0.46
VRK3-216ENST00000599342 OTOFQ9HC10 1997 aa12.16□□□□□ -0.46
VRK3-216ENST00000599342 LAMB1P07942 1786 aa12.16□□□□□ -0.46
VRK3-216ENST00000599342 SEMA3EO15041 775 aa12.16□□□□□ -0.46
VRK3-216ENST00000599342 SRGAP3O43295 1099 aa12.16□□□□□ -0.46
VRK3-216ENST00000599342 LDHBP07195 334 aaKnown RBP12.16□□□□□ -0.46
VRK3-216ENST00000599342 DCAF15Q66K64 600 aa12.16□□□□□ -0.46
VRK3-216ENST00000599342 FBXO46Q6PJ61 603 aaPredicted RBP12.16□□□□□ -0.46
VRK3-216ENST00000599342 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.16□□□□□ -0.46
VRK3-216ENST00000599342 ZGPATQ8N5A5 531 aaKnown RBP12.16□□□□□ -0.46
VRK3-216ENST00000599342 WRNIP1Q96S55 665 aa12.16□□□□□ -0.46
VRK3-216ENST00000599342 R3HDMLQ9H3Y0 253 aa12.16□□□□□ -0.46
VRK3-216ENST00000599342 RPAP1Q9BWH6 1393 aaPredicted RBP12.16□□□□□ -0.46
VRK3-216ENST00000599342 TRIM27P14373 513 aa12.15□□□□□ -0.46
VRK3-216ENST00000599342 PRDX5P30044 214 aa12.15□□□□□ -0.46
VRK3-216ENST00000599342 PHKA1P46020 1223 aa12.15□□□□□ -0.46
VRK3-216ENST00000599342 GTF2A2P52657 109 aa12.15□□□□□ -0.46
VRK3-216ENST00000599342 CRHR2Q13324 411 aa12.15□□□□□ -0.46
VRK3-216ENST00000599342 ATF7IPQ6VMQ6 1270 aa12.15□□□□□ -0.46
VRK3-216ENST00000599342 OTUD5Q96G74 571 aa12.15□□□□□ -0.46
VRK3-216ENST00000599342 AKAP2Q9Y2D5 859 aa12.15□□□□□ -0.46
VRK3-216ENST00000599342 DAGLAQ9Y4D2 1042 aa12.15□□□□□ -0.46
VRK3-216ENST00000599342 SALL1Q9NSC2 1324 aa12.14□□□□□ -0.47
VRK3-216ENST00000599342 CCL15-CCL14A0A0B4J2E2 113 aa12.14□□□□□ -0.47
VRK3-216ENST00000599342 TESPA1A2RU30 521 aaPredicted RBP12.14□□□□□ -0.47
VRK3-216ENST00000599342 MTX1Q13505 466 aa12.14□□□□□ -0.47
VRK3-216ENST00000599342 DIXDC1Q155Q3 683 aa12.14□□□□□ -0.47
VRK3-216ENST00000599342 CCL15Q16663 113 aa12.14□□□□□ -0.47
VRK3-216ENST00000599342 CCDC102BQ68D86 513 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms