RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 SMARCA5O60264 1052 aaPredicted RBP22.3■■□□□ 1.16
LIG1-216ENST00000598938 FRAT2O75474 233 aaPredicted RBP22.3■■□□□ 1.16
LIG1-216ENST00000598938 NEFLP07196 543 aa22.3■■□□□ 1.16
LIG1-216ENST00000598938 ARID4AP29374 1257 aaPredicted RBP22.3■■□□□ 1.16
LIG1-216ENST00000598938 SMC5Q8IY18 1101 aa22.3■■□□□ 1.16
LIG1-216ENST00000598938 MXD3Q9BW11 206 aa22.3■■□□□ 1.16
LIG1-216ENST00000598938 H7C1D1 291 aa22.29■■□□□ 1.16
LIG1-216ENST00000598938 HIRAP54198 1017 aaPredicted RBP22.29■■□□□ 1.16
LIG1-216ENST00000598938 CERS5Q8N5B7 392 aa22.29■■□□□ 1.16
LIG1-216ENST00000598938 CNOT7Q9UIV1 285 aaKnown RBP22.29■■□□□ 1.16
LIG1-216ENST00000598938 DENND2AQ9ULE3 1009 aa22.29■■□□□ 1.16
LIG1-216ENST00000598938 JAG2Q9Y219 1238 aa22.29■■□□□ 1.16
LIG1-216ENST00000598938 PDS5AQ29RF7 1337 aaKnown RBP22.29■■□□□ 1.16
LIG1-216ENST00000598938 MYH13Q9UKX3 1938 aa22.28■■□□□ 1.16
LIG1-216ENST00000598938 IFIT2P09913 472 aaKnown RBP22.28■■□□□ 1.16
LIG1-216ENST00000598938 UQCRFS1P1P0C7P4 283 aa22.28■■□□□ 1.16
LIG1-216ENST00000598938 CHAF1AQ13111 956 aaPredicted RBP22.28■■□□□ 1.16
LIG1-216ENST00000598938 RASGRF1Q13972 1273 aa22.28■■□□□ 1.16
LIG1-216ENST00000598938 CCDC158Q5M9N0 1113 aa22.28■■□□□ 1.16
LIG1-216ENST00000598938 ZNF512BQ96KM6 892 aaPredicted RBP22.28■■□□□ 1.16
LIG1-216ENST00000598938 TTC39AQ5SRH9 613 aa22.27■■□□□ 1.16
LIG1-216ENST00000598938 TRPM4Q8TD43 1214 aa22.27■■□□□ 1.16
LIG1-216ENST00000598938 TBC1D22AQ8WUA7 517 aa22.27■■□□□ 1.16
LIG1-216ENST00000598938 ZNF408Q9H9D4 720 aa22.27■■□□□ 1.16
LIG1-216ENST00000598938 MFSD14BQ5SR56 506 aa22.26■■□□□ 1.15
LIG1-216ENST00000598938 MICALL2Q8IY33 904 aa22.26■■□□□ 1.15
LIG1-216ENST00000598938 WDR66Q8TBY9 1149 aa22.26■■□□□ 1.15
LIG1-216ENST00000598938 HMG20BQ9P0W2 317 aa22.26■■□□□ 1.15
LIG1-216ENST00000598938 POLR2AP24928 1970 aaKnown RBP22.25■■□□□ 1.15
LIG1-216ENST00000598938 SHTN1A0MZ66 631 aa22.25■■□□□ 1.15
LIG1-216ENST00000598938 MCAMP43121 646 aa22.25■■□□□ 1.15
LIG1-216ENST00000598938 ZNF280AP59817 542 aaPredicted RBP22.25■■□□□ 1.15
LIG1-216ENST00000598938 DGKZQ13574 1117 aa22.25■■□□□ 1.15
LIG1-216ENST00000598938 SCARF1Q14162 830 aa22.25■■□□□ 1.15
LIG1-216ENST00000598938 ANKRD45Q5TZF3 282 aa22.25■■□□□ 1.15
LIG1-216ENST00000598938 SAGE1Q9NXZ1 904 aa22.25■■□□□ 1.15
LIG1-216ENST00000598938 PCDH10Q9P2E7 1040 aa22.25■■□□□ 1.15
LIG1-216ENST00000598938 AKAP11Q9UKA4 1901 aa22.25■■□□□ 1.15
LIG1-216ENST00000598938 SALL1Q9NSC2 1324 aa22.25■■□□□ 1.15
LIG1-216ENST00000598938 USP17L8P0C7I0 530 aa22.24■■□□□ 1.15
LIG1-216ENST00000598938 MMP14P50281 582 aa22.24■■□□□ 1.15
LIG1-216ENST00000598938 HUNKP57058 714 aa22.24■■□□□ 1.15
LIG1-216ENST00000598938 BCL11AQ9H165 835 aa22.24■■□□□ 1.15
LIG1-216ENST00000598938 PI16Q6UXB8 463 aa22.23■■□□□ 1.15
LIG1-216ENST00000598938 KIAA0825Q8IV33 1275 aa22.23■■□□□ 1.15
LIG1-216ENST00000598938 SPATA5Q8NB90 893 aa22.23■■□□□ 1.15
LIG1-216ENST00000598938 PDE4DIPQ5VU43 2346 aa22.23■■□□□ 1.15
LIG1-216ENST00000598938 TNRC18O15417 2968 aaPredicted RBP22.22■■□□□ 1.15
LIG1-216ENST00000598938 GRIK5Q16478 980 aa22.22■■□□□ 1.15
LIG1-216ENST00000598938 CCDC102AQ96A19 550 aa22.22■■□□□ 1.15
LIG1-216ENST00000598938 SUGT1Q9Y2Z0 365 aa22.22■■□□□ 1.15
LIG1-216ENST00000598938 NUCB1Q02818 461 aa22.21■■□□□ 1.15
LIG1-216ENST00000598938 RGMBQ6NW40 437 aa22.21■■□□□ 1.15
LIG1-216ENST00000598938 USP48Q86UV5 1035 aa22.21■■□□□ 1.15
LIG1-216ENST00000598938 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.21■■□□□ 1.15
LIG1-216ENST00000598938 ZBTB47Q9UFB7 747 aaPredicted RBP22.21■■□□□ 1.15
LIG1-216ENST00000598938 KRT26Q7Z3Y9 468 aa22.2■■□□□ 1.14
LIG1-216ENST00000598938 OGFOD1Q8N543 542 aa22.2■■□□□ 1.14
LIG1-216ENST00000598938 ZGPATQ8N5A5 531 aaKnown RBP22.2■■□□□ 1.14
LIG1-216ENST00000598938 C2orf69Q8N8R5 385 aa22.2■■□□□ 1.14
LIG1-216ENST00000598938 GBA2Q9HCG7 927 aaPredicted RBP22.2■■□□□ 1.14
LIG1-216ENST00000598938 SNRKQ9NRH2 765 aa22.2■■□□□ 1.14
LIG1-216ENST00000598938 HDAC9Q9UKV0 1011 aa22.2■■□□□ 1.14
LIG1-216ENST00000598938 SALL3Q9BXA9 1300 aa22.2■■□□□ 1.14
LIG1-216ENST00000598938 FAM155AB1AL88 458 aaPredicted RBP22.19■■□□□ 1.14
LIG1-216ENST00000598938 F8W031 263 aaPredicted RBP22.19■■□□□ 1.14
LIG1-216ENST00000598938 EGFRP00533 1210 aa22.19■■□□□ 1.14
LIG1-216ENST00000598938 ATP5JP18859 108 aa22.19■■□□□ 1.14
LIG1-216ENST00000598938 ZAP70P43403 619 aa22.19■■□□□ 1.14
LIG1-216ENST00000598938 ERICH6BQ5W0A0 696 aa22.19■■□□□ 1.14
LIG1-216ENST00000598938 B4GALNT3Q6L9W6 998 aa22.19■■□□□ 1.14
LIG1-216ENST00000598938 SAMD7Q7Z3H4 446 aa22.19■■□□□ 1.14
LIG1-216ENST00000598938 MYOZ2Q9NPC6 264 aa22.19■■□□□ 1.14
LIG1-216ENST00000598938 TTF2Q9UNY4 1162 aaKnown RBP22.19■■□□□ 1.14
LIG1-216ENST00000598938 PRDX5P30044 214 aa22.18■■□□□ 1.14
LIG1-216ENST00000598938 TBC1D10BQ4KMP7 808 aaPredicted RBP22.18■■□□□ 1.14
LIG1-216ENST00000598938 CHD1LQ86WJ1 897 aa22.18■■□□□ 1.14
LIG1-216ENST00000598938 OTUD7AQ8TE49 926 aaPredicted RBP22.18■■□□□ 1.14
LIG1-216ENST00000598938 DCPSQ96C86 337 aaKnown RBP22.18■■□□□ 1.14
LIG1-216ENST00000598938 ECHDC1Q9NTX5 307 aa22.18■■□□□ 1.14
LIG1-216ENST00000598938 CYP2E1P05181 493 aaPredicted RBP22.17■■□□□ 1.14
LIG1-216ENST00000598938 LDHBP07195 334 aaKnown RBP22.17■■□□□ 1.14
LIG1-216ENST00000598938 KIF4BQ2VIQ3 1234 aa22.17■■□□□ 1.14
LIG1-216ENST00000598938 MTMR14Q8NCE2 650 aa22.17■■□□□ 1.14
LIG1-216ENST00000598938 GPATCH3Q96I76 525 aa22.17■■□□□ 1.14
LIG1-216ENST00000598938 ZIC5Q96T25 663 aa22.17■■□□□ 1.14
LIG1-216ENST00000598938 LNPKQ9C0E8 428 aa22.17■■□□□ 1.14
LIG1-216ENST00000598938 MAST3O60307 1309 aa22.16■■□□□ 1.14
LIG1-216ENST00000598938 TTC41PQ6P2S7 1318 aa22.16■■□□□ 1.14
LIG1-216ENST00000598938 HDLBPQ00341 1268 aaKnown RBP22.16■■□□□ 1.14
LIG1-216ENST00000598938 SPTY2D1Q68D10 685 aaPredicted RBP22.16■■□□□ 1.14
LIG1-216ENST00000598938 REM2Q8IYK8 340 aaPredicted RBP22.16■■□□□ 1.14
LIG1-216ENST00000598938 ZBED3Q96IU2 234 aaPredicted RBP22.16■■□□□ 1.14
LIG1-216ENST00000598938 ABCF2Q9UG63 623 aa22.16■■□□□ 1.14
LIG1-216ENST00000598938 SERPINA10Q9UK55 444 aa22.16■■□□□ 1.14
LIG1-216ENST00000598938 RBM26Q5T8P6 1007 aaKnown RBP22.15■■□□□ 1.14
LIG1-216ENST00000598938 TBC1D9Q6ZT07 1266 aa22.15■■□□□ 1.14
LIG1-216ENST00000598938 MRIQ9BWK5 157 aa22.15■■□□□ 1.14
LIG1-216ENST00000598938 NDUFB9Q9Y6M9 179 aa22.15■■□□□ 1.14
LIG1-216ENST00000598938 MX1P20591 662 aa22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms