RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 TTLL12Q14166 644 aaPredicted RBP16.27■□□□□ 0.2
LIG1-212ENST00000596549 ATP2B3Q16720 1220 aa16.27■□□□□ 0.2
LIG1-212ENST00000596549 TMEM57Q8N5G2 664 aa16.27■□□□□ 0.2
LIG1-212ENST00000596549 TDRD3Q9H7E2 651 aaKnown RBP16.27■□□□□ 0.2
LIG1-212ENST00000596549 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.27■□□□□ 0.2
LIG1-212ENST00000596549 SRGAP3O43295 1099 aa16.26■□□□□ 0.19
LIG1-212ENST00000596549 IL15P40933 162 aaPredicted RBP16.26■□□□□ 0.19
LIG1-212ENST00000596549 ZKSCAN2Q63HK3 967 aa16.26■□□□□ 0.19
LIG1-212ENST00000596549 CDAN1Q8IWY9 1227 aa16.26■□□□□ 0.19
LIG1-212ENST00000596549 DZIP1LQ8IYY4 767 aaKnown RBP16.26■□□□□ 0.19
LIG1-212ENST00000596549 TBC1D22AQ8WUA7 517 aa16.26■□□□□ 0.19
LIG1-212ENST00000596549 CSRNP1Q96S65 589 aa16.26■□□□□ 0.19
LIG1-212ENST00000596549 ZNF70Q9UC06 446 aaPredicted RBP16.26■□□□□ 0.19
LIG1-212ENST00000596549 MYO5AQ9Y4I1 1855 aaKnown RBP16.25■□□□□ 0.19
LIG1-212ENST00000596549 PNMA6EA0A0J9YXQ4 647 aa16.25■□□□□ 0.19
LIG1-212ENST00000596549 FRAT2O75474 233 aaPredicted RBP16.25■□□□□ 0.19
LIG1-212ENST00000596549 LDLRAD1Q5T700 205 aa16.25■□□□□ 0.19
LIG1-212ENST00000596549 NBPF12Q5TAG4 269 aaPredicted RBP16.25■□□□□ 0.19
LIG1-212ENST00000596549 SAGE1Q9NXZ1 904 aa16.25■□□□□ 0.19
LIG1-212ENST00000596549 ANGEL1Q9UNK9 670 aaKnown RBP16.25■□□□□ 0.19
LIG1-212ENST00000596549 HDAC5Q9UQL6 1122 aa16.25■□□□□ 0.19
LIG1-212ENST00000596549 RLBP1P12271 317 aa16.24■□□□□ 0.19
LIG1-212ENST00000596549 ADORA1P30542 326 aa16.24■□□□□ 0.19
LIG1-212ENST00000596549 PHKA1P46020 1223 aa16.24■□□□□ 0.19
LIG1-212ENST00000596549 RASA3Q14644 834 aa16.24■□□□□ 0.19
LIG1-212ENST00000596549 MAP3K11Q16584 847 aa16.24■□□□□ 0.19
LIG1-212ENST00000596549 ARMC9Q7Z3E5 817 aa16.24■□□□□ 0.19
LIG1-212ENST00000596549 TEPSINQ96N21 525 aa16.24■□□□□ 0.19
LIG1-212ENST00000596549 CEP126Q9P2H0 1117 aa16.24■□□□□ 0.19
LIG1-212ENST00000596549 HDLBPQ00341 1268 aaKnown RBP16.23■□□□□ 0.19
LIG1-212ENST00000596549 MKRN3Q13064 507 aaKnown RBP16.23■□□□□ 0.19
LIG1-212ENST00000596549 RNF186Q9NXI6 227 aa16.23■□□□□ 0.19
LIG1-212ENST00000596549 CDK5RAP2Q96SN8 1893 aa16.22■□□□□ 0.19
LIG1-212ENST00000596549 MAST3O60307 1309 aa16.22■□□□□ 0.19
LIG1-212ENST00000596549 GNAI2P04899 355 aa16.22■□□□□ 0.19
LIG1-212ENST00000596549 PRDX5P30044 214 aa16.22■□□□□ 0.19
LIG1-212ENST00000596549 CACNB3P54284 484 aa16.22■□□□□ 0.19
LIG1-212ENST00000596549 TNFAIP1Q13829 316 aa16.22■□□□□ 0.19
LIG1-212ENST00000596549 TEKT1Q969V4 418 aa16.22■□□□□ 0.19
LIG1-212ENST00000596549 CLMNQ96JQ2 1002 aa16.22■□□□□ 0.19
LIG1-212ENST00000596549 ZDHHC15Q96MV8 337 aa16.22■□□□□ 0.19
LIG1-212ENST00000596549 SUGT1Q9Y2Z0 365 aa16.22■□□□□ 0.19
LIG1-212ENST00000596549 SALL1Q9NSC2 1324 aa16.21■□□□□ 0.19
LIG1-212ENST00000596549 AK9Q5TCS8 1911 aa16.21■□□□□ 0.19
LIG1-212ENST00000596549 A0A1B0GUL7 405 aa16.21■□□□□ 0.19
LIG1-212ENST00000596549 TCP10L2B9ZVM9 353 aa16.21■□□□□ 0.19
LIG1-212ENST00000596549 TRPA1O75762 1119 aa16.21■□□□□ 0.19
LIG1-212ENST00000596549 TFCP2Q12800 502 aa16.21■□□□□ 0.19
LIG1-212ENST00000596549 CCDC102BQ68D86 513 aa16.21■□□□□ 0.19
LIG1-212ENST00000596549 APOBEC3HQ6NTF7 200 aaKnown RBP16.21■□□□□ 0.19
LIG1-212ENST00000596549 WDR66Q8TBY9 1149 aa16.21■□□□□ 0.19
LIG1-212ENST00000596549 TMEM39BQ9GZU3 492 aa16.21■□□□□ 0.19
LIG1-212ENST00000596549 RPAP1Q9BWH6 1393 aaPredicted RBP16.21■□□□□ 0.19
LIG1-212ENST00000596549 FOCADQ5VW36 1801 aa16.2■□□□□ 0.18
LIG1-212ENST00000596549 ZBTB22O15209 634 aa16.2■□□□□ 0.18
LIG1-212ENST00000596549 RASGRF1Q13972 1273 aa16.2■□□□□ 0.18
LIG1-212ENST00000596549 SPRYD7Q5W111 196 aa16.2■□□□□ 0.18
LIG1-212ENST00000596549 C1orf115Q9H7X2 142 aa16.2■□□□□ 0.18
LIG1-212ENST00000596549 RFX7Q2KHR2 1363 aa16.19■□□□□ 0.18
LIG1-212ENST00000596549 SEMA3EO15041 775 aa16.19■□□□□ 0.18
LIG1-212ENST00000596549 PPP1R12BO60237 982 aaPredicted RBP16.19■□□□□ 0.18
LIG1-212ENST00000596549 USP2O75604 605 aaPredicted RBP16.19■□□□□ 0.18
LIG1-212ENST00000596549 TIMM10P62072 90 aa16.19■□□□□ 0.18
LIG1-212ENST00000596549 POLA2Q14181 598 aa16.19■□□□□ 0.18
LIG1-212ENST00000596549 DIXDC1Q155Q3 683 aa16.19■□□□□ 0.18
LIG1-212ENST00000596549 SUPT20HL1Q3ZLR7 823 aa16.19■□□□□ 0.18
LIG1-212ENST00000596549 HHIPL2Q6UWX4 724 aa16.19■□□□□ 0.18
LIG1-212ENST00000596549 REM2Q8IYK8 340 aaPredicted RBP16.19■□□□□ 0.18
LIG1-212ENST00000596549 MRIQ9BWK5 157 aa16.19■□□□□ 0.18
LIG1-212ENST00000596549 DAGLAQ9Y4D2 1042 aa16.19■□□□□ 0.18
LIG1-212ENST00000596549 GJA5P36382 358 aa16.18■□□□□ 0.18
LIG1-212ENST00000596549 ITPRIPQ8IWB1 547 aa16.18■□□□□ 0.18
LIG1-212ENST00000596549 FTSJ3Q8IY81 847 aaKnown RBP16.18■□□□□ 0.18
LIG1-212ENST00000596549 XAGE2Q96GT9 111 aa16.18■□□□□ 0.18
LIG1-212ENST00000596549 ABHD8Q96I13 439 aa16.18■□□□□ 0.18
LIG1-212ENST00000596549 WNK4Q96J92 1243 aa16.18■□□□□ 0.18
LIG1-212ENST00000596549 DENND2AQ9ULE3 1009 aa16.18■□□□□ 0.18
LIG1-212ENST00000596549 PDS5AQ29RF7 1337 aaKnown RBP16.18■□□□□ 0.18
LIG1-212ENST00000596549 SIPA1L1O43166 1804 aa16.17■□□□□ 0.18
LIG1-212ENST00000596549 DOCK1Q14185 1865 aa16.17■□□□□ 0.18
LIG1-212ENST00000596549 TM4SF4P48230 202 aa16.17■□□□□ 0.18
LIG1-212ENST00000596549 TNNI2P48788 182 aa16.17■□□□□ 0.18
LIG1-212ENST00000596549 MCOLN1Q9GZU1 580 aa16.17■□□□□ 0.18
LIG1-212ENST00000596549 GNL3LQ9NVN8 582 aaKnown RBP16.17■□□□□ 0.18
LIG1-212ENST00000596549 ATAD5Q96QE3 1844 aa16.17■□□□□ 0.18
LIG1-212ENST00000596549 PTPRFP10586 1907 aa16.16■□□□□ 0.18
LIG1-212ENST00000596549 ZBTB7BO15156 539 aaPredicted RBP16.16■□□□□ 0.18
LIG1-212ENST00000596549 ZBTB48P10074 688 aaPredicted RBP16.16■□□□□ 0.18
LIG1-212ENST00000596549 IREB2P48200 963 aaKnown RBP16.16■□□□□ 0.18
LIG1-212ENST00000596549 FAM83AQ86UY5 434 aa16.16■□□□□ 0.18
LIG1-212ENST00000596549 ANKRD13AQ8IZ07 590 aa16.16■□□□□ 0.18
LIG1-212ENST00000596549 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.16■□□□□ 0.18
LIG1-212ENST00000596549 SSH3Q8TE77 659 aa16.16■□□□□ 0.18
LIG1-212ENST00000596549 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.16■□□□□ 0.18
LIG1-212ENST00000596549 AKAP2Q9Y2D5 859 aa16.16■□□□□ 0.18
LIG1-212ENST00000596549 PHIPQ8WWQ0 1821 aa16.16■□□□□ 0.18
LIG1-212ENST00000596549 ZSWIM8A7E2V4 1837 aa16.15■□□□□ 0.18
LIG1-212ENST00000596549 UNCXA6NJT0 531 aa16.15■□□□□ 0.18
LIG1-212ENST00000596549 SLC34A2O95436 690 aa16.15■□□□□ 0.18
LIG1-212ENST00000596549 LDHBP07195 334 aaKnown RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms