RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 A0A1B0GUL6 1792 aa12.63□□□□□ -0.39
LIG1-209ENST00000596104 LAMB1P07942 1786 aa12.62□□□□□ -0.39
LIG1-209ENST00000596104 CRKP46108 304 aa12.62□□□□□ -0.39
LIG1-209ENST00000596104 VGLL4Q14135 290 aa12.62□□□□□ -0.39
LIG1-209ENST00000596104 FBXO33Q7Z6M2 555 aa12.62□□□□□ -0.39
LIG1-209ENST00000596104 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.62□□□□□ -0.39
LIG1-209ENST00000596104 GCC1Q96CN9 775 aa12.62□□□□□ -0.39
LIG1-209ENST00000596104 TMEM39BQ9GZU3 492 aa12.62□□□□□ -0.39
LIG1-209ENST00000596104 MRS2Q9HD23 443 aa12.62□□□□□ -0.39
LIG1-209ENST00000596104 C9orf78Q9NZ63 289 aaPredicted RBP12.62□□□□□ -0.39
LIG1-209ENST00000596104 TCP10L2B9ZVM9 353 aa12.61□□□□□ -0.39
LIG1-209ENST00000596104 EN2P19622 333 aaPredicted RBP12.61□□□□□ -0.39
LIG1-209ENST00000596104 MAP3K9P80192 1104 aa12.61□□□□□ -0.39
LIG1-209ENST00000596104 SRCIN1Q9C0H9 1055 aa12.61□□□□□ -0.39
LIG1-209ENST00000596104 UTYO14607 1347 aa12.61□□□□□ -0.39
LIG1-209ENST00000596104 ECM29Q5VYK3 1845 aa12.6□□□□□ -0.39
LIG1-209ENST00000596104 CCL15-CCL14A0A0B4J2E2 113 aa12.6□□□□□ -0.39
LIG1-209ENST00000596104 NBPF7P0C2Y1 421 aaPredicted RBP12.6□□□□□ -0.39
LIG1-209ENST00000596104 GTF2A2P52657 109 aa12.6□□□□□ -0.39
LIG1-209ENST00000596104 HDLBPQ00341 1268 aaKnown RBP12.6□□□□□ -0.39
LIG1-209ENST00000596104 CCL15Q16663 113 aa12.6□□□□□ -0.39
LIG1-209ENST00000596104 RABL6Q3YEC7 729 aaPredicted RBP12.6□□□□□ -0.39
LIG1-209ENST00000596104 HABP4Q5JVS0 413 aaKnown RBP12.6□□□□□ -0.39
LIG1-209ENST00000596104 SLC4A10Q6U841 1118 aa12.6□□□□□ -0.39
LIG1-209ENST00000596104 FAM43AQ8N2R8 423 aa12.6□□□□□ -0.39
LIG1-209ENST00000596104 ZNF333Q96JL9 665 aa12.6□□□□□ -0.39
LIG1-209ENST00000596104 MROH5Q6ZUA9 1318 aa12.6□□□□□ -0.39
LIG1-209ENST00000596104 SPDYE5A6NIY4 337 aa12.59□□□□□ -0.39
LIG1-209ENST00000596104 TNNI2P48788 182 aa12.59□□□□□ -0.39
LIG1-209ENST00000596104 TAF1CQ15572 869 aaPredicted RBP12.59□□□□□ -0.39
LIG1-209ENST00000596104 LRRC24Q50LG9 513 aa12.59□□□□□ -0.39
LIG1-209ENST00000596104 VGLL2Q8N8G2 317 aa12.59□□□□□ -0.39
LIG1-209ENST00000596104 OTUD5Q96G74 571 aa12.59□□□□□ -0.39
LIG1-209ENST00000596104 ZFYVE28Q9HCC9 887 aa12.59□□□□□ -0.39
LIG1-209ENST00000596104 IQSEC3Q9UPP2 1182 aaPredicted RBP12.59□□□□□ -0.39
LIG1-209ENST00000596104 PTCH2Q9Y6C5 1203 aa12.59□□□□□ -0.39
LIG1-209ENST00000596104 SNCAIPQ9Y6H5 919 aa12.59□□□□□ -0.39
LIG1-209ENST00000596104 MKI67P46013 3256 aaKnown RBP12.59□□□□□ -0.39
LIG1-209ENST00000596104 CACNB3P54284 484 aa12.58□□□□□ -0.4
LIG1-209ENST00000596104 CHAF1AQ13111 956 aaPredicted RBP12.58□□□□□ -0.4
LIG1-209ENST00000596104 ANKRD44Q8N8A2 993 aa12.58□□□□□ -0.4
LIG1-209ENST00000596104 TBC1D22AQ8WUA7 517 aa12.58□□□□□ -0.4
LIG1-209ENST00000596104 ZDHHC15Q96MV8 337 aa12.58□□□□□ -0.4
LIG1-209ENST00000596104 BICC1Q9H694 974 aaKnown RBP12.58□□□□□ -0.4
LIG1-209ENST00000596104 CSADQ9Y600 493 aa12.58□□□□□ -0.4
LIG1-209ENST00000596104 KIAA0100Q14667 2235 aaKnown RBP12.58□□□□□ -0.4
LIG1-209ENST00000596104 OTOFQ9HC10 1997 aa12.58□□□□□ -0.4
LIG1-209ENST00000596104 PDE8BO95263 885 aa12.57□□□□□ -0.4
LIG1-209ENST00000596104 ARHGEF6Q15052 776 aa12.57□□□□□ -0.4
LIG1-209ENST00000596104 METTL24Q5JXM2 366 aa12.57□□□□□ -0.4
LIG1-209ENST00000596104 FKBP1CQ5VVH2 108 aa12.57□□□□□ -0.4
LIG1-209ENST00000596104 APOBEC3HQ6NTF7 200 aaKnown RBP12.57□□□□□ -0.4
LIG1-209ENST00000596104 FAM83AQ86UY5 434 aa12.57□□□□□ -0.4
LIG1-209ENST00000596104 VPS37DQ86XT2 251 aa12.57□□□□□ -0.4
LIG1-209ENST00000596104 ERO1BQ86YB8 467 aa12.57□□□□□ -0.4
LIG1-209ENST00000596104 TEKT1Q969V4 418 aa12.57□□□□□ -0.4
LIG1-209ENST00000596104 MRIQ9BWK5 157 aa12.57□□□□□ -0.4
LIG1-209ENST00000596104 ZCCHC17Q9NP64 241 aaKnown RBP12.57□□□□□ -0.4
LIG1-209ENST00000596104 CACNA1FO60840 1977 aa12.57□□□□□ -0.4
LIG1-209ENST00000596104 BTBD19C9JJ37 291 aa12.56□□□□□ -0.4
LIG1-209ENST00000596104 TLR2O60603 784 aa12.56□□□□□ -0.4
LIG1-209ENST00000596104 BCAMP50895 628 aa12.56□□□□□ -0.4
LIG1-209ENST00000596104 SLC9C1Q4G0N8 1177 aa12.56□□□□□ -0.4
LIG1-209ENST00000596104 CAVIN4Q5BKX8 364 aa12.56□□□□□ -0.4
LIG1-209ENST00000596104 WRNIP1Q96S55 665 aa12.56□□□□□ -0.4
LIG1-209ENST00000596104 TMEM106CQ9BVX2 250 aa12.56□□□□□ -0.4
LIG1-209ENST00000596104 SUGT1Q9Y2Z0 365 aa12.56□□□□□ -0.4
LIG1-209ENST00000596104 ARAP2Q8WZ64 1704 aa12.55□□□□□ -0.4
LIG1-209ENST00000596104 IRF6O14896 467 aa12.55□□□□□ -0.4
LIG1-209ENST00000596104 FRAT2O75474 233 aaPredicted RBP12.55□□□□□ -0.4
LIG1-209ENST00000596104 CETPP11597 493 aa12.55□□□□□ -0.4
LIG1-209ENST00000596104 FGFR2P21802 821 aa12.55□□□□□ -0.4
LIG1-209ENST00000596104 KLHDC4Q8TBB5 520 aa12.55□□□□□ -0.4
LIG1-209ENST00000596104 ZKSCAN4Q969J2 545 aaPredicted RBP12.55□□□□□ -0.4
LIG1-209ENST00000596104 ARHGAP39Q9C0H5 1083 aa12.55□□□□□ -0.4
LIG1-209ENST00000596104 RBBP6Q7Z6E9 1792 aaKnown RBP12.55□□□□□ -0.4
LIG1-209ENST00000596104 ZNF521Q96K83 1311 aa12.55□□□□□ -0.4
LIG1-209ENST00000596104 KIF16BQ96L93 1317 aa12.55□□□□□ -0.4
LIG1-209ENST00000596104 RPAP1Q9BWH6 1393 aaPredicted RBP12.55□□□□□ -0.4
LIG1-209ENST00000596104 LACTBP83111 547 aaPredicted RBP12.54□□□□□ -0.4
LIG1-209ENST00000596104 PPIL2Q13356 520 aa12.54□□□□□ -0.4
LIG1-209ENST00000596104 SNAPC2Q13487 334 aa12.54□□□□□ -0.4
LIG1-209ENST00000596104 HHIPL2Q6UWX4 724 aa12.54□□□□□ -0.4
LIG1-209ENST00000596104 NBPF11Q86T75 865 aa12.54□□□□□ -0.4
LIG1-209ENST00000596104 MRPL50Q8N5N7 158 aaKnown RBP12.54□□□□□ -0.4
LIG1-209ENST00000596104 TMOD2Q9NZR1 351 aa12.54□□□□□ -0.4
LIG1-209ENST00000596104 CENPFP49454 3210 aa12.54□□□□□ -0.4
LIG1-209ENST00000596104 ANP32CO43423 234 aa12.53□□□□□ -0.4
LIG1-209ENST00000596104 WDHD1O75717 1129 aaPredicted RBP12.53□□□□□ -0.4
LIG1-209ENST00000596104 INPP5BP32019 993 aa12.53□□□□□ -0.4
LIG1-209ENST00000596104 FXR1P51114 621 aaKnown RBP eCLIP12.53□□□□□ -0.4
LIG1-209ENST00000596104 PUM3Q15397 648 aaKnown RBP12.53□□□□□ -0.4
LIG1-209ENST00000596104 C17orf99Q6UX52 265 aa12.53□□□□□ -0.4
LIG1-209ENST00000596104 SH3TC2Q8TF17 1288 aa12.53□□□□□ -0.4
LIG1-209ENST00000596104 HOOK2Q96ED9 719 aa12.53□□□□□ -0.4
LIG1-209ENST00000596104 USP44Q9H0E7 712 aa12.53□□□□□ -0.4
LIG1-209ENST00000596104 MAST3O60307 1309 aa12.53□□□□□ -0.4
LIG1-209ENST00000596104 BRCA2P51587 3418 aa12.52□□□□□ -0.4
LIG1-209ENST00000596104 GNRH1P01148 92 aa12.52□□□□□ -0.41
LIG1-209ENST00000596104 IFIT1P09914 478 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms