RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 CEP126Q9P2H0 1117 aa12.84□□□□□ -0.35
SHKBP1-210ENST00000595874 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.84□□□□□ -0.35
SHKBP1-210ENST00000595874 COL1A1P02452 1464 aaPredicted RBP12.84□□□□□ -0.35
SHKBP1-210ENST00000595874 PHKA1P46020 1223 aa12.83□□□□□ -0.36
SHKBP1-210ENST00000595874 TIMM10P62072 90 aa12.83□□□□□ -0.36
SHKBP1-210ENST00000595874 FKBP1AP62942 108 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-210ENST00000595874 TFCP2Q12800 502 aa12.83□□□□□ -0.36
SHKBP1-210ENST00000595874 DGKZQ13574 1117 aa12.83□□□□□ -0.36
SHKBP1-210ENST00000595874 ABHD8Q96I13 439 aa12.83□□□□□ -0.36
SHKBP1-210ENST00000595874 BCL11AQ9H165 835 aa12.83□□□□□ -0.36
SHKBP1-210ENST00000595874 AKAP11Q9UKA4 1901 aa12.83□□□□□ -0.36
SHKBP1-210ENST00000595874 DIXDC1Q155Q3 683 aa12.82□□□□□ -0.36
SHKBP1-210ENST00000595874 ZKSCAN2Q63HK3 967 aa12.82□□□□□ -0.36
SHKBP1-210ENST00000595874 INTS3Q68E01 1043 aaKnown RBP12.82□□□□□ -0.36
SHKBP1-210ENST00000595874 ATF7IPQ6VMQ6 1270 aa12.82□□□□□ -0.36
SHKBP1-210ENST00000595874 MTMR14Q8NCE2 650 aa12.82□□□□□ -0.36
SHKBP1-210ENST00000595874 NEUROD6Q96NK8 337 aa12.82□□□□□ -0.36
SHKBP1-210ENST00000595874 MCOLN1Q9GZU1 580 aa12.82□□□□□ -0.36
SHKBP1-210ENST00000595874 ELP3Q9H9T3 547 aa12.82□□□□□ -0.36
SHKBP1-210ENST00000595874 PNMA6EA0A0J9YXQ4 647 aa12.81□□□□□ -0.36
SHKBP1-210ENST00000595874 IPO8O15397 1037 aaKnown RBP12.81□□□□□ -0.36
SHKBP1-210ENST00000595874 GNAI3P08754 354 aa12.81□□□□□ -0.36
SHKBP1-210ENST00000595874 FKBP1BP68106 108 aa12.81□□□□□ -0.36
SHKBP1-210ENST00000595874 SPDYE2Q495Y8 402 aa12.81□□□□□ -0.36
SHKBP1-210ENST00000595874 CNKSR2Q8WXI2 1034 aa12.81□□□□□ -0.36
SHKBP1-210ENST00000595874 LPIN2Q92539 896 aa12.81□□□□□ -0.36
SHKBP1-210ENST00000595874 SLC10A4Q96EP9 437 aa12.81□□□□□ -0.36
SHKBP1-210ENST00000595874 USP2O75604 605 aaPredicted RBP12.8□□□□□ -0.36
SHKBP1-210ENST00000595874 PRDX5P30044 214 aa12.8□□□□□ -0.36
SHKBP1-210ENST00000595874 IL15P40933 162 aaPredicted RBP12.8□□□□□ -0.36
SHKBP1-210ENST00000595874 ITPRIPQ8IWB1 547 aa12.8□□□□□ -0.36
SHKBP1-210ENST00000595874 TEKT1Q969V4 418 aa12.8□□□□□ -0.36
SHKBP1-210ENST00000595874 R3HDMLQ9H3Y0 253 aa12.8□□□□□ -0.36
SHKBP1-210ENST00000595874 SERPINA10Q9UK55 444 aa12.8□□□□□ -0.36
SHKBP1-210ENST00000595874 OTOFQ9HC10 1997 aa12.8□□□□□ -0.36
SHKBP1-210ENST00000595874 CA12O43570 354 aa12.79□□□□□ -0.36
SHKBP1-210ENST00000595874 CIAO1O76071 339 aa12.79□□□□□ -0.36
SHKBP1-210ENST00000595874 ECM2O94769 699 aaPredicted RBP12.79□□□□□ -0.36
SHKBP1-210ENST00000595874 GNAI2P04899 355 aa12.79□□□□□ -0.36
SHKBP1-210ENST00000595874 RLBP1P12271 317 aa12.79□□□□□ -0.36
SHKBP1-210ENST00000595874 GJA5P36382 358 aa12.79□□□□□ -0.36
SHKBP1-210ENST00000595874 TCP10Q12799 353 aa12.79□□□□□ -0.36
SHKBP1-210ENST00000595874 SPRYD7Q5W111 196 aa12.79□□□□□ -0.36
SHKBP1-210ENST00000595874 FTSJ3Q8IY81 847 aaKnown RBP12.79□□□□□ -0.36
SHKBP1-210ENST00000595874 TBC1D22AQ8WUA7 517 aa12.79□□□□□ -0.36
SHKBP1-210ENST00000595874 ARHGAP45Q92619 1136 aa12.79□□□□□ -0.36
SHKBP1-210ENST00000595874 ABCF2Q9UG63 623 aa12.79□□□□□ -0.36
SHKBP1-210ENST00000595874 A0A1B0GUL7 405 aa12.78□□□□□ -0.36
SHKBP1-210ENST00000595874 PPP1R12BO60237 982 aaPredicted RBP12.78□□□□□ -0.36
SHKBP1-210ENST00000595874 SUPT20HL1Q3ZLR7 823 aa12.78□□□□□ -0.36
SHKBP1-210ENST00000595874 LDLRAD1Q5T700 205 aa12.78□□□□□ -0.36
SHKBP1-210ENST00000595874 CCDC102BQ68D86 513 aa12.78□□□□□ -0.36
SHKBP1-210ENST00000595874 PI16Q6UXB8 463 aa12.78□□□□□ -0.36
SHKBP1-210ENST00000595874 PANK1Q8TE04 598 aa12.78□□□□□ -0.36
SHKBP1-210ENST00000595874 XAGE2Q96GT9 111 aa12.78□□□□□ -0.36
SHKBP1-210ENST00000595874 WNK4Q96J92 1243 aa12.78□□□□□ -0.36
SHKBP1-210ENST00000595874 COPRSQ9NQ92 184 aa12.78□□□□□ -0.36
SHKBP1-210ENST00000595874 LDHBP07195 334 aaKnown RBP12.77□□□□□ -0.37
SHKBP1-210ENST00000595874 IREB2P48200 963 aaKnown RBP12.77□□□□□ -0.37
SHKBP1-210ENST00000595874 TNNI2P48788 182 aa12.77□□□□□ -0.37
SHKBP1-210ENST00000595874 MMP14P50281 582 aa12.77□□□□□ -0.37
SHKBP1-210ENST00000595874 G3BP1Q13283 466 aaKnown RBP eCLIP12.77□□□□□ -0.37
SHKBP1-210ENST00000595874 OS9Q13438 667 aaPredicted RBP12.77□□□□□ -0.37
SHKBP1-210ENST00000595874 GORABQ5T7V8 394 aa12.77□□□□□ -0.37
SHKBP1-210ENST00000595874 APOBEC3HQ6NTF7 200 aaKnown RBP12.77□□□□□ -0.37
SHKBP1-210ENST00000595874 MIGA2Q7L4E1 593 aa12.77□□□□□ -0.37
SHKBP1-210ENST00000595874 WDR66Q8TBY9 1149 aa12.77□□□□□ -0.37
SHKBP1-210ENST00000595874 TEPSINQ96N21 525 aa12.77□□□□□ -0.37
SHKBP1-210ENST00000595874 GNL3LQ9NVN8 582 aaKnown RBP12.77□□□□□ -0.37
SHKBP1-210ENST00000595874 TMOD2Q9NZR1 351 aa12.77□□□□□ -0.37
SHKBP1-210ENST00000595874 HDAC5Q9UQL6 1122 aa12.77□□□□□ -0.37
SHKBP1-210ENST00000595874 DAGLAQ9Y4D2 1042 aa12.77□□□□□ -0.37
SHKBP1-210ENST00000595874 PPP2R3BQ9Y5P8 575 aa12.77□□□□□ -0.37
SHKBP1-210ENST00000595874 AK9Q5TCS8 1911 aa12.77□□□□□ -0.37
SHKBP1-210ENST00000595874 SLURP2P0DP57 97 aa12.76□□□□□ -0.37
SHKBP1-210ENST00000595874 TNFAIP1Q13829 316 aa12.76□□□□□ -0.37
SHKBP1-210ENST00000595874 RASGRF1Q13972 1273 aa12.76□□□□□ -0.37
SHKBP1-210ENST00000595874 TBC1D9Q6ZT07 1266 aa12.76□□□□□ -0.37
SHKBP1-210ENST00000595874 OPTNQ96CV9 577 aa12.76□□□□□ -0.37
SHKBP1-210ENST00000595874 SNRKQ9NRH2 765 aa12.76□□□□□ -0.37
SHKBP1-210ENST00000595874 USP40Q9NVE5 1235 aa12.76□□□□□ -0.37
SHKBP1-210ENST00000595874 NFIAQ12857 509 aa12.75□□□□□ -0.37
SHKBP1-210ENST00000595874 PICALMQ13492 652 aa12.75□□□□□ -0.37
SHKBP1-210ENST00000595874 CDC42EP5Q6NZY7 148 aa12.75□□□□□ -0.37
SHKBP1-210ENST00000595874 ZBED9Q6R2W3 1325 aa12.75□□□□□ -0.37
SHKBP1-210ENST00000595874 ZFPM1Q8IX07 1006 aa12.75□□□□□ -0.37
SHKBP1-210ENST00000595874 ZNF296Q8WUU4 475 aaPredicted RBP12.75□□□□□ -0.37
SHKBP1-210ENST00000595874 ZKSCAN4Q969J2 545 aaPredicted RBP12.75□□□□□ -0.37
SHKBP1-210ENST00000595874 OTUD5Q96G74 571 aa12.75□□□□□ -0.37
SHKBP1-210ENST00000595874 ZDHHC15Q96MV8 337 aa12.75□□□□□ -0.37
SHKBP1-210ENST00000595874 SAGE1Q9NXZ1 904 aa12.75□□□□□ -0.37
SHKBP1-210ENST00000595874 DENND2AQ9ULE3 1009 aa12.75□□□□□ -0.37
SHKBP1-210ENST00000595874 MAST3O60307 1309 aa12.74□□□□□ -0.37
SHKBP1-210ENST00000595874 APBB1O00213 710 aa12.74□□□□□ -0.37
SHKBP1-210ENST00000595874 IGF2BP3O00425 579 aaKnown RBP eCLIP12.74□□□□□ -0.37
SHKBP1-210ENST00000595874 SURF6O75683 361 aaKnown RBP12.74□□□□□ -0.37
SHKBP1-210ENST00000595874 SOX10P56693 466 aa12.74□□□□□ -0.37
SHKBP1-210ENST00000595874 SREBF2Q12772 1141 aa12.74□□□□□ -0.37
SHKBP1-210ENST00000595874 VGLL4Q14135 290 aa12.74□□□□□ -0.37
SHKBP1-210ENST00000595874 DZIP1Q86YF9 867 aaKnown RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms