RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 RNF186Q9NXI6 227 aa18.73■□□□□ 0.59
TRIM28-205ENST00000595028 SERPINA10Q9UK55 444 aa18.73■□□□□ 0.59
TRIM28-205ENST00000595028 AOX1Q06278 1338 aa18.73■□□□□ 0.59
TRIM28-205ENST00000595028 MYO1BO43795 1136 aa18.72■□□□□ 0.59
TRIM28-205ENST00000595028 FKBP1BP68106 108 aa18.72■□□□□ 0.59
TRIM28-205ENST00000595028 KIF23Q02241 960 aaPredicted RBP18.72■□□□□ 0.59
TRIM28-205ENST00000595028 GRIK5Q16478 980 aa18.72■□□□□ 0.59
TRIM28-205ENST00000595028 RGMBQ6NW40 437 aa18.72■□□□□ 0.59
TRIM28-205ENST00000595028 PRMT6Q96LA8 375 aaPredicted RBP18.72■□□□□ 0.59
TRIM28-205ENST00000595028 RCAN3Q9UKA8 241 aa18.72■□□□□ 0.59
TRIM28-205ENST00000595028 ZBTB7BO15156 539 aaPredicted RBP18.71■□□□□ 0.59
TRIM28-205ENST00000595028 MS4A1P11836 297 aa18.71■□□□□ 0.59
TRIM28-205ENST00000595028 ADORA1P30542 326 aa18.71■□□□□ 0.59
TRIM28-205ENST00000595028 RBM5P52756 815 aaKnown RBP eCLIP18.71■□□□□ 0.59
TRIM28-205ENST00000595028 TFCP2Q12800 502 aa18.71■□□□□ 0.59
TRIM28-205ENST00000595028 POLA2Q14181 598 aa18.71■□□□□ 0.59
TRIM28-205ENST00000595028 PRAMEF18Q5VWM3 479 aa18.71■□□□□ 0.59
TRIM28-205ENST00000595028 CTU1Q7Z7A3 348 aaKnown RBP18.71■□□□□ 0.59
TRIM28-205ENST00000595028 GNL3LQ9NVN8 582 aaKnown RBP18.71■□□□□ 0.59
TRIM28-205ENST00000595028 CLRN2A0PK11 232 aa18.7■□□□□ 0.58
TRIM28-205ENST00000595028 PHKA1P46020 1223 aa18.7■□□□□ 0.58
TRIM28-205ENST00000595028 CRKP46108 304 aa18.7■□□□□ 0.58
TRIM28-205ENST00000595028 WDR66Q8TBY9 1149 aa18.7■□□□□ 0.58
TRIM28-205ENST00000595028 SSH3Q8TE77 659 aa18.7■□□□□ 0.58
TRIM28-205ENST00000595028 AKAP2Q9Y2D5 859 aa18.7■□□□□ 0.58
TRIM28-205ENST00000595028 SUGT1Q9Y2Z0 365 aa18.7■□□□□ 0.58
TRIM28-205ENST00000595028 MAST3O60307 1309 aa18.7■□□□□ 0.58
TRIM28-205ENST00000595028 SSC5DA1L4H1 1573 aa18.69■□□□□ 0.58
TRIM28-205ENST00000595028 A0A1B0GUL7 405 aa18.69■□□□□ 0.58
TRIM28-205ENST00000595028 SEMA3EO15041 775 aa18.69■□□□□ 0.58
TRIM28-205ENST00000595028 ZBTB22O15209 634 aa18.69■□□□□ 0.58
TRIM28-205ENST00000595028 NF2P35240 595 aa18.69■□□□□ 0.58
TRIM28-205ENST00000595028 HDLBPQ00341 1268 aaKnown RBP18.69■□□□□ 0.58
TRIM28-205ENST00000595028 SPDYE2Q495Y8 402 aa18.69■□□□□ 0.58
TRIM28-205ENST00000595028 CCDC102AQ96A19 550 aa18.69■□□□□ 0.58
TRIM28-205ENST00000595028 VEZTQ9HBM0 779 aa18.69■□□□□ 0.58
TRIM28-205ENST00000595028 HPS5Q9UPZ3 1129 aa18.69■□□□□ 0.58
TRIM28-205ENST00000595028 PPP2R3BQ9Y5P8 575 aa18.69■□□□□ 0.58
TRIM28-205ENST00000595028 ATP8B2P98198 1209 aa18.68■□□□□ 0.58
TRIM28-205ENST00000595028 G3BP1Q13283 466 aaKnown RBP eCLIP18.68■□□□□ 0.585e-10■□□□□ 10.2
TRIM28-205ENST00000595028 CCDC102BQ68D86 513 aa18.68■□□□□ 0.58
TRIM28-205ENST00000595028 DEFB129Q9H1M3 183 aa18.68■□□□□ 0.58
TRIM28-205ENST00000595028 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.68■□□□□ 0.58
TRIM28-205ENST00000595028 ZNF157P51786 506 aaPredicted RBP18.67■□□□□ 0.58
TRIM28-205ENST00000595028 MVPQ14764 893 aaKnown RBP18.67■□□□□ 0.58
TRIM28-205ENST00000595028 TEKT1Q969V4 418 aa18.67■□□□□ 0.58
TRIM28-205ENST00000595028 XAGE2Q96GT9 111 aa18.67■□□□□ 0.58
TRIM28-205ENST00000595028 DENND2AQ9ULE3 1009 aa18.67■□□□□ 0.58
TRIM28-205ENST00000595028 PDS5AQ29RF7 1337 aaKnown RBP18.67■□□□□ 0.58
TRIM28-205ENST00000595028 SALL1Q9NSC2 1324 aa18.67■□□□□ 0.58
TRIM28-205ENST00000595028 MKI67P46013 3256 aaKnown RBP18.67■□□□□ 0.58
TRIM28-205ENST00000595028 TIMM10P62072 90 aa18.66■□□□□ 0.58
TRIM28-205ENST00000595028 TNFAIP1Q13829 316 aa18.66■□□□□ 0.58
TRIM28-205ENST00000595028 RASGRF1Q13972 1273 aa18.66■□□□□ 0.58
TRIM28-205ENST00000595028 CEP85Q6P2H3 762 aa18.66■□□□□ 0.58
TRIM28-205ENST00000595028 MOB2Q70IA6 237 aa18.66■□□□□ 0.58
TRIM28-205ENST00000595028 GCC1Q96CN9 775 aa18.66■□□□□ 0.58
TRIM28-205ENST00000595028 CSRNP1Q96S65 589 aa18.66■□□□□ 0.58
TRIM28-205ENST00000595028 ZNF70Q9UC06 446 aaPredicted RBP18.66■□□□□ 0.58
TRIM28-205ENST00000595028 OTOFQ9HC10 1997 aa18.65■□□□□ 0.58
TRIM28-205ENST00000595028 SLC10A3P09131 477 aa18.65■□□□□ 0.58
TRIM28-205ENST00000595028 TTLL12Q14166 644 aaPredicted RBP18.65■□□□□ 0.58
TRIM28-205ENST00000595028 RASAL3Q86YV0 1011 aa18.65■□□□□ 0.58
TRIM28-205ENST00000595028 ZDHHC15Q96MV8 337 aa18.65■□□□□ 0.58
TRIM28-205ENST00000595028 MRIQ9BWK5 157 aa18.65■□□□□ 0.58
TRIM28-205ENST00000595028 TDRD3Q9H7E2 651 aaKnown RBP18.65■□□□□ 0.58
TRIM28-205ENST00000595028 DDX19BQ9UMR2 479 aa18.65■□□□□ 0.58
TRIM28-205ENST00000595028 PRDX5P30044 214 aa18.64■□□□□ 0.57
TRIM28-205ENST00000595028 OS9Q13438 667 aaPredicted RBP18.64■□□□□ 0.57
TRIM28-205ENST00000595028 NEUROD6Q96NK8 337 aa18.64■□□□□ 0.57
TRIM28-205ENST00000595028 COG6Q9Y2V7 657 aa18.64■□□□□ 0.57
TRIM28-205ENST00000595028 NOP58Q9Y2X3 529 aaKnown RBP18.64■□□□□ 0.57
TRIM28-205ENST00000595028 MYH2Q9UKX2 1941 aa18.64■□□□□ 0.57
TRIM28-205ENST00000595028 UBE2Q2LH0YL09 131 aa18.63■□□□□ 0.57
TRIM28-205ENST00000595028 SURF6O75683 361 aaKnown RBP18.63■□□□□ 0.57
TRIM28-205ENST00000595028 RASA3Q14644 834 aa18.63■□□□□ 0.57
TRIM28-205ENST00000595028 HABP4Q5JVS0 413 aaKnown RBP18.63■□□□□ 0.57
TRIM28-205ENST00000595028 HHIPL2Q6UWX4 724 aa18.63■□□□□ 0.57
TRIM28-205ENST00000595028 GPR108Q9NPR9 543 aa18.63■□□□□ 0.57
TRIM28-205ENST00000595028 LDHBP07195 334 aaKnown RBP18.62■□□□□ 0.57
TRIM28-205ENST00000595028 DIXDC1Q155Q3 683 aa18.62■□□□□ 0.57
TRIM28-205ENST00000595028 APOBEC3HQ6NTF7 200 aaKnown RBP18.62■□□□□ 0.57
TRIM28-205ENST00000595028 ARMC9Q7Z3E5 817 aa18.62■□□□□ 0.57
TRIM28-205ENST00000595028 ZGPATQ8N5A5 531 aaKnown RBP18.62■□□□□ 0.57
TRIM28-205ENST00000595028 MAST2Q6P0Q8 1798 aa18.61■□□□□ 0.57
TRIM28-205ENST00000595028 TCP10L2B9ZVM9 353 aa18.61■□□□□ 0.57
TRIM28-205ENST00000595028 PRKG1Q13976 671 aa18.61■□□□□ 0.57
TRIM28-205ENST00000595028 PKN2Q16513 984 aaKnown RBP18.61■□□□□ 0.57
TRIM28-205ENST00000595028 SUPT20HL1Q3ZLR7 823 aa18.61■□□□□ 0.57
TRIM28-205ENST00000595028 TNNI3KQ59H18 835 aa18.61■□□□□ 0.57
TRIM28-205ENST00000595028 GORABQ5T7V8 394 aa18.61■□□□□ 0.57
TRIM28-205ENST00000595028 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.61■□□□□ 0.57
TRIM28-205ENST00000595028 TMOD2Q9NZR1 351 aa18.61■□□□□ 0.57
TRIM28-205ENST00000595028 ANGEL1Q9UNK9 670 aaKnown RBP18.61■□□□□ 0.57
TRIM28-205ENST00000595028 DAGLAQ9Y4D2 1042 aa18.61■□□□□ 0.57
TRIM28-205ENST00000595028 FPGT-TNNI3KV9GXZ4 949 aa18.61■□□□□ 0.57
TRIM28-205ENST00000595028 LAMB1P07942 1786 aa18.6■□□□□ 0.57
TRIM28-205ENST00000595028 ARID4AP29374 1257 aaPredicted RBP18.6■□□□□ 0.57
TRIM28-205ENST00000595028 TNNI2P48788 182 aa18.6■□□□□ 0.57
TRIM28-205ENST00000595028 CACNB3P54284 484 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms