RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 LRRC24Q50LG9 513 aa14.82□□□□□ -0.04
CLIP3-204ENST00000590559 DZIP1LQ8IYY4 767 aaKnown RBP14.82□□□□□ -0.04
CLIP3-204ENST00000590559 ANKRD13AQ8IZ07 590 aa14.82□□□□□ -0.04
CLIP3-204ENST00000590559 PTPN18Q99952 460 aa14.82□□□□□ -0.04
CLIP3-204ENST00000590559 TDRD3Q9H7E2 651 aaKnown RBP14.82□□□□□ -0.04
CLIP3-204ENST00000590559 CRKP46108 304 aa14.81□□□□□ -0.04
CLIP3-204ENST00000590559 RBM5P52756 815 aaKnown RBP eCLIP14.81□□□□□ -0.04
CLIP3-204ENST00000590559 HDLBPQ00341 1268 aaKnown RBP14.81□□□□□ -0.04
CLIP3-204ENST00000590559 TNFAIP1Q13829 316 aa14.81□□□□□ -0.04
CLIP3-204ENST00000590559 CDAN1Q8IWY9 1227 aa14.81□□□□□ -0.04
CLIP3-204ENST00000590559 MS4A4AQ96JQ5 239 aa14.81□□□□□ -0.04
CLIP3-204ENST00000590559 PTPRCP08575 1304 aa14.81□□□□□ -0.04
CLIP3-204ENST00000590559 PDE8BO95263 885 aa14.8□□□□□ -0.04
CLIP3-204ENST00000590559 FGFR2P21802 821 aa14.8□□□□□ -0.04
CLIP3-204ENST00000590559 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.8□□□□□ -0.04
CLIP3-204ENST00000590559 MRIQ9BWK5 157 aa14.8□□□□□ -0.04
CLIP3-204ENST00000590559 USP44Q9H0E7 712 aa14.8□□□□□ -0.04
CLIP3-204ENST00000590559 KIF16BQ96L93 1317 aa14.8□□□□□ -0.04
CLIP3-204ENST00000590559 RFX5P48382 616 aaPredicted RBP14.79□□□□□ -0.04
CLIP3-204ENST00000590559 CAP1Q01518 475 aa14.79□□□□□ -0.04
CLIP3-204ENST00000590559 OTOP1Q7RTM1 612 aa14.79□□□□□ -0.04
CLIP3-204ENST00000590559 CRHR2Q13324 411 aa14.78□□□□□ -0.04
CLIP3-204ENST00000590559 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.78□□□□□ -0.04
CLIP3-204ENST00000590559 KLHDC4Q8TBB5 520 aa14.78□□□□□ -0.04
CLIP3-204ENST00000590559 TBC1D22AQ8WUA7 517 aa14.78□□□□□ -0.04
CLIP3-204ENST00000590559 SSH1Q8WYL5 1049 aa14.78□□□□□ -0.04
CLIP3-204ENST00000590559 OPTNQ96CV9 577 aa14.78□□□□□ -0.04
CLIP3-204ENST00000590559 TMEM39BQ9GZU3 492 aa14.78□□□□□ -0.04
CLIP3-204ENST00000590559 IQSEC3Q9UPP2 1182 aaPredicted RBP14.78□□□□□ -0.04
CLIP3-204ENST00000590559 TCP10L2B9ZVM9 353 aa14.77□□□□□ -0.05
CLIP3-204ENST00000590559 BCAMP50895 628 aa14.77□□□□□ -0.05
CLIP3-204ENST00000590559 SLFN5Q08AF3 891 aa14.77□□□□□ -0.05
CLIP3-204ENST00000590559 METTL24Q5JXM2 366 aa14.77□□□□□ -0.05
CLIP3-204ENST00000590559 ELP3Q9H9T3 547 aa14.77□□□□□ -0.05
CLIP3-204ENST00000590559 E9PSI1 815 aa14.76□□□□□ -0.05
CLIP3-204ENST00000590559 VGLL4Q14135 290 aa14.76□□□□□ -0.05
CLIP3-204ENST00000590559 CAVIN4Q5BKX8 364 aa14.76□□□□□ -0.05
CLIP3-204ENST00000590559 PRPF38BQ5VTL8 546 aaKnown RBP14.76□□□□□ -0.05
CLIP3-204ENST00000590559 FKBP1CQ5VVH2 108 aa14.76□□□□□ -0.05
CLIP3-204ENST00000590559 APOBEC3HQ6NTF7 200 aaKnown RBP14.76□□□□□ -0.05
CLIP3-204ENST00000590559 TRMT2AQ8IZ69 625 aaKnown RBP14.76□□□□□ -0.05
CLIP3-204ENST00000590559 CNKSR2Q8WXI2 1034 aa14.76□□□□□ -0.05
CLIP3-204ENST00000590559 ZDHHC15Q96MV8 337 aa14.76□□□□□ -0.05
CLIP3-204ENST00000590559 PTPN22Q9Y2R2 807 aa14.76□□□□□ -0.05
CLIP3-204ENST00000590559 SUGT1Q9Y2Z0 365 aa14.76□□□□□ -0.05
CLIP3-204ENST00000590559 TRIM17Q9Y577 477 aa14.76□□□□□ -0.05
CLIP3-204ENST00000590559 TNNI2P48788 182 aa14.75□□□□□ -0.05
CLIP3-204ENST00000590559 MAP3K9P80192 1104 aa14.75□□□□□ -0.05
CLIP3-204ENST00000590559 ALDH1L2Q3SY69 923 aa14.75□□□□□ -0.05
CLIP3-204ENST00000590559 OTUD7BQ6GQQ9 843 aa14.75□□□□□ -0.05
CLIP3-204ENST00000590559 HHIPL2Q6UWX4 724 aa14.75□□□□□ -0.05
CLIP3-204ENST00000590559 ATG9AQ7Z3C6 839 aa14.75□□□□□ -0.05
CLIP3-204ENST00000590559 FAM83AQ86UY5 434 aa14.75□□□□□ -0.05
CLIP3-204ENST00000590559 VPS37DQ86XT2 251 aa14.75□□□□□ -0.05
CLIP3-204ENST00000590559 BRI3BPQ8WY22 251 aa14.75□□□□□ -0.05
CLIP3-204ENST00000590559 TEKT1Q969V4 418 aa14.75□□□□□ -0.05
CLIP3-204ENST00000590559 ERO1AQ96HE7 468 aa14.75□□□□□ -0.05
CLIP3-204ENST00000590559 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.75□□□□□ -0.05
CLIP3-204ENST00000590559 RPAP1Q9BWH6 1393 aaPredicted RBP14.74□□□□□ -0.05
CLIP3-204ENST00000590559 ZSWIM8A7E2V4 1837 aa14.74□□□□□ -0.05
CLIP3-204ENST00000590559 SP3Q02447 781 aa14.74□□□□□ -0.05
CLIP3-204ENST00000590559 CHAF1AQ13111 956 aaPredicted RBP14.74□□□□□ -0.05
CLIP3-204ENST00000590559 PUM3Q15397 648 aaKnown RBP14.74□□□□□ -0.05
CLIP3-204ENST00000590559 CD99L2Q8TCZ2 262 aa14.74□□□□□ -0.05
CLIP3-204ENST00000590559 SPDYE5A6NIY4 337 aa14.73□□□□□ -0.05
CLIP3-204ENST00000590559 EYA2O00167 538 aa14.73□□□□□ -0.05
CLIP3-204ENST00000590559 ZBTB22O15209 634 aa14.73□□□□□ -0.05
CLIP3-204ENST00000590559 GTF2A2P52657 109 aa14.73□□□□□ -0.05
CLIP3-204ENST00000590559 CACNB3P54284 484 aa14.73□□□□□ -0.05
CLIP3-204ENST00000590559 INTS3Q68E01 1043 aaKnown RBP14.73□□□□□ -0.05
CLIP3-204ENST00000590559 ARMC5Q96C12 935 aa14.73□□□□□ -0.05
CLIP3-204ENST00000590559 SNCAIPQ9Y6H5 919 aa14.73□□□□□ -0.05
CLIP3-204ENST00000590559 KIAA0100Q14667 2235 aaKnown RBP14.73□□□□□ -0.05
CLIP3-204ENST00000590559 POTEFA5A3E0 1075 aa14.72□□□□□ -0.05
CLIP3-204ENST00000590559 IFIT1P09914 478 aaKnown RBP14.72□□□□□ -0.05
CLIP3-204ENST00000590559 FAM43AQ8N2R8 423 aa14.72□□□□□ -0.05
CLIP3-204ENST00000590559 LPIN2Q92539 896 aa14.72□□□□□ -0.05
CLIP3-204ENST00000590559 MAST3O60307 1309 aa14.71□□□□□ -0.05
CLIP3-204ENST00000590559 MYH2Q9UKX2 1941 aa14.71□□□□□ -0.05
CLIP3-204ENST00000590559 CCL15-CCL14A0A0B4J2E2 113 aa14.71□□□□□ -0.05
CLIP3-204ENST00000590559 FRAT2O75474 233 aaPredicted RBP14.71□□□□□ -0.05
CLIP3-204ENST00000590559 CCL15Q16663 113 aa14.71□□□□□ -0.05
CLIP3-204ENST00000590559 CDCA7LQ96GN5 454 aa14.71□□□□□ -0.05
CLIP3-204ENST00000590559 EFCC1Q9HA90 598 aa14.71□□□□□ -0.05
CLIP3-204ENST00000590559 ZCCHC17Q9NP64 241 aaKnown RBP14.71□□□□□ -0.05
CLIP3-204ENST00000590559 FBXO3Q9UK99 471 aa14.71□□□□□ -0.05
CLIP3-204ENST00000590559 CSADQ9Y600 493 aa14.71□□□□□ -0.05
CLIP3-204ENST00000590559 AK9Q5TCS8 1911 aa14.7□□□□□ -0.06
CLIP3-204ENST00000590559 ERO1BQ86YB8 467 aa14.7□□□□□ -0.06
CLIP3-204ENST00000590559 WDR66Q8TBY9 1149 aa14.7□□□□□ -0.06
CLIP3-204ENST00000590559 ZKSCAN4Q969J2 545 aaPredicted RBP14.7□□□□□ -0.06
CLIP3-204ENST00000590559 OTUD5Q96G74 571 aa14.7□□□□□ -0.06
CLIP3-204ENST00000590559 ZNF112Q9UJU3 913 aa14.7□□□□□ -0.06
CLIP3-204ENST00000590559 DOCK2Q92608 1830 aa14.69□□□□□ -0.06
CLIP3-204ENST00000590559 IRF6O14896 467 aa14.69□□□□□ -0.06
CLIP3-204ENST00000590559 CIAO1O76071 339 aa14.69□□□□□ -0.06
CLIP3-204ENST00000590559 SLC5A1P13866 664 aa14.69□□□□□ -0.06
CLIP3-204ENST00000590559 PPIL2Q13356 520 aa14.69□□□□□ -0.06
CLIP3-204ENST00000590559 TAF1CQ15572 869 aaPredicted RBP14.69□□□□□ -0.06
CLIP3-204ENST00000590559 WRNIP1Q96S55 665 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms