RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 MPRIPQ6WCQ1 1025 aa11.07□□□□□ -0.64
SMAD4-209ENST00000589941 AIDAQ96BJ3 306 aa11.07□□□□□ -0.64
SMAD4-209ENST00000589941 TJP1Q07157 1748 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 ANKRD31Q8N7Z5 1873 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 GLTPD2A6NH11 291 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 USP17L15C9J2P7 530 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 USP17L10C9JJH3 530 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 USP17L13C9JLJ4 530 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 USP17L12C9JPN9 530 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 USP17L11C9JVI0 530 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 USP17L21D6R901 530 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 USP17L18D6R9N7 530 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 USP17L22D6RA61 530 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 USP17L17D6RBQ6 530 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 USP17L19D6RCP7 530 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 USP17L20D6RJB6 530 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 CHRNA5P30532 468 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 PTSQ03393 145 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 USP17L24Q0WX57 530 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 SIX5Q8N196 739 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 ZNF775Q96BV0 537 aaPredicted RBP11.06□□□□□ -0.64
SMAD4-209ENST00000589941 SLC4A9Q96Q91 983 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 ZSCAN10Q96SZ4 725 aaPredicted RBP11.06□□□□□ -0.64
SMAD4-209ENST00000589941 USP3Q9Y6I4 520 aa11.06□□□□□ -0.64
SMAD4-209ENST00000589941 SFI1A8K8P3 1242 aa11.05□□□□□ -0.64
SMAD4-209ENST00000589941 SMTNP53814 917 aa11.05□□□□□ -0.64
SMAD4-209ENST00000589941 IP6K1Q92551 441 aa11.05□□□□□ -0.64
SMAD4-209ENST00000589941 CCDC87Q9NVE4 849 aa11.05□□□□□ -0.64
SMAD4-209ENST00000589941 SCN4AP35499 1836 aa11.05□□□□□ -0.64
SMAD4-209ENST00000589941 KDRP35968 1356 aa11.04□□□□□ -0.64
SMAD4-209ENST00000589941 FAM196BA6NMK8 535 aa11.04□□□□□ -0.64
SMAD4-209ENST00000589941 DALRD3Q5D0E6 543 aaKnown RBP11.04□□□□□ -0.64
SMAD4-209ENST00000589941 SPATA31C2B4DYI2 1134 aa11.03□□□□□ -0.64
SMAD4-209ENST00000589941 FBLN1P23142 703 aa11.03□□□□□ -0.64
SMAD4-209ENST00000589941 PIM2Q9P1W9 311 aa11.03□□□□□ -0.64
SMAD4-209ENST00000589941 EVC2Q86UK5 1308 aa11.03□□□□□ -0.64
SMAD4-209ENST00000589941 PASKQ96RG2 1323 aa11.03□□□□□ -0.64
SMAD4-209ENST00000589941 LOC102724428A0A0B4J2F2 783 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 SLC35F4A4IF30 521 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 A6NJY4 79 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 CYP27B1O15528 508 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 GYS1P13807 737 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 HOXC9P31274 260 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 EPHA4P54764 986 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 SIK1P57059 783 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 DDR1Q08345 913 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 DPYDQ12882 1025 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 MTFR1Q15390 333 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 NBPF6Q5VWK0 638 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 NBPF10Q6P3W6 841 aaKnown RBP11.02□□□□□ -0.65
SMAD4-209ENST00000589941 ANKMY2Q8IV38 441 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 NBPF15Q8N660 670 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 PIGBQ92521 554 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 NBPF4Q96M43 638 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 NXF1Q9UBU9 619 aaKnown RBP11.02□□□□□ -0.65
SMAD4-209ENST00000589941 IQSEC3Q9UPP2 1182 aaPredicted RBP11.02□□□□□ -0.65
SMAD4-209ENST00000589941 MAP3K19Q56UN5 1328 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 PCDH11XQ9BZA7 1347 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 PCDH11YQ9BZA8 1340 aa11.02□□□□□ -0.65
SMAD4-209ENST00000589941 EDC4Q6P2E9 1401 aaKnown RBP11.01□□□□□ -0.65
SMAD4-209ENST00000589941 ARFGEF2Q9Y6D5 1785 aa11.01□□□□□ -0.65
SMAD4-209ENST00000589941 BACH1O14867 736 aa11.01□□□□□ -0.65
SMAD4-209ENST00000589941 PHKA2P46019 1235 aa11.01□□□□□ -0.65
SMAD4-209ENST00000589941 C4orf17Q53FE4 359 aa11.01□□□□□ -0.65
SMAD4-209ENST00000589941 TMEM214Q6NUQ4 689 aaKnown RBP11.01□□□□□ -0.65
SMAD4-209ENST00000589941 TSEN2Q8NCE0 465 aaKnown RBP11.01□□□□□ -0.65
SMAD4-209ENST00000589941 ARID3AQ99856 593 aa11.01□□□□□ -0.65
SMAD4-209ENST00000589941 RAB3GAP2Q9H2M9 1393 aa11.01□□□□□ -0.65
SMAD4-209ENST00000589941 KIF20BQ96Q89 1820 aa11□□□□□ -0.65
SMAD4-209ENST00000589941 TRPM7Q96QT4 1865 aa11□□□□□ -0.65
SMAD4-209ENST00000589941 PPFIA3O75145 1194 aa11□□□□□ -0.65
SMAD4-209ENST00000589941 LGR5O75473 907 aa11□□□□□ -0.65
SMAD4-209ENST00000589941 LMNB1P20700 586 aa11□□□□□ -0.65
SMAD4-209ENST00000589941 TMF1P82094 1093 aa11□□□□□ -0.65
SMAD4-209ENST00000589941 TAS1R3Q7RTX0 852 aa11□□□□□ -0.65
SMAD4-209ENST00000589941 ZNF295-AS1Q8N0V1 137 aa11□□□□□ -0.65
SMAD4-209ENST00000589941 CCDC155Q8N6L0 562 aa11□□□□□ -0.65
SMAD4-209ENST00000589941 SMARCC1Q92922 1105 aaPredicted RBP11□□□□□ -0.65
SMAD4-209ENST00000589941 PBXIP1Q96AQ6 731 aa11□□□□□ -0.65
SMAD4-209ENST00000589941 A0A1W2PP64 1363 aa11□□□□□ -0.65
SMAD4-209ENST00000589941 ANKRD26Q9UPS8 1709 aa10.99□□□□□ -0.65
SMAD4-209ENST00000589941 NFKBIEO00221 500 aa10.99□□□□□ -0.65
SMAD4-209ENST00000589941 TERTO14746 1132 aaKnown RBP10.99□□□□□ -0.65
SMAD4-209ENST00000589941 SEC13P55735 322 aa10.99□□□□□ -0.65
SMAD4-209ENST00000589941 TBCELQ5QJ74 424 aa10.99□□□□□ -0.65
SMAD4-209ENST00000589941 RHBDD1Q8TEB9 315 aa10.99□□□□□ -0.65
SMAD4-209ENST00000589941 ASAP1Q9ULH1 1129 aa10.99□□□□□ -0.65
SMAD4-209ENST00000589941 ZMIZ1Q9ULJ6 1067 aa10.99□□□□□ -0.65
SMAD4-209ENST00000589941 PARP3Q9Y6F1 533 aa10.99□□□□□ -0.65
SMAD4-209ENST00000589941 M0R2N6 131 aa10.98□□□□□ -0.65
SMAD4-209ENST00000589941 CDK2AP1O14519 115 aa10.98□□□□□ -0.65
SMAD4-209ENST00000589941 FOXK2Q01167 660 aa10.98□□□□□ -0.65
SMAD4-209ENST00000589941 NLGN1Q8N2Q7 840 aa10.98□□□□□ -0.65
SMAD4-209ENST00000589941 SCHIP1Q9P0W5 487 aaPredicted RBP10.98□□□□□ -0.65
SMAD4-209ENST00000589941 SRP68Q9UHB9 627 aaKnown RBP10.98□□□□□ -0.65
SMAD4-209ENST00000589941 NOVA2Q9UNW9 492 aaKnown RBP10.98□□□□□ -0.65
SMAD4-209ENST00000589941 NFX1Q12986 1120 aaKnown RBP10.97□□□□□ -0.65
SMAD4-209ENST00000589941 GNASQ5JWF2 1037 aa10.97□□□□□ -0.65
SMAD4-209ENST00000589941 LCE2CQ5TA81 110 aa10.97□□□□□ -0.65
SMAD4-209ENST00000589941 MCOLN1Q9GZU1 580 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms