RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 TTLL5Q6EMB2 1281 aa12.65□□□□□ -0.38
VPS4B-204ENST00000589604 USP17L1Q7RTZ2 530 aa12.65□□□□□ -0.38
VPS4B-204ENST00000589604 VPS37DQ86XT2 251 aa12.65□□□□□ -0.38
VPS4B-204ENST00000589604 GPC2Q8N158 579 aa12.65□□□□□ -0.38
VPS4B-204ENST00000589604 C22orf23Q9BZE7 217 aa12.65□□□□□ -0.38
VPS4B-204ENST00000589604 FAM205AQ6ZU69 1335 aa12.65□□□□□ -0.38
VPS4B-204ENST00000589604 SGSM2O43147 1006 aa12.64□□□□□ -0.39
VPS4B-204ENST00000589604 CHAF1AQ13111 956 aaPredicted RBP12.64□□□□□ -0.39
VPS4B-204ENST00000589604 CCDC158Q5M9N0 1113 aa12.64□□□□□ -0.39
VPS4B-204ENST00000589604 TTC39AQ5SRH9 613 aa12.64□□□□□ -0.39
VPS4B-204ENST00000589604 STRIP1Q5VSL9 837 aa12.64□□□□□ -0.39
VPS4B-204ENST00000589604 RSBN1LQ6PCB5 846 aaPredicted RBP12.64□□□□□ -0.39
VPS4B-204ENST00000589604 CASC1Q6TDU7 716 aa12.64□□□□□ -0.39
VPS4B-204ENST00000589604 FBXW7Q969H0 707 aa12.64□□□□□ -0.39
VPS4B-204ENST00000589604 ANTXR1Q9H6X2 564 aa12.64□□□□□ -0.39
VPS4B-204ENST00000589604 NMRK2Q9NPI5 230 aa12.64□□□□□ -0.39
VPS4B-204ENST00000589604 SNRKQ9NRH2 765 aa12.64□□□□□ -0.39
VPS4B-204ENST00000589604 HMG20BQ9P0W2 317 aa12.64□□□□□ -0.39
VPS4B-204ENST00000589604 U3KPZ7 1027 aaPredicted RBP12.64□□□□□ -0.39
VPS4B-204ENST00000589604 ADAMTSL1Q8N6G6 1762 aa12.64□□□□□ -0.39
VPS4B-204ENST00000589604 CHGBP05060 677 aa12.64□□□□□ -0.39
VPS4B-204ENST00000589604 TNIP1Q15025 636 aa12.64□□□□□ -0.39
VPS4B-204ENST00000589604 GORABQ5T7V8 394 aa12.64□□□□□ -0.39
VPS4B-204ENST00000589604 KBTBD3Q8NAB2 608 aa12.64□□□□□ -0.39
VPS4B-204ENST00000589604 L3MBTL3Q96JM7 780 aaPredicted RBP12.64□□□□□ -0.39
VPS4B-204ENST00000589604 DNAJC2Q99543 621 aaKnown RBP12.64□□□□□ -0.39
VPS4B-204ENST00000589604 KIF2CQ99661 725 aa12.64□□□□□ -0.39
VPS4B-204ENST00000589604 PAG1Q9NWQ8 432 aa12.64□□□□□ -0.39
VPS4B-204ENST00000589604 RFX7Q2KHR2 1363 aa12.63□□□□□ -0.39
VPS4B-204ENST00000589604 GOLIM4O00461 696 aa12.63□□□□□ -0.39
VPS4B-204ENST00000589604 EGFRP00533 1210 aa12.63□□□□□ -0.39
VPS4B-204ENST00000589604 EPS15P42566 896 aa12.63□□□□□ -0.39
VPS4B-204ENST00000589604 ZAP70P43403 619 aa12.63□□□□□ -0.39
VPS4B-204ENST00000589604 DPY19L2Q6NUT2 758 aa12.63□□□□□ -0.39
VPS4B-204ENST00000589604 NMIQ13287 307 aaPredicted RBP12.62□□□□□ -0.39
VPS4B-204ENST00000589604 CWC27Q6UX04 472 aaKnown RBP12.62□□□□□ -0.39
VPS4B-204ENST00000589604 TICAM2Q86XR7 235 aa12.62□□□□□ -0.39
VPS4B-204ENST00000589604 ZNF784Q8NCA9 323 aaPredicted RBP12.62□□□□□ -0.39
VPS4B-204ENST00000589604 FAM227BQ96M60 508 aa12.62□□□□□ -0.39
VPS4B-204ENST00000589604 FSD1Q9BTV5 496 aa12.62□□□□□ -0.39
VPS4B-204ENST00000589604 UPF2Q9HAU5 1272 aaKnown RBP12.62□□□□□ -0.39
VPS4B-204ENST00000589604 RRAGCQ9HB90 399 aa12.62□□□□□ -0.39
VPS4B-204ENST00000589604 PCDHAC2Q9Y5I4 1007 aa12.62□□□□□ -0.39
VPS4B-204ENST00000589604 A0A0D9SFI3 127 aa12.61□□□□□ -0.39
VPS4B-204ENST00000589604 FRAT2O75474 233 aaPredicted RBP12.61□□□□□ -0.39
VPS4B-204ENST00000589604 CYP2E1P05181 493 aaPredicted RBP12.61□□□□□ -0.39
VPS4B-204ENST00000589604 UQCRFS1P1P0C7P4 283 aa12.61□□□□□ -0.39
VPS4B-204ENST00000589604 MFSD14BQ5SR56 506 aa12.61□□□□□ -0.39
VPS4B-204ENST00000589604 KIAA0825Q8IV33 1275 aa12.61□□□□□ -0.39
VPS4B-204ENST00000589604 SPATA5Q8NB90 893 aa12.61□□□□□ -0.39
VPS4B-204ENST00000589604 LSG1Q9H089 658 aaKnown RBP12.61□□□□□ -0.39
VPS4B-204ENST00000589604 GPRC5DQ9NZD1 345 aa12.61□□□□□ -0.39
VPS4B-204ENST00000589604 HIP1O00291 1037 aa12.61□□□□□ -0.39
VPS4B-204ENST00000589604 EIF5BO60841 1220 aaKnown RBP12.61□□□□□ -0.39
VPS4B-204ENST00000589604 REC8O95072 547 aa12.61□□□□□ -0.39
VPS4B-204ENST00000589604 PRDX5P30044 214 aa12.61□□□□□ -0.39
VPS4B-204ENST00000589604 SLFNL1Q499Z3 407 aa12.61□□□□□ -0.39
VPS4B-204ENST00000589604 ZNF384Q8TF68 577 aa12.61□□□□□ -0.39
VPS4B-204ENST00000589604 DPF2Q92785 391 aa12.61□□□□□ -0.39
VPS4B-204ENST00000589604 DIAPH3Q9NSV4 1193 aa12.61□□□□□ -0.39
VPS4B-204ENST00000589604 GNL3LQ9NVN8 582 aaKnown RBP12.61□□□□□ -0.39
VPS4B-204ENST00000589604 DENND2AQ9ULE3 1009 aa12.61□□□□□ -0.39
VPS4B-204ENST00000589604 PDS5AQ29RF7 1337 aaKnown RBP12.6□□□□□ -0.39
VPS4B-204ENST00000589604 SCN4AP35499 1836 aa12.6□□□□□ -0.39
VPS4B-204ENST00000589604 F8W031 263 aaPredicted RBP12.6□□□□□ -0.39
VPS4B-204ENST00000589604 SEMA3EO15041 775 aa12.6□□□□□ -0.39
VPS4B-204ENST00000589604 POTEIP0CG38 1075 aa12.6□□□□□ -0.39
VPS4B-204ENST00000589604 POTEJP0CG39 1038 aa12.6□□□□□ -0.39
VPS4B-204ENST00000589604 ANP32AP39687 249 aaKnown RBP12.6□□□□□ -0.39
VPS4B-204ENST00000589604 MICALL2Q8IY33 904 aa12.6□□□□□ -0.39
VPS4B-204ENST00000589604 AGBL3Q8NEM8 1001 aa12.6□□□□□ -0.39
VPS4B-204ENST00000589604 TRPM4Q8TD43 1214 aa12.6□□□□□ -0.39
VPS4B-204ENST00000589604 PIH1D3Q9NQM4 214 aaKnown RBP12.6□□□□□ -0.39
VPS4B-204ENST00000589604 CNOT7Q9UIV1 285 aaKnown RBP12.6□□□□□ -0.39
VPS4B-204ENST00000589604 EPB41L2O43491 1005 aaKnown RBP12.59□□□□□ -0.39
VPS4B-204ENST00000589604 RPS12P25398 132 aaKnown RBP12.59□□□□□ -0.39
VPS4B-204ENST00000589604 HIRAP54198 1017 aaPredicted RBP12.59□□□□□ -0.39
VPS4B-204ENST00000589604 ZNF280AP59817 542 aaPredicted RBP12.59□□□□□ -0.39
VPS4B-204ENST00000589604 FKBP1AP62942 108 aaKnown RBP12.59□□□□□ -0.39
VPS4B-204ENST00000589604 SAMD7Q7Z3H4 446 aa12.59□□□□□ -0.39
VPS4B-204ENST00000589604 TAF1DQ9H5J8 278 aaPredicted RBP12.59□□□□□ -0.39
VPS4B-204ENST00000589604 ASTN2O75129 1339 aaPredicted RBP12.58□□□□□ -0.39
VPS4B-204ENST00000589604 SALL1Q9NSC2 1324 aa12.58□□□□□ -0.39
VPS4B-204ENST00000589604 KIF3CO14782 793 aa12.58□□□□□ -0.4
VPS4B-204ENST00000589604 PTH1RQ03431 593 aa12.58□□□□□ -0.4
VPS4B-204ENST00000589604 ZMYM1Q5SVZ6 1142 aa12.58□□□□□ -0.4
VPS4B-204ENST00000589604 ZNF589Q86UQ0 364 aaPredicted RBP12.58□□□□□ -0.4
VPS4B-204ENST00000589604 RUFY2Q8WXA3 655 aa12.58□□□□□ -0.4
VPS4B-204ENST00000589604 IL17RAQ96F46 866 aa12.58□□□□□ -0.4
VPS4B-204ENST00000589604 SEC62Q99442 399 aaKnown RBP12.58□□□□□ -0.4
VPS4B-204ENST00000589604 RAD50Q92878 1312 aa12.58□□□□□ -0.4
VPS4B-204ENST00000589604 RNF113AO15541 343 aaKnown RBP12.57□□□□□ -0.4
VPS4B-204ENST00000589604 USP17L8P0C7I0 530 aa12.57□□□□□ -0.4
VPS4B-204ENST00000589604 EPHX2P34913 555 aa12.57□□□□□ -0.4
VPS4B-204ENST00000589604 TBC1D10BQ4KMP7 808 aaPredicted RBP12.57□□□□□ -0.4
VPS4B-204ENST00000589604 WDR66Q8TBY9 1149 aa12.57□□□□□ -0.4
VPS4B-204ENST00000589604 GPBP1L1Q9HC44 474 aaPredicted RBP12.57□□□□□ -0.4
VPS4B-204ENST00000589604 ANO2Q9NQ90 1003 aa12.57□□□□□ -0.4
VPS4B-204ENST00000589604 HACL1Q9UJ83 578 aa12.57□□□□□ -0.4
VPS4B-204ENST00000589604 TTF2Q9UNY4 1162 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms