RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 CAVIN4Q5BKX8 364 aa17.62■□□□□ 0.41
VMP1-209ENST00000588915 VPS37DQ86XT2 251 aa17.62■□□□□ 0.41
VMP1-209ENST00000588915 PTPN22Q9Y2R2 807 aa17.62■□□□□ 0.41
VMP1-209ENST00000588915 PDE8BO95263 885 aa17.61■□□□□ 0.41
VMP1-209ENST00000588915 MAP3K9P80192 1104 aa17.61■□□□□ 0.41
VMP1-209ENST00000588915 SP3Q02447 781 aa17.61■□□□□ 0.41
VMP1-209ENST00000588915 CRHR2Q13324 411 aa17.61■□□□□ 0.41
VMP1-209ENST00000588915 ARHGEF6Q15052 776 aa17.61■□□□□ 0.41
VMP1-209ENST00000588915 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.61■□□□□ 0.41
VMP1-209ENST00000588915 OPTNQ96CV9 577 aa17.61■□□□□ 0.41
VMP1-209ENST00000588915 MS4A4AQ96JQ5 239 aa17.61■□□□□ 0.41
VMP1-209ENST00000588915 PTPN18Q99952 460 aa17.61■□□□□ 0.41
VMP1-209ENST00000588915 BICC1Q9H694 974 aaKnown RBP17.61■□□□□ 0.41
VMP1-209ENST00000588915 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.61■□□□□ 0.41
VMP1-209ENST00000588915 SUGT1Q9Y2Z0 365 aa17.61■□□□□ 0.41
VMP1-209ENST00000588915 ZEB1P37275 1124 aaPredicted RBP17.6■□□□□ 0.41
VMP1-209ENST00000588915 GTF2A2P52657 109 aa17.6■□□□□ 0.41
VMP1-209ENST00000588915 FKBP1CQ5VVH2 108 aa17.6■□□□□ 0.41
VMP1-209ENST00000588915 ELP3Q9H9T3 547 aa17.6■□□□□ 0.41
VMP1-209ENST00000588915 EFCC1Q9HA90 598 aa17.6■□□□□ 0.41
VMP1-209ENST00000588915 PTPRCP08575 1304 aa17.6■□□□□ 0.41
VMP1-209ENST00000588915 ZNF521Q96K83 1311 aa17.59■□□□□ 0.41
VMP1-209ENST00000588915 KIF16BQ96L93 1317 aa17.59■□□□□ 0.41
VMP1-209ENST00000588915 ZNF316A6NFI3 1004 aaPredicted RBP17.59■□□□□ 0.41
VMP1-209ENST00000588915 TCP10L2B9ZVM9 353 aa17.59■□□□□ 0.41
VMP1-209ENST00000588915 METTL24Q5JXM2 366 aa17.59■□□□□ 0.41
VMP1-209ENST00000588915 FAM83AQ86UY5 434 aa17.59■□□□□ 0.41
VMP1-209ENST00000588915 TEKT1Q969V4 418 aa17.59■□□□□ 0.41
VMP1-209ENST00000588915 HOOK2Q96ED9 719 aa17.59■□□□□ 0.41
VMP1-209ENST00000588915 FRAT2O75474 233 aaPredicted RBP17.58■□□□□ 0.4
VMP1-209ENST00000588915 FAM9BQ8IZU0 186 aa17.58■□□□□ 0.4
VMP1-209ENST00000588915 MRPL50Q8N5N7 158 aaKnown RBP17.58■□□□□ 0.4
VMP1-209ENST00000588915 VGLL2Q8N8G2 317 aa17.58■□□□□ 0.4
VMP1-209ENST00000588915 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.58■□□□□ 0.4
VMP1-209ENST00000588915 CD99L2Q8TCZ2 262 aa17.58■□□□□ 0.4
VMP1-209ENST00000588915 ARMC5Q96C12 935 aa17.58■□□□□ 0.4
VMP1-209ENST00000588915 GCC1Q96CN9 775 aa17.58■□□□□ 0.4
VMP1-209ENST00000588915 TMEM39BQ9GZU3 492 aa17.58■□□□□ 0.4
VMP1-209ENST00000588915 ZFYVE28Q9HCC9 887 aa17.58■□□□□ 0.4
VMP1-209ENST00000588915 CSADQ9Y600 493 aa17.58■□□□□ 0.4
VMP1-209ENST00000588915 ARAP2Q8WZ64 1704 aa17.58■□□□□ 0.4
VMP1-209ENST00000588915 MAST3O60307 1309 aa17.57■□□□□ 0.4
VMP1-209ENST00000588915 WDHD1O75717 1129 aaPredicted RBP17.57■□□□□ 0.4
VMP1-209ENST00000588915 VGLL4Q14135 290 aa17.57■□□□□ 0.4
VMP1-209ENST00000588915 LRRC24Q50LG9 513 aa17.57■□□□□ 0.4
VMP1-209ENST00000588915 ANKRD44Q8N8A2 993 aa17.57■□□□□ 0.4
VMP1-209ENST00000588915 ZDHHC15Q96MV8 337 aa17.57■□□□□ 0.4
VMP1-209ENST00000588915 ZCCHC17Q9NP64 241 aaKnown RBP17.57■□□□□ 0.4
VMP1-209ENST00000588915 CCL15-CCL14A0A0B4J2E2 113 aa17.56■□□□□ 0.4
VMP1-209ENST00000588915 CCL15Q16663 113 aa17.56■□□□□ 0.4
VMP1-209ENST00000588915 HHIPL2Q6UWX4 724 aa17.56■□□□□ 0.4
VMP1-209ENST00000588915 BRI3BPQ8WY22 251 aa17.56■□□□□ 0.4
VMP1-209ENST00000588915 TMOD2Q9NZR1 351 aa17.56■□□□□ 0.4
VMP1-209ENST00000588915 SPDYE5A6NIY4 337 aa17.55■□□□□ 0.4
VMP1-209ENST00000588915 IFIT1P09914 478 aaKnown RBP17.55■□□□□ 0.4
VMP1-209ENST00000588915 CHAF1AQ13111 956 aaPredicted RBP17.55■□□□□ 0.4
VMP1-209ENST00000588915 TAF1CQ15572 869 aaPredicted RBP17.55■□□□□ 0.4
VMP1-209ENST00000588915 GRIK5Q16478 980 aa17.55■□□□□ 0.4
VMP1-209ENST00000588915 ERO1BQ86YB8 467 aa17.55■□□□□ 0.4
VMP1-209ENST00000588915 CDAN1Q8IWY9 1227 aa17.55■□□□□ 0.4
VMP1-209ENST00000588915 USP44Q9H0E7 712 aa17.55■□□□□ 0.4
VMP1-209ENST00000588915 IQSEC3Q9UPP2 1182 aaPredicted RBP17.55■□□□□ 0.4
VMP1-209ENST00000588915 OTOFQ9HC10 1997 aa17.54■□□□□ 0.4
VMP1-209ENST00000588915 POTEFA5A3E0 1075 aa17.54■□□□□ 0.4
VMP1-209ENST00000588915 E9PSI1 815 aa17.54■□□□□ 0.4
VMP1-209ENST00000588915 CETPP11597 493 aa17.54■□□□□ 0.4
VMP1-209ENST00000588915 FGFR2P21802 821 aa17.54■□□□□ 0.4
VMP1-209ENST00000588915 BCAMP50895 628 aa17.54■□□□□ 0.4
VMP1-209ENST00000588915 PUM3Q15397 648 aaKnown RBP17.54■□□□□ 0.4
VMP1-209ENST00000588915 APOBEC3HQ6NTF7 200 aaKnown RBP17.54■□□□□ 0.4
VMP1-209ENST00000588915 NBPF11Q86T75 865 aa17.54■□□□□ 0.4
VMP1-209ENST00000588915 WDR66Q8TBY9 1149 aa17.54■□□□□ 0.4
VMP1-209ENST00000588915 HTTP42858 3142 aa17.54■□□□□ 0.4
VMP1-209ENST00000588915 DCAF15Q66K64 600 aa17.53■□□□□ 0.4
VMP1-209ENST00000588915 CNKSR2Q8WXI2 1034 aa17.53■□□□□ 0.4
VMP1-209ENST00000588915 LPIN2Q92539 896 aa17.53■□□□□ 0.4
VMP1-209ENST00000588915 TMEM106CQ9BVX2 250 aa17.53■□□□□ 0.4
VMP1-209ENST00000588915 FBXO3Q9UK99 471 aa17.53■□□□□ 0.4
VMP1-209ENST00000588915 RPAP1Q9BWH6 1393 aaPredicted RBP17.53■□□□□ 0.4
VMP1-209ENST00000588915 KIAA0100Q14667 2235 aaKnown RBP17.52■□□□□ 0.4
VMP1-209ENST00000588915 EYA2O00167 538 aa17.52■□□□□ 0.4
VMP1-209ENST00000588915 GNRH1P01148 92 aa17.52■□□□□ 0.4
VMP1-209ENST00000588915 FAM43AQ8N2R8 423 aa17.52■□□□□ 0.4
VMP1-209ENST00000588915 SSH1Q8WYL5 1049 aa17.52■□□□□ 0.4
VMP1-209ENST00000588915 OTUD5Q96G74 571 aa17.52■□□□□ 0.4
VMP1-209ENST00000588915 SNCAIPQ9Y6H5 919 aa17.52■□□□□ 0.4
VMP1-209ENST00000588915 RBBP6Q7Z6E9 1792 aaKnown RBP17.51■□□□□ 0.39
VMP1-209ENST00000588915 TLR2O60603 784 aa17.51■□□□□ 0.39
VMP1-209ENST00000588915 PPIL2Q13356 520 aa17.51■□□□□ 0.39
VMP1-209ENST00000588915 SNAPC2Q13487 334 aa17.51■□□□□ 0.39
VMP1-209ENST00000588915 ALDH1L2Q3SY69 923 aa17.51■□□□□ 0.39
VMP1-209ENST00000588915 ZNF333Q96JL9 665 aa17.51■□□□□ 0.39
VMP1-209ENST00000588915 WRNIP1Q96S55 665 aa17.51■□□□□ 0.39
VMP1-209ENST00000588915 ZBTB22O15209 634 aa17.5■□□□□ 0.39
VMP1-209ENST00000588915 SLC5A1P13866 664 aa17.5■□□□□ 0.39
VMP1-209ENST00000588915 RFX5P48382 616 aaPredicted RBP17.5■□□□□ 0.39
VMP1-209ENST00000588915 CACNB3P54284 484 aa17.5■□□□□ 0.39
VMP1-209ENST00000588915 CAP1Q01518 475 aa17.5■□□□□ 0.39
VMP1-209ENST00000588915 PPATQ06203 517 aa17.5■□□□□ 0.39
VMP1-209ENST00000588915 KIF22Q14807 665 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms