RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 C9orf78Q9NZ63 289 aaPredicted RBP6.66□□□□□ -1.34
LIG3-210ENST00000588109 NUP188Q5SRE5 1749 aa6.66□□□□□ -1.34
LIG3-210ENST00000588109 ATP10DQ9P241 1426 aa6.66□□□□□ -1.34
LIG3-210ENST00000588109 N4BP2Q86UW6 1770 aaPredicted RBP6.65□□□□□ -1.34
LIG3-210ENST00000588109 AFDNP55196 1824 aaKnown RBP6.65□□□□□ -1.34
LIG3-210ENST00000588109 UBR3Q6ZT12 1888 aa6.65□□□□□ -1.34
LIG3-210ENST00000588109 ALDH1L1O75891 902 aa6.65□□□□□ -1.34
LIG3-210ENST00000588109 CAMTA2O94983 1202 aa6.65□□□□□ -1.34
LIG3-210ENST00000588109 SMPD1P17405 629 aa6.65□□□□□ -1.34
LIG3-210ENST00000588109 GPTP24298 496 aa6.65□□□□□ -1.34
LIG3-210ENST00000588109 TCIRG1Q13488 830 aa6.65□□□□□ -1.34
LIG3-210ENST00000588109 HLFQ16534 295 aa6.65□□□□□ -1.34
LIG3-210ENST00000588109 CWF19L2Q2TBE0 894 aaKnown RBP6.65□□□□□ -1.34
LIG3-210ENST00000588109 USPL1Q5W0Q7 1092 aa6.65□□□□□ -1.34
LIG3-210ENST00000588109 TRAF7Q6Q0C0 670 aa6.65□□□□□ -1.34
LIG3-210ENST00000588109 FLAD1Q8NFF5 587 aa6.65□□□□□ -1.34
LIG3-210ENST00000588109 CDK15Q96Q40 435 aa6.65□□□□□ -1.34
LIG3-210ENST00000588109 CWC25Q9NXE8 425 aaPredicted RBP6.65□□□□□ -1.34
LIG3-210ENST00000588109 NARFQ9UHQ1 456 aa6.65□□□□□ -1.34
LIG3-210ENST00000588109 PCDHB9Q9Y5E1 797 aa6.65□□□□□ -1.34
LIG3-210ENST00000588109 TLL2Q9Y6L7 1015 aa6.65□□□□□ -1.34
LIG3-210ENST00000588109 SCN7AQ01118 1682 aa6.65□□□□□ -1.35
LIG3-210ENST00000588109 BCORQ6W2J9 1755 aa6.64□□□□□ -1.35
LIG3-210ENST00000588109 NEURL1BA8MQ27 555 aa6.64□□□□□ -1.35
LIG3-210ENST00000588109 GRM8O00222 908 aa6.64□□□□□ -1.35
LIG3-210ENST00000588109 ZBTB7BO15156 539 aaPredicted RBP6.64□□□□□ -1.35
LIG3-210ENST00000588109 ADH1CP00326 375 aa6.64□□□□□ -1.35
LIG3-210ENST00000588109 IGKV5-2P06315 115 aa6.64□□□□□ -1.35
LIG3-210ENST00000588109 GNAI3P08754 354 aa6.64□□□□□ -1.35
LIG3-210ENST00000588109 UBTFL1P0CB47 393 aaPredicted RBP6.64□□□□□ -1.35
LIG3-210ENST00000588109 MCCD1P59942 119 aaPredicted RBP6.64□□□□□ -1.35
LIG3-210ENST00000588109 NR1H3Q13133 447 aa6.64□□□□□ -1.35
LIG3-210ENST00000588109 NR5A1Q13285 461 aa6.64□□□□□ -1.35
LIG3-210ENST00000588109 AAMPQ13685 434 aa6.64□□□□□ -1.35
LIG3-210ENST00000588109 SLC15A2Q16348 729 aa6.64□□□□□ -1.35
LIG3-210ENST00000588109 ERICH6BQ5W0A0 696 aa6.64□□□□□ -1.35
LIG3-210ENST00000588109 BICDL1Q6ZP65 573 aa6.64□□□□□ -1.35
LIG3-210ENST00000588109 ILDR2Q71H61 639 aa6.64□□□□□ -1.35
LIG3-210ENST00000588109 AMIGO3Q86WK7 504 aa6.64□□□□□ -1.35
LIG3-210ENST00000588109 TRMT44Q8IYL2 757 aaKnown RBP6.64□□□□□ -1.35
LIG3-210ENST00000588109 MEIS3Q99687 375 aa6.64□□□□□ -1.35
LIG3-210ENST00000588109 C1QTNF2Q9BXJ5 285 aa6.64□□□□□ -1.35
LIG3-210ENST00000588109 SRP68Q9UHB9 627 aaKnown RBP6.64□□□□□ -1.35
LIG3-210ENST00000588109 NIP7Q9Y221 180 aaKnown RBP eCLIP6.64□□□□□ -1.35
LIG3-210ENST00000588109 USP42Q9H9J4 1324 aaKnown RBP6.64□□□□□ -1.35
LIG3-210ENST00000588109 C4AP0C0L4 1744 aa6.64□□□□□ -1.35
LIG3-210ENST00000588109 ANKRD36CQ5JPF3 1778 aa6.64□□□□□ -1.35
LIG3-210ENST00000588109 FAM177BA6PVY3 158 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 AXIN1O15169 862 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 NPHP1O15259 732 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 GNAI2P04899 355 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 FBXO45P0C2W1 286 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 NUP98P52948 1817 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 GCKRQ14397 625 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 WASHC4Q2M389 1173 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 NBPF20Q3BBV1 942 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 CLEC4GQ6UXB4 293 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 PNPLA7Q6ZV29 1317 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 UBE3BQ7Z3V4 1068 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 NLRP10Q86W26 655 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 COL23A1Q86Y22 540 aaPredicted RBP6.63□□□□□ -1.35
LIG3-210ENST00000588109 CCDC191Q8NCU4 936 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 SETDB2Q96T68 719 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 ISCA1Q9BUE6 129 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 C1orf115Q9H7X2 142 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 HDAC5Q9UQL6 1122 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 MAP4K5Q9Y4K4 846 aa6.63□□□□□ -1.35
LIG3-210ENST00000588109 TUBGCP6Q96RT7 1819 aa6.62□□□□□ -1.35
LIG3-210ENST00000588109 NBPF7P0C2Y1 421 aaPredicted RBP6.62□□□□□ -1.35
LIG3-210ENST00000588109 GTF2E1P29083 439 aaPredicted RBP6.62□□□□□ -1.35
LIG3-210ENST00000588109 TRIM28Q13263 835 aaKnown RBP6.62□□□□□ -1.35
LIG3-210ENST00000588109 NNTQ13423 1086 aa6.62□□□□□ -1.35
LIG3-210ENST00000588109 CTC1Q2NKJ3 1217 aa6.62□□□□□ -1.35
LIG3-210ENST00000588109 PARP10Q53GL7 1025 aa6.62□□□□□ -1.35
LIG3-210ENST00000588109 TBC1D9BQ66K14 1250 aa6.62□□□□□ -1.35
LIG3-210ENST00000588109 PPP1R42Q7Z4L9 355 aa6.62□□□□□ -1.35
LIG3-210ENST00000588109 ZNF34Q8IZ26 560 aa6.62□□□□□ -1.35
LIG3-210ENST00000588109 JARID2Q92833 1246 aaPredicted RBP6.62□□□□□ -1.35
LIG3-210ENST00000588109 HPS1Q92902 700 aa6.62□□□□□ -1.35
LIG3-210ENST00000588109 CCDC136Q96JN2 1154 aa6.62□□□□□ -1.35
LIG3-210ENST00000588109 KCTD15Q96SI1 283 aaPredicted RBP6.62□□□□□ -1.35
LIG3-210ENST00000588109 UTP14AQ9BVJ6 771 aaKnown RBP6.62□□□□□ -1.35
LIG3-210ENST00000588109 USP44Q9H0E7 712 aa6.62□□□□□ -1.35
LIG3-210ENST00000588109 ZBTB40Q9NUA8 1239 aa6.62□□□□□ -1.35
LIG3-210ENST00000588109 PPP4R2Q9NY27 417 aa6.62□□□□□ -1.35
LIG3-210ENST00000588109 TRMT112Q9UI30 125 aaKnown RBP6.62□□□□□ -1.35
LIG3-210ENST00000588109 LRRFIP2Q9Y608 721 aaKnown RBP6.62□□□□□ -1.35
LIG3-210ENST00000588109 IBTKQ9P2D0 1353 aaPredicted RBP6.61□□□□□ -1.35
LIG3-210ENST00000588109 UBN2Q6ZU65 1347 aa6.61□□□□□ -1.35
LIG3-210ENST00000588109 GYS1P13807 737 aa6.61□□□□□ -1.35
LIG3-210ENST00000588109 FSHRP23945 695 aa6.61□□□□□ -1.35
LIG3-210ENST00000588109 GRM5P41594 1212 aa6.61□□□□□ -1.35
LIG3-210ENST00000588109 SUSD4Q5VX71 490 aa6.61□□□□□ -1.35
LIG3-210ENST00000588109 B4GALNT3Q6L9W6 998 aa6.61□□□□□ -1.35
LIG3-210ENST00000588109 NBPF5PQ86XG9 351 aaPredicted RBP6.61□□□□□ -1.35
LIG3-210ENST00000588109 NLGN1Q8N2Q7 840 aa6.61□□□□□ -1.35
LIG3-210ENST00000588109 ZBTB38Q8NAP3 1195 aaPredicted RBP6.61□□□□□ -1.35
LIG3-210ENST00000588109 FAM89AQ96GI7 184 aa6.61□□□□□ -1.35
LIG3-210ENST00000588109 NYXQ9GZU5 481 aa6.61□□□□□ -1.35
LIG3-210ENST00000588109 QSER1Q2KHR3 1735 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms