RNA–Protein interactions for RNA: ENST00000586253.1

SMAD4-204, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 784 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-204ENST00000586253 CIAO1O76071 339 aa9.97□□□□□ -0.81
SMAD4-204ENST00000586253 UFL1O94874 794 aa9.97□□□□□ -0.81
SMAD4-204ENST00000586253 WASHC4Q2M389 1173 aa9.97□□□□□ -0.81
SMAD4-204ENST00000586253 ZBTB40Q9NUA8 1239 aa9.97□□□□□ -0.81
SMAD4-204ENST00000586253 MED23Q9ULK4 1368 aa9.97□□□□□ -0.81
SMAD4-204ENST00000586253 COL4A5P29400 1685 aa9.96□□□□□ -0.81
SMAD4-204ENST00000586253 ATP8B2P98198 1209 aa9.96□□□□□ -0.82
SMAD4-204ENST00000586253 AOC3Q16853 763 aa9.96□□□□□ -0.82
SMAD4-204ENST00000586253 C15orf52Q6ZUT6 534 aaKnown RBP9.96□□□□□ -0.82
SMAD4-204ENST00000586253 NIM1KQ8IY84 436 aa9.96□□□□□ -0.82
SMAD4-204ENST00000586253 KLHDC4Q8TBB5 520 aa9.96□□□□□ -0.82
SMAD4-204ENST00000586253 SSH3Q8TE77 659 aa9.96□□□□□ -0.82
SMAD4-204ENST00000586253 PUS3Q9BZE2 481 aaKnown RBP9.96□□□□□ -0.82
SMAD4-204ENST00000586253 ZC3H12CQ9C0D7 883 aaKnown RBP9.96□□□□□ -0.82
SMAD4-204ENST00000586253 ZNF804BA4D1E1 1349 aa9.96□□□□□ -0.82
SMAD4-204ENST00000586253 PNMA6EA0A0J9YXQ4 647 aa9.95□□□□□ -0.82
SMAD4-204ENST00000586253 IL15P40933 162 aaPredicted RBP9.95□□□□□ -0.82
SMAD4-204ENST00000586253 KCNJ4P48050 445 aa9.95□□□□□ -0.82
SMAD4-204ENST00000586253 UBE4AQ14139 1066 aa9.95□□□□□ -0.82
SMAD4-204ENST00000586253 LRRC24Q50LG9 513 aa9.95□□□□□ -0.82
SMAD4-204ENST00000586253 METTL24Q5JXM2 366 aa9.95□□□□□ -0.82
SMAD4-204ENST00000586253 CEP85Q6P2H3 762 aa9.95□□□□□ -0.82
SMAD4-204ENST00000586253 RPAP2Q8IXW5 612 aaPredicted RBP9.95□□□□□ -0.82
SMAD4-204ENST00000586253 VGLL2Q8N8G2 317 aa9.95□□□□□ -0.82
SMAD4-204ENST00000586253 C1orf115Q9H7X2 142 aa9.95□□□□□ -0.82
SMAD4-204ENST00000586253 TSR3Q9UJK0 312 aaKnown RBP9.95□□□□□ -0.82
SMAD4-204ENST00000586253 ZNRF3Q9ULT6 936 aa9.95□□□□□ -0.82
SMAD4-204ENST00000586253 KDM2BQ8NHM5 1336 aa9.95□□□□□ -0.82
SMAD4-204ENST00000586253 IRS2Q9Y4H2 1338 aa9.94□□□□□ -0.82
SMAD4-204ENST00000586253 GLTPD2A6NH11 291 aa9.94□□□□□ -0.82
SMAD4-204ENST00000586253 SPDYE16A6NNV3 312 aaPredicted RBP9.94□□□□□ -0.82
SMAD4-204ENST00000586253 TAF5LO75529 589 aa9.94□□□□□ -0.82
SMAD4-204ENST00000586253 PDE8BO95263 885 aa9.94□□□□□ -0.82
SMAD4-204ENST00000586253 EIF6P56537 245 aaKnown RBP9.94□□□□□ -0.82
SMAD4-204ENST00000586253 AAMPQ13685 434 aa9.94□□□□□ -0.82
SMAD4-204ENST00000586253 ERICH6Q7L0X2 663 aa9.94□□□□□ -0.82
SMAD4-204ENST00000586253 ATG9AQ7Z3C6 839 aa9.94□□□□□ -0.82
SMAD4-204ENST00000586253 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.94□□□□□ -0.82
SMAD4-204ENST00000586253 ZNF541Q9H0D2 1346 aa9.93□□□□□ -0.82
SMAD4-204ENST00000586253 TESPA1A2RU30 521 aaPredicted RBP9.93□□□□□ -0.82
SMAD4-204ENST00000586253 HMMRO75330 724 aa9.93□□□□□ -0.82
SMAD4-204ENST00000586253 KCNC4Q03721 635 aa9.93□□□□□ -0.82
SMAD4-204ENST00000586253 PUM3Q15397 648 aaKnown RBP9.93□□□□□ -0.82
SMAD4-204ENST00000586253 PODNQ7Z5L7 613 aa9.93□□□□□ -0.82
SMAD4-204ENST00000586253 GPC2Q8N158 579 aa9.93□□□□□ -0.82
SMAD4-204ENST00000586253 ZNF784Q8NCA9 323 aaPredicted RBP9.93□□□□□ -0.82
SMAD4-204ENST00000586253 HELBQ8NG08 1087 aaPredicted RBP9.93□□□□□ -0.82
SMAD4-204ENST00000586253 GPR101Q96P66 508 aaPredicted RBP9.93□□□□□ -0.82
SMAD4-204ENST00000586253 COA1Q9GZY4 146 aa9.93□□□□□ -0.82
SMAD4-204ENST00000586253 SIL1Q9H173 461 aa9.93□□□□□ -0.82
SMAD4-204ENST00000586253 CEP126Q9P2H0 1117 aa9.93□□□□□ -0.82
SMAD4-204ENST00000586253 HPS5Q9UPZ3 1129 aa9.93□□□□□ -0.82
SMAD4-204ENST00000586253 PA2G4Q9UQ80 394 aaKnown RBP9.93□□□□□ -0.82
SMAD4-204ENST00000586253 NOP58Q9Y2X3 529 aaKnown RBP9.93□□□□□ -0.82
SMAD4-204ENST00000586253 PSME4Q14997 1843 aa9.93□□□□□ -0.82
SMAD4-204ENST00000586253 WDR90Q96KV7 1748 aa9.93□□□□□ -0.82
SMAD4-204ENST00000586253 WTIPA6NIX2 430 aaPredicted RBP9.92□□□□□ -0.82
SMAD4-204ENST00000586253 YDJCA8MPS7 323 aa9.92□□□□□ -0.82
SMAD4-204ENST00000586253 SEMA3EO15041 775 aa9.92□□□□□ -0.82
SMAD4-204ENST00000586253 MAP3K7O43318 606 aa9.92□□□□□ -0.82
SMAD4-204ENST00000586253 ECE2O60344 883 aa9.92□□□□□ -0.82
SMAD4-204ENST00000586253 G3BP1Q13283 466 aaKnown RBP eCLIP9.92□□□□□ -0.82
SMAD4-204ENST00000586253 TNIP1Q15025 636 aa9.92□□□□□ -0.82
SMAD4-204ENST00000586253 ZC3H15Q8WU90 426 aaKnown RBP9.92□□□□□ -0.82
SMAD4-204ENST00000586253 LPIN2Q92539 896 aa9.92□□□□□ -0.82
SMAD4-204ENST00000586253 LRCH3Q96II8 777 aa9.92□□□□□ -0.82
SMAD4-204ENST00000586253 DBNDD1Q9H9R9 158 aa9.92□□□□□ -0.82
SMAD4-204ENST00000586253 SUPT16HQ9Y5B9 1047 aaKnown RBP9.92□□□□□ -0.82
SMAD4-204ENST00000586253 SCN9AQ15858 1988 aa9.92□□□□□ -0.82
SMAD4-204ENST00000586253 ZNF609O15014 1411 aa9.91□□□□□ -0.82
SMAD4-204ENST00000586253 SCN4AP35499 1836 aa9.91□□□□□ -0.82
SMAD4-204ENST00000586253 SNAP23O00161 211 aa9.91□□□□□ -0.82
SMAD4-204ENST00000586253 IFIT1P09914 478 aaKnown RBP9.91□□□□□ -0.82
SMAD4-204ENST00000586253 SLC5A1P13866 664 aa9.91□□□□□ -0.82
SMAD4-204ENST00000586253 FGFR2P21802 821 aa9.91□□□□□ -0.82
SMAD4-204ENST00000586253 KLRK1P26718 216 aa9.91□□□□□ -0.82
SMAD4-204ENST00000586253 CXCL9Q07325 125 aa9.91□□□□□ -0.82
SMAD4-204ENST00000586253 HSP90AB4PQ58FF6 505 aa9.91□□□□□ -0.82
SMAD4-204ENST00000586253 CIAPIN1Q6FI81 312 aa9.91□□□□□ -0.82
SMAD4-204ENST00000586253 ZNF804AQ7Z570 1209 aa9.91□□□□□ -0.82
SMAD4-204ENST00000586253 TXNRD3Q86VQ6 643 aa9.91□□□□□ -0.82
SMAD4-204ENST00000586253 CRBNQ96SW2 442 aa9.91□□□□□ -0.82
SMAD4-204ENST00000586253 GPBP1L1Q9HC44 474 aaPredicted RBP9.91□□□□□ -0.82
SMAD4-204ENST00000586253 AKAP2Q9Y2D5 859 aa9.91□□□□□ -0.82
SMAD4-204ENST00000586253 ARAP2Q8WZ64 1704 aa9.9□□□□□ -0.82
SMAD4-204ENST00000586253 IQCA1LA6NCM1 817 aa9.9□□□□□ -0.82
SMAD4-204ENST00000586253 SURF6O75683 361 aaKnown RBP9.9□□□□□ -0.82
SMAD4-204ENST00000586253 DDNO94850 711 aaPredicted RBP9.9□□□□□ -0.82
SMAD4-204ENST00000586253 IL1R1P14778 569 aa9.9□□□□□ -0.82
SMAD4-204ENST00000586253 RPS12P25398 132 aaKnown RBP9.9□□□□□ -0.82
SMAD4-204ENST00000586253 PRSS12P56730 875 aa9.9□□□□□ -0.82
SMAD4-204ENST00000586253 ATP2B3Q16720 1220 aa9.9□□□□□ -0.82
SMAD4-204ENST00000586253 CAVIN4Q5BKX8 364 aa9.9□□□□□ -0.82
SMAD4-204ENST00000586253 PACS2Q86VP3 889 aa9.9□□□□□ -0.82
SMAD4-204ENST00000586253 ERC1Q8IUD2 1116 aa9.9□□□□□ -0.82
SMAD4-204ENST00000586253 SIRT2Q8IXJ6 389 aa9.9□□□□□ -0.82
SMAD4-204ENST00000586253 CD209Q9NNX6 404 aa9.9□□□□□ -0.82
SMAD4-204ENST00000586253 USP17L3A6NCW0 530 aa9.89□□□□□ -0.83
SMAD4-204ENST00000586253 USP17L4A6NCW7 530 aa9.89□□□□□ -0.83
SMAD4-204ENST00000586253 SMAPO00193 183 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms