RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ZNF296Q8WUU4 475 aaPredicted RBP25.6■■□□□ 1.69
SHMT1-209ENST00000582653 MRIQ9BWK5 157 aa25.6■■□□□ 1.69
SHMT1-209ENST00000582653 ECM29Q5VYK3 1845 aa25.6■■□□□ 1.69
SHMT1-209ENST00000582653 MANSC4A6NHS7 340 aaPredicted RBP25.59■■□□□ 1.69
SHMT1-209ENST00000582653 GPR25O00155 361 aa25.59■■□□□ 1.69
SHMT1-209ENST00000582653 EYA2O00167 538 aa25.59■■□□□ 1.69
SHMT1-209ENST00000582653 FGFR2P21802 821 aa25.59■■□□□ 1.69
SHMT1-209ENST00000582653 CRKP46108 304 aa25.59■■□□□ 1.69
SHMT1-209ENST00000582653 CHAF1AQ13111 956 aaPredicted RBP25.59■■□□□ 1.69
SHMT1-209ENST00000582653 SSC5DA1L4H1 1573 aa25.58■■□□□ 1.69
SHMT1-209ENST00000582653 ALDH1A1P00352 501 aa25.58■■□□□ 1.69
SHMT1-209ENST00000582653 IREB2P48200 963 aaKnown RBP25.58■■□□□ 1.69
SHMT1-209ENST00000582653 PKN2Q16513 984 aaKnown RBP25.58■■□□□ 1.69
SHMT1-209ENST00000582653 CLMNQ96JQ2 1002 aa25.58■■□□□ 1.69
SHMT1-209ENST00000582653 LRRFIP2Q9Y608 721 aaKnown RBP25.58■■□□□ 1.69
SHMT1-209ENST00000582653 KIF16BQ96L93 1317 aa25.58■■□□□ 1.69
SHMT1-209ENST00000582653 IFIT1P09914 478 aaKnown RBP25.57■■□□□ 1.68
SHMT1-209ENST00000582653 PUM3Q15397 648 aaKnown RBP25.57■■□□□ 1.68
SHMT1-209ENST00000582653 ATG9AQ7Z3C6 839 aa25.57■■□□□ 1.68
SHMT1-209ENST00000582653 ANKRD13AQ8IZ07 590 aa25.57■■□□□ 1.68
SHMT1-209ENST00000582653 WNK4Q96J92 1243 aa25.57■■□□□ 1.68
SHMT1-209ENST00000582653 MEIS3Q99687 375 aa25.57■■□□□ 1.68
SHMT1-209ENST00000582653 SIL1Q9H173 461 aa25.57■■□□□ 1.68
SHMT1-209ENST00000582653 TNNI2P48788 182 aa25.55■■□□□ 1.68
SHMT1-209ENST00000582653 DIEXFQ68CQ4 756 aaKnown RBP25.55■■□□□ 1.68
SHMT1-209ENST00000582653 IFNL1Q8IU54 200 aa25.55■■□□□ 1.68
SHMT1-209ENST00000582653 ARHGAP45Q92619 1136 aa25.55■■□□□ 1.68
SHMT1-209ENST00000582653 TEPSINQ96N21 525 aa25.55■■□□□ 1.68
SHMT1-209ENST00000582653 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.55■■□□□ 1.68
SHMT1-209ENST00000582653 FBXO3Q9UK99 471 aa25.55■■□□□ 1.68
SHMT1-209ENST00000582653 SUGT1Q9Y2Z0 365 aa25.55■■□□□ 1.68
SHMT1-209ENST00000582653 BCAR3O75815 825 aa25.54■■□□□ 1.68
SHMT1-209ENST00000582653 LPIN2Q92539 896 aa25.54■■□□□ 1.68
SHMT1-209ENST00000582653 TEKT1Q969V4 418 aa25.54■■□□□ 1.68
SHMT1-209ENST00000582653 R3HDMLQ9H3Y0 253 aa25.54■■□□□ 1.68
SHMT1-209ENST00000582653 HDAC5Q9UQL6 1122 aa25.54■■□□□ 1.68
SHMT1-209ENST00000582653 TNNQ9UQP3 1299 aa25.54■■□□□ 1.68
SHMT1-209ENST00000582653 TCP10L2B9ZVM9 353 aa25.53■■□□□ 1.68
SHMT1-209ENST00000582653 FKTNO75072 461 aa25.53■■□□□ 1.68
SHMT1-209ENST00000582653 INTS3Q68E01 1043 aaKnown RBP25.53■■□□□ 1.68
SHMT1-209ENST00000582653 PA2G4Q9UQ80 394 aaKnown RBP25.53■■□□□ 1.68
SHMT1-209ENST00000582653 SLC5A1P13866 664 aa25.52■■□□□ 1.68
SHMT1-209ENST00000582653 FRAT1Q92837 279 aaPredicted RBP25.52■■□□□ 1.68
SHMT1-209ENST00000582653 ZDHHC15Q96MV8 337 aa25.52■■□□□ 1.68
SHMT1-209ENST00000582653 HNRNPUQ00839 825 aaKnown RBP eCLIP25.51■■□□□ 1.67
SHMT1-209ENST00000582653 TMEM39BQ9GZU3 492 aa25.51■■□□□ 1.67
SHMT1-209ENST00000582653 CIAO1O76071 339 aa25.5■■□□□ 1.67
SHMT1-209ENST00000582653 GJA5P36382 358 aa25.5■■□□□ 1.67
SHMT1-209ENST00000582653 APOBEC3HQ6NTF7 200 aaKnown RBP25.5■■□□□ 1.67
SHMT1-209ENST00000582653 HHIPL2Q6UWX4 724 aa25.5■■□□□ 1.67
SHMT1-209ENST00000582653 WDR66Q8TBY9 1149 aa25.5■■□□□ 1.67
SHMT1-209ENST00000582653 ARAP2Q8WZ64 1704 aa25.5■■□□□ 1.67
SHMT1-209ENST00000582653 CEP126Q9P2H0 1117 aa25.5■■□□□ 1.67
SHMT1-209ENST00000582653 HPS5Q9UPZ3 1129 aa25.5■■□□□ 1.67
SHMT1-209ENST00000582653 TESPA1A2RU30 521 aaPredicted RBP25.49■■□□□ 1.67
SHMT1-209ENST00000582653 IGF2BP3O00425 579 aaKnown RBP eCLIP25.49■■□□□ 1.67
SHMT1-209ENST00000582653 TRIM27P14373 513 aa25.49■■□□□ 1.67
SHMT1-209ENST00000582653 MAP3K9P80192 1104 aa25.49■■□□□ 1.67
SHMT1-209ENST00000582653 FKBP1CQ5VVH2 108 aa25.49■■□□□ 1.67
SHMT1-209ENST00000582653 OTUD7BQ6GQQ9 843 aa25.49■■□□□ 1.67
SHMT1-209ENST00000582653 CDAN1Q8IWY9 1227 aa25.49■■□□□ 1.67
SHMT1-209ENST00000582653 MAST3O60307 1309 aa25.48■■□□□ 1.67
SHMT1-209ENST00000582653 IPO8O15397 1037 aaKnown RBP25.48■■□□□ 1.67
SHMT1-209ENST00000582653 ATP2B3Q16720 1220 aa25.48■■□□□ 1.67
SHMT1-209ENST00000582653 PPP1R3FQ6ZSY5 799 aaPredicted RBP25.48■■□□□ 1.67
SHMT1-209ENST00000582653 FAM83AQ86UY5 434 aa25.48■■□□□ 1.67
SHMT1-209ENST00000582653 CLUAP1Q96AJ1 413 aa25.48■■□□□ 1.67
SHMT1-209ENST00000582653 ATF7IPQ6VMQ6 1270 aa25.47■■□□□ 1.67
SHMT1-209ENST00000582653 OPTNQ96CV9 577 aa25.47■■□□□ 1.67
SHMT1-209ENST00000582653 ELP3Q9H9T3 547 aa25.47■■□□□ 1.67
SHMT1-209ENST00000582653 COPRSQ9NQ92 184 aa25.47■■□□□ 1.67
SHMT1-209ENST00000582653 GNAI3P08754 354 aa25.46■■□□□ 1.67
SHMT1-209ENST00000582653 IL15P40933 162 aaPredicted RBP25.46■■□□□ 1.67
SHMT1-209ENST00000582653 CACNB3P54284 484 aa25.46■■□□□ 1.67
SHMT1-209ENST00000582653 FBXO46Q6PJ61 603 aaPredicted RBP25.46■■□□□ 1.67
SHMT1-209ENST00000582653 PTPN18Q99952 460 aa25.46■■□□□ 1.67
SHMT1-209ENST00000582653 TMOD2Q9NZR1 351 aa25.46■■□□□ 1.67
SHMT1-209ENST00000582653 SOX10P56693 466 aa25.45■■□□□ 1.66
SHMT1-209ENST00000582653 DDX55Q8NHQ9 600 aaKnown RBP eCLIP25.45■■□□□ 1.66
SHMT1-209ENST00000582653 SRGAP3O43295 1099 aa25.44■■□□□ 1.66
SHMT1-209ENST00000582653 MS4A4AQ96JQ5 239 aa25.44■■□□□ 1.66
SHMT1-209ENST00000582653 GNL3LQ9NVN8 582 aaKnown RBP25.44■■□□□ 1.66
SHMT1-209ENST00000582653 ADORA1P30542 326 aa25.43■■□□□ 1.66
SHMT1-209ENST00000582653 VGLL4Q14135 290 aa25.43■■□□□ 1.66
SHMT1-209ENST00000582653 HOOK2Q96ED9 719 aa25.43■■□□□ 1.66
SHMT1-209ENST00000582653 CSADQ9Y600 493 aa25.43■■□□□ 1.66
SHMT1-209ENST00000582653 ZBTB22O15209 634 aa25.42■■□□□ 1.66
SHMT1-209ENST00000582653 PHKA1P46020 1223 aa25.42■■□□□ 1.66
SHMT1-209ENST00000582653 LAMB1P07942 1786 aa25.41■■□□□ 1.66
SHMT1-209ENST00000582653 TIMM10P62072 90 aa25.41■■□□□ 1.66
SHMT1-209ENST00000582653 CRHR2Q13324 411 aa25.41■■□□□ 1.66
SHMT1-209ENST00000582653 MTX1Q13505 466 aa25.41■■□□□ 1.66
SHMT1-209ENST00000582653 DENND2AQ9ULE3 1009 aa25.41■■□□□ 1.66
SHMT1-209ENST00000582653 SEMA3EO15041 775 aa25.4■■□□□ 1.66
SHMT1-209ENST00000582653 GTF2A2P52657 109 aa25.4■■□□□ 1.66
SHMT1-209ENST00000582653 TMEM57Q8N5G2 664 aa25.4■■□□□ 1.66
SHMT1-209ENST00000582653 CNKSR2Q8WXI2 1034 aa25.4■■□□□ 1.66
SHMT1-209ENST00000582653 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.4■■□□□ 1.66
SHMT1-209ENST00000582653 SALL1Q9NSC2 1324 aa25.39■■□□□ 1.66
SHMT1-209ENST00000582653 GNAI2P04899 355 aa25.39■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms