RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 ERO1AQ96HE7 468 aa12.53□□□□□ -0.4
SS18-207ENST00000577636 C1orf115Q9H7X2 142 aa12.53□□□□□ -0.4
SS18-207ENST00000577636 EFCC1Q9HA90 598 aa12.53□□□□□ -0.4
SS18-207ENST00000577636 PTPN22Q9Y2R2 807 aa12.53□□□□□ -0.4
SS18-207ENST00000577636 H7C1W4 665 aa12.52□□□□□ -0.41
SS18-207ENST00000577636 MYO1BO43795 1136 aa12.52□□□□□ -0.41
SS18-207ENST00000577636 MYCP01106 439 aaPredicted RBP12.52□□□□□ -0.41
SS18-207ENST00000577636 CHRNDQ07001 517 aa12.52□□□□□ -0.41
SS18-207ENST00000577636 SUPT20HL1Q3ZLR7 823 aa12.52□□□□□ -0.41
SS18-207ENST00000577636 CFAP100Q494V2 611 aa12.52□□□□□ -0.41
SS18-207ENST00000577636 ANKRD44Q8N8A2 993 aa12.52□□□□□ -0.41
SS18-207ENST00000577636 ZBED3Q96IU2 234 aaPredicted RBP12.52□□□□□ -0.41
SS18-207ENST00000577636 CHMP3Q9Y3E7 222 aa12.52□□□□□ -0.41
SS18-207ENST00000577636 ALDH1L1O75891 902 aa12.51□□□□□ -0.41
SS18-207ENST00000577636 ZBTB48P10074 688 aaPredicted RBP12.51□□□□□ -0.41
SS18-207ENST00000577636 IREB2P48200 963 aaKnown RBP12.51□□□□□ -0.41
SS18-207ENST00000577636 SP3Q02447 781 aa12.51□□□□□ -0.41
SS18-207ENST00000577636 CRHR2Q13324 411 aa12.51□□□□□ -0.41
SS18-207ENST00000577636 CERS5Q8N5B7 392 aa12.51□□□□□ -0.41
SS18-207ENST00000577636 PRMT6Q96LA8 375 aaPredicted RBP12.51□□□□□ -0.41
SS18-207ENST00000577636 MEIS3Q99687 375 aa12.51□□□□□ -0.41
SS18-207ENST00000577636 TMEM106CQ9BVX2 250 aa12.51□□□□□ -0.41
SS18-207ENST00000577636 ANKRD18BA2A2Z9 1011 aa12.5□□□□□ -0.41
SS18-207ENST00000577636 USP2O75604 605 aaPredicted RBP12.5□□□□□ -0.41
SS18-207ENST00000577636 GJA5P36382 358 aa12.5□□□□□ -0.41
SS18-207ENST00000577636 MAP3K11Q16584 847 aa12.5□□□□□ -0.41
SS18-207ENST00000577636 ELP3Q9H9T3 547 aa12.5□□□□□ -0.41
SS18-207ENST00000577636 C9orf78Q9NZ63 289 aaPredicted RBP12.5□□□□□ -0.41
SS18-207ENST00000577636 PSME4Q14997 1843 aa12.5□□□□□ -0.41
SS18-207ENST00000577636 PDE4AP27815 886 aa12.49□□□□□ -0.41
SS18-207ENST00000577636 NUCB1Q02818 461 aa12.49□□□□□ -0.41
SS18-207ENST00000577636 GCKRQ14397 625 aa12.49□□□□□ -0.41
SS18-207ENST00000577636 RASA3Q14644 834 aa12.49□□□□□ -0.41
SS18-207ENST00000577636 SLC4A8Q2Y0W8 1093 aa12.49□□□□□ -0.41
SS18-207ENST00000577636 BEND3Q5T5X7 828 aa12.49□□□□□ -0.41
SS18-207ENST00000577636 ANKRD45Q5TZF3 282 aa12.49□□□□□ -0.41
SS18-207ENST00000577636 CEP85Q6P2H3 762 aa12.49□□□□□ -0.41
SS18-207ENST00000577636 CHD1LQ86WJ1 897 aa12.49□□□□□ -0.41
SS18-207ENST00000577636 LINS1Q8NG48 757 aa12.49□□□□□ -0.41
SS18-207ENST00000577636 PTPN18Q99952 460 aa12.49□□□□□ -0.41
SS18-207ENST00000577636 RBM19Q9Y4C8 960 aaKnown RBP12.49□□□□□ -0.41
SS18-207ENST00000577636 PPP2R3BQ9Y5P8 575 aa12.49□□□□□ -0.41
SS18-207ENST00000577636 CACNA1FO60840 1977 aa12.49□□□□□ -0.41
SS18-207ENST00000577636 AOX1Q06278 1338 aa12.48□□□□□ -0.41
SS18-207ENST00000577636 SPDYE2BA6NHP3 402 aa12.48□□□□□ -0.41
SS18-207ENST00000577636 ECM2O94769 699 aaPredicted RBP12.48□□□□□ -0.41
SS18-207ENST00000577636 CSF1RP07333 972 aa12.48□□□□□ -0.41
SS18-207ENST00000577636 SPDYE6P0CI01 402 aa12.48□□□□□ -0.41
SS18-207ENST00000577636 ZNF804AQ7Z570 1209 aa12.48□□□□□ -0.41
SS18-207ENST00000577636 ANKRD13AQ8IZ07 590 aa12.48□□□□□ -0.41
SS18-207ENST00000577636 MTMR14Q8NCE2 650 aa12.48□□□□□ -0.41
SS18-207ENST00000577636 OPTNQ96CV9 577 aa12.48□□□□□ -0.41
SS18-207ENST00000577636 SPEF2Q9C093 1822 aa12.48□□□□□ -0.41
SS18-207ENST00000577636 CAP1Q01518 475 aa12.47□□□□□ -0.41
SS18-207ENST00000577636 IFIT5Q13325 482 aaKnown RBP12.47□□□□□ -0.41
SS18-207ENST00000577636 TAF7LQ5H9L4 462 aa12.47□□□□□ -0.41
SS18-207ENST00000577636 PLA2G12BQ9BX93 195 aa12.47□□□□□ -0.41
SS18-207ENST00000577636 USP44Q9H0E7 712 aa12.47□□□□□ -0.41
SS18-207ENST00000577636 DCTPP1Q9H773 170 aa12.47□□□□□ -0.41
SS18-207ENST00000577636 TDRD3Q9H7E2 651 aaKnown RBP12.47□□□□□ -0.41
SS18-207ENST00000577636 TCP10L2B9ZVM9 353 aa12.46□□□□□ -0.41
SS18-207ENST00000577636 CASP7P55210 303 aa12.46□□□□□ -0.41
SS18-207ENST00000577636 TAF1CQ15572 869 aaPredicted RBP12.46□□□□□ -0.41
SS18-207ENST00000577636 SLC9C1Q4G0N8 1177 aa12.46□□□□□ -0.41
SS18-207ENST00000577636 NBPF11Q86T75 865 aa12.46□□□□□ -0.41
SS18-207ENST00000577636 CNKSR2Q8WXI2 1034 aa12.46□□□□□ -0.41
SS18-207ENST00000577636 ARMC5Q96C12 935 aa12.46□□□□□ -0.41
SS18-207ENST00000577636 ZNF594Q96JF6 807 aaPredicted RBP12.46□□□□□ -0.41
SS18-207ENST00000577636 ZFYVE28Q9HCC9 887 aa12.46□□□□□ -0.41
SS18-207ENST00000577636 COLQQ9Y215 455 aaPredicted RBP12.46□□□□□ -0.41
SS18-207ENST00000577636 LRRFIP2Q9Y608 721 aaKnown RBP12.46□□□□□ -0.41
SS18-207ENST00000577636 SSC5DA1L4H1 1573 aa12.46□□□□□ -0.42
SS18-207ENST00000577636 COL1A1P02452 1464 aaPredicted RBP12.46□□□□□ -0.42
SS18-207ENST00000577636 CCL15-CCL14A0A0B4J2E2 113 aa12.45□□□□□ -0.42
SS18-207ENST00000577636 UNCXA6NJT0 531 aa12.45□□□□□ -0.42
SS18-207ENST00000577636 IL1R1P14778 569 aa12.45□□□□□ -0.42
SS18-207ENST00000577636 FXR1P51114 621 aaKnown RBP eCLIP12.45□□□□□ -0.42
SS18-207ENST00000577636 ATP8B2P98198 1209 aa12.45□□□□□ -0.42
SS18-207ENST00000577636 ARHGEF6Q15052 776 aa12.45□□□□□ -0.42
SS18-207ENST00000577636 CCL15Q16663 113 aa12.45□□□□□ -0.42
SS18-207ENST00000577636 SKAP1Q86WV1 359 aa12.45□□□□□ -0.42
SS18-207ENST00000577636 SIRT2Q8IXJ6 389 aa12.45□□□□□ -0.42
SS18-207ENST00000577636 BACH2Q9BYV9 841 aa12.45□□□□□ -0.42
SS18-207ENST00000577636 CNNM1Q9NRU3 951 aa12.45□□□□□ -0.42
SS18-207ENST00000577636 ZNF70Q9UC06 446 aaPredicted RBP12.45□□□□□ -0.42
SS18-207ENST00000577636 TTF2Q9UNY4 1162 aaKnown RBP12.45□□□□□ -0.42
SS18-207ENST00000577636 PTCH2Q9Y6C5 1203 aa12.45□□□□□ -0.42
SS18-207ENST00000577636 TESPA1A2RU30 521 aaPredicted RBP12.44□□□□□ -0.42
SS18-207ENST00000577636 TNFAIP1Q13829 316 aa12.44□□□□□ -0.42
SS18-207ENST00000577636 CCDC57Q2TAC2 916 aa12.44□□□□□ -0.42
SS18-207ENST00000577636 HSP90AB4PQ58FF6 505 aa12.44□□□□□ -0.42
SS18-207ENST00000577636 LDHAL6AQ6ZMR3 332 aa12.44□□□□□ -0.42
SS18-207ENST00000577636 CDAN1Q8IWY9 1227 aa12.44□□□□□ -0.42
SS18-207ENST00000577636 BRI3BPQ8WY22 251 aa12.44□□□□□ -0.42
SS18-207ENST00000577636 OTUD5Q96G74 571 aa12.44□□□□□ -0.42
SS18-207ENST00000577636 ZNF333Q96JL9 665 aa12.44□□□□□ -0.42
SS18-207ENST00000577636 MS4A4AQ96JQ5 239 aa12.44□□□□□ -0.42
SS18-207ENST00000577636 LNPKQ9C0E8 428 aa12.44□□□□□ -0.42
SS18-207ENST00000577636 IRS2Q9Y4H2 1338 aa12.43□□□□□ -0.42
SS18-207ENST00000577636 MKI67P46013 3256 aaKnown RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms