RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 CDC37L1Q7L3B6 337 aa10.12□□□□□ -0.79
VPS53-214ENST00000572607 SAMD7Q7Z3H4 446 aa10.12□□□□□ -0.79
VPS53-214ENST00000572607 ANKRD44Q8N8A2 993 aa10.12□□□□□ -0.79
VPS53-214ENST00000572607 DCPSQ96C86 337 aaKnown RBP10.12□□□□□ -0.79
VPS53-214ENST00000572607 TLL2Q9Y6L7 1015 aa10.12□□□□□ -0.79
VPS53-214ENST00000572607 PDE4DIPQ5VU43 2346 aa10.12□□□□□ -0.79
VPS53-214ENST00000572607 SPEF2Q9C093 1822 aa10.12□□□□□ -0.79
VPS53-214ENST00000572607 ZNF609O15014 1411 aa10.11□□□□□ -0.79
VPS53-214ENST00000572607 SHTN1A0MZ66 631 aa10.11□□□□□ -0.79
VPS53-214ENST00000572607 WTIPA6NIX2 430 aaPredicted RBP10.11□□□□□ -0.79
VPS53-214ENST00000572607 GNAI3P08754 354 aa10.11□□□□□ -0.79
VPS53-214ENST00000572607 KLRK1P26718 216 aa10.11□□□□□ -0.79
VPS53-214ENST00000572607 HIRAP54198 1017 aaPredicted RBP10.11□□□□□ -0.79
VPS53-214ENST00000572607 UBE4AQ14139 1066 aa10.11□□□□□ -0.79
VPS53-214ENST00000572607 TTLL5Q6EMB2 1281 aa10.11□□□□□ -0.79
VPS53-214ENST00000572607 ATF7IPQ6VMQ6 1270 aa10.11□□□□□ -0.79
VPS53-214ENST00000572607 C15orf52Q6ZUT6 534 aaKnown RBP10.11□□□□□ -0.79
VPS53-214ENST00000572607 TXNRD3Q86VQ6 643 aa10.11□□□□□ -0.79
VPS53-214ENST00000572607 HS6ST3Q8IZP7 471 aa10.11□□□□□ -0.79
VPS53-214ENST00000572607 CD209Q9NNX6 404 aa10.11□□□□□ -0.79
VPS53-214ENST00000572607 HDAC9Q9UKV0 1011 aa10.11□□□□□ -0.79
VPS53-214ENST00000572607 BCAR3O75815 825 aa10.1□□□□□ -0.79
VPS53-214ENST00000572607 MMP14P50281 582 aa10.1□□□□□ -0.79
VPS53-214ENST00000572607 ZNF280AP59817 542 aaPredicted RBP10.1□□□□□ -0.79
VPS53-214ENST00000572607 GTF2IP78347 998 aa10.1□□□□□ -0.79
VPS53-214ENST00000572607 MLLT1Q03111 559 aaPredicted RBP10.1□□□□□ -0.79
VPS53-214ENST00000572607 DACT2Q5SW24 774 aa10.1□□□□□ -0.79
VPS53-214ENST00000572607 PAXIP1Q6ZW49 1069 aaPredicted RBP10.1□□□□□ -0.79
VPS53-214ENST00000572607 VPS37DQ86XT2 251 aa10.1□□□□□ -0.79
VPS53-214ENST00000572607 SULF1Q8IWU6 871 aa10.1□□□□□ -0.79
VPS53-214ENST00000572607 FTSJ3Q8IY81 847 aaKnown RBP10.1□□□□□ -0.79
VPS53-214ENST00000572607 PTCD2Q8WV60 388 aaKnown RBP10.1□□□□□ -0.79
VPS53-214ENST00000572607 ZIC5Q96T25 663 aa10.1□□□□□ -0.79
VPS53-214ENST00000572607 GLIS2Q9BZE0 524 aaPredicted RBP10.1□□□□□ -0.79
VPS53-214ENST00000572607 PUS3Q9BZE2 481 aaKnown RBP10.1□□□□□ -0.79
VPS53-214ENST00000572607 ZNF408Q9H9D4 720 aa10.1□□□□□ -0.79
VPS53-214ENST00000572607 MYOZ2Q9NPC6 264 aa10.1□□□□□ -0.79
VPS53-214ENST00000572607 PGAP2Q9UHJ9 254 aa10.1□□□□□ -0.79
VPS53-214ENST00000572607 CCDC85CA6NKD9 419 aa10.09□□□□□ -0.79
VPS53-214ENST00000572607 SNAP23O00161 211 aa10.09□□□□□ -0.79
VPS53-214ENST00000572607 PDE8BO95263 885 aa10.09□□□□□ -0.79
VPS53-214ENST00000572607 CELF2O95319 508 aaKnown RBP10.09□□□□□ -0.79
VPS53-214ENST00000572607 TRIM27P14373 513 aa10.09□□□□□ -0.79
VPS53-214ENST00000572607 IL1R1P14778 569 aa10.09□□□□□ -0.79
VPS53-214ENST00000572607 HIBADHP31937 336 aaKnown RBP10.09□□□□□ -0.79
VPS53-214ENST00000572607 FOXK1P85037 733 aa10.09□□□□□ -0.79
VPS53-214ENST00000572607 CAVIN4Q5BKX8 364 aa10.09□□□□□ -0.79
VPS53-214ENST00000572607 INTS3Q68E01 1043 aaKnown RBP10.09□□□□□ -0.79
VPS53-214ENST00000572607 KRT26Q7Z3Y9 468 aa10.09□□□□□ -0.79
VPS53-214ENST00000572607 SAPCD2Q86UD0 394 aa10.09□□□□□ -0.79
VPS53-214ENST00000572607 USP48Q86UV5 1035 aa10.09□□□□□ -0.79
VPS53-214ENST00000572607 MCOLN1Q9GZU1 580 aa10.09□□□□□ -0.79
VPS53-214ENST00000572607 GGA3Q9NZ52 723 aa10.09□□□□□ -0.79
VPS53-214ENST00000572607 RIPOR2Q9Y4F9 1068 aa10.09□□□□□ -0.79
VPS53-214ENST00000572607 LRRFIP2Q9Y608 721 aaKnown RBP10.09□□□□□ -0.79
VPS53-214ENST00000572607 EYA2O00167 538 aa10.08□□□□□ -0.8
VPS53-214ENST00000572607 FRAT2O75474 233 aaPredicted RBP10.08□□□□□ -0.8
VPS53-214ENST00000572607 IFIT1P09914 478 aaKnown RBP10.08□□□□□ -0.8
VPS53-214ENST00000572607 MAP2K2P36507 400 aa10.08□□□□□ -0.8
VPS53-214ENST00000572607 ECE1P42892 770 aa10.08□□□□□ -0.8
VPS53-214ENST00000572607 SCARF1Q14162 830 aa10.08□□□□□ -0.8
VPS53-214ENST00000572607 PUM3Q15397 648 aaKnown RBP10.08□□□□□ -0.8
VPS53-214ENST00000572607 LRRC24Q50LG9 513 aa10.08□□□□□ -0.8
VPS53-214ENST00000572607 ANGEL2Q5VTE6 544 aaKnown RBP10.08□□□□□ -0.8
VPS53-214ENST00000572607 KIAA0825Q8IV33 1275 aa10.08□□□□□ -0.8
VPS53-214ENST00000572607 KLHDC4Q8TBB5 520 aa10.08□□□□□ -0.8
VPS53-214ENST00000572607 CLUAP1Q96AJ1 413 aa10.08□□□□□ -0.8
VPS53-214ENST00000572607 GMLQ99445 158 aa10.08□□□□□ -0.8
VPS53-214ENST00000572607 MEIS3Q99687 375 aa10.08□□□□□ -0.8
VPS53-214ENST00000572607 MXD3Q9BW11 206 aa10.08□□□□□ -0.8
VPS53-214ENST00000572607 GPHNQ9NQX3 736 aaPredicted RBP10.08□□□□□ -0.8
VPS53-214ENST00000572607 IRS2Q9Y4H2 1338 aa10.07□□□□□ -0.8
VPS53-214ENST00000572607 SCN9AQ15858 1988 aa10.07□□□□□ -0.8
VPS53-214ENST00000572607 CIAO1O76071 339 aa10.07□□□□□ -0.8
VPS53-214ENST00000572607 SASH1O94885 1247 aa10.07□□□□□ -0.8
VPS53-214ENST00000572607 EGFRP00533 1210 aa10.07□□□□□ -0.8
VPS53-214ENST00000572607 GNAI2P04899 355 aa10.07□□□□□ -0.8
VPS53-214ENST00000572607 SLC5A1P13866 664 aa10.07□□□□□ -0.8
VPS53-214ENST00000572607 GYG1P46976 350 aa10.07□□□□□ -0.8
VPS53-214ENST00000572607 FKBP1AP62942 108 aaKnown RBP10.07□□□□□ -0.8
VPS53-214ENST00000572607 DLK2Q6UY11 383 aa10.07□□□□□ -0.8
VPS53-214ENST00000572607 PITPNM2Q9BZ72 1349 aa10.07□□□□□ -0.8
VPS53-214ENST00000572607 AKAP11Q9UKA4 1901 aa10.06□□□□□ -0.8
VPS53-214ENST00000572607 ADM5C9JUS6 153 aa10.06□□□□□ -0.8
VPS53-214ENST00000572607 SRGAP3O43295 1099 aa10.06□□□□□ -0.8
VPS53-214ENST00000572607 MS4A1P11836 297 aa10.06□□□□□ -0.8
VPS53-214ENST00000572607 IL15P40933 162 aaPredicted RBP10.06□□□□□ -0.8
VPS53-214ENST00000572607 RFX5P48382 616 aaPredicted RBP10.06□□□□□ -0.8
VPS53-214ENST00000572607 PTPN12Q05209 780 aaKnown RBP10.06□□□□□ -0.8
VPS53-214ENST00000572607 GRM1Q13255 1194 aa10.06□□□□□ -0.8
VPS53-214ENST00000572607 PLPP6Q8IY26 295 aa10.06□□□□□ -0.8
VPS53-214ENST00000572607 DZIP1LQ8IYY4 767 aaKnown RBP10.06□□□□□ -0.8
VPS53-214ENST00000572607 TMEM57Q8N5G2 664 aa10.06□□□□□ -0.8
VPS53-214ENST00000572607 C2orf69Q8N8R5 385 aa10.06□□□□□ -0.8
VPS53-214ENST00000572607 HHIPL1Q96JK4 782 aa10.06□□□□□ -0.8
VPS53-214ENST00000572607 FAM84BQ96KN1 310 aaPredicted RBP10.06□□□□□ -0.8
VPS53-214ENST00000572607 SIL1Q9H173 461 aa10.06□□□□□ -0.8
VPS53-214ENST00000572607 CEP126Q9P2H0 1117 aa10.06□□□□□ -0.8
VPS53-214ENST00000572607 JAG2Q9Y219 1238 aa10.06□□□□□ -0.8
VPS53-214ENST00000572607 F8W031 263 aaPredicted RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms