RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 SOX1O00570 391 aaPredicted RBP14.17□□□□□ -0.14
VPS53-207ENST00000570510 TAF5LO75529 589 aa14.17□□□□□ -0.14
VPS53-207ENST00000570510 TFRCP02786 760 aaKnown RBP14.17□□□□□ -0.14
VPS53-207ENST00000570510 SPDYE2Q495Y8 402 aa14.17□□□□□ -0.14
VPS53-207ENST00000570510 KSR2Q6VAB6 950 aa14.17□□□□□ -0.14
VPS53-207ENST00000570510 PI4KAP1Q8N8J0 262 aa14.17□□□□□ -0.14
VPS53-207ENST00000570510 U2AF1L4Q8WU68 220 aaKnown RBP14.17□□□□□ -0.14
VPS53-207ENST00000570510 TMEM39BQ9GZU3 492 aa14.17□□□□□ -0.14
VPS53-207ENST00000570510 TTF2Q9UNY4 1162 aaKnown RBP14.17□□□□□ -0.14
VPS53-207ENST00000570510 ANKRD18BA2A2Z9 1011 aa14.16□□□□□ -0.14
VPS53-207ENST00000570510 SPDYE5A6NIY4 337 aa14.16□□□□□ -0.14
VPS53-207ENST00000570510 IL1R1P14778 569 aa14.16□□□□□ -0.14
VPS53-207ENST00000570510 OSBPP22059 807 aa14.16□□□□□ -0.14
VPS53-207ENST00000570510 CALD1Q05682 793 aaKnown RBP14.16□□□□□ -0.14
VPS53-207ENST00000570510 CWF19L2Q2TBE0 894 aaKnown RBP14.16□□□□□ -0.14
VPS53-207ENST00000570510 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.16□□□□□ -0.14
VPS53-207ENST00000570510 HOOK2Q96ED9 719 aa14.16□□□□□ -0.14
VPS53-207ENST00000570510 WRNIP1Q96S55 665 aa14.16□□□□□ -0.14
VPS53-207ENST00000570510 SERPINA10Q9UK55 444 aa14.16□□□□□ -0.14
VPS53-207ENST00000570510 CHMP3Q9Y3E7 222 aa14.16□□□□□ -0.14
VPS53-207ENST00000570510 COL6A3P12111 3177 aa14.16□□□□□ -0.14
VPS53-207ENST00000570510 SNAP23O00161 211 aa14.15□□□□□ -0.14
VPS53-207ENST00000570510 IRF6O14896 467 aa14.15□□□□□ -0.14
VPS53-207ENST00000570510 PLIN1O60240 522 aa14.15□□□□□ -0.14
VPS53-207ENST00000570510 IGKV5-2P06315 115 aa14.15□□□□□ -0.14
VPS53-207ENST00000570510 GNAI1P63096 354 aa14.15□□□□□ -0.14
VPS53-207ENST00000570510 MFSD14BQ5SR56 506 aa14.15□□□□□ -0.14
VPS53-207ENST00000570510 DZIP1LQ8IYY4 767 aaKnown RBP14.15□□□□□ -0.14
VPS53-207ENST00000570510 STK31Q9BXU1 1019 aa14.15□□□□□ -0.14
VPS53-207ENST00000570510 TMOD2Q9NZR1 351 aa14.15□□□□□ -0.14
VPS53-207ENST00000570510 CUL9Q8IWT3 2517 aa14.15□□□□□ -0.14
VPS53-207ENST00000570510 SPEF2Q9C093 1822 aa14.15□□□□□ -0.14
VPS53-207ENST00000570510 AOX1Q06278 1338 aa14.15□□□□□ -0.15
VPS53-207ENST00000570510 LAMB1P07942 1786 aa14.14□□□□□ -0.15
VPS53-207ENST00000570510 SGPL1O95470 568 aa14.14□□□□□ -0.15
VPS53-207ENST00000570510 FCGRTP55899 365 aa14.14□□□□□ -0.15
VPS53-207ENST00000570510 TAF7LQ5H9L4 462 aa14.14□□□□□ -0.15
VPS53-207ENST00000570510 C17orf99Q6UX52 265 aa14.14□□□□□ -0.15
VPS53-207ENST00000570510 UBE2Q1Q7Z7E8 422 aa14.14□□□□□ -0.15
VPS53-207ENST00000570510 SLAIN1Q8ND83 568 aa14.14□□□□□ -0.15
VPS53-207ENST00000570510 NEURL1BA8MQ27 555 aa14.13□□□□□ -0.15
VPS53-207ENST00000570510 PDHXO00330 501 aa14.13□□□□□ -0.15
VPS53-207ENST00000570510 IFIT5Q13325 482 aaKnown RBP14.13□□□□□ -0.15
VPS53-207ENST00000570510 PPIL2Q13356 520 aa14.13□□□□□ -0.15
VPS53-207ENST00000570510 GPR153Q6NV75 609 aa14.13□□□□□ -0.15
VPS53-207ENST00000570510 C15orf52Q6ZUT6 534 aaKnown RBP14.13□□□□□ -0.15
VPS53-207ENST00000570510 CDAN1Q8IWY9 1227 aa14.13□□□□□ -0.15
VPS53-207ENST00000570510 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.13□□□□□ -0.15
VPS53-207ENST00000570510 ZKSCAN4Q969J2 545 aaPredicted RBP14.13□□□□□ -0.15
VPS53-207ENST00000570510 TEPSINQ96N21 525 aa14.13□□□□□ -0.15
VPS53-207ENST00000570510 UNC93B1Q9H1C4 597 aa14.13□□□□□ -0.15
VPS53-207ENST00000570510 MYH16Q9H6N6 1097 aa14.13□□□□□ -0.15
VPS53-207ENST00000570510 STXBP5LQ9Y2K9 1186 aa14.13□□□□□ -0.15
VPS53-207ENST00000570510 ZNF646O15015 1829 aaPredicted RBP14.13□□□□□ -0.15
VPS53-207ENST00000570510 H7C1W4 665 aa14.12□□□□□ -0.15
VPS53-207ENST00000570510 CAPN2P17655 700 aa14.12□□□□□ -0.15
VPS53-207ENST00000570510 PRKCZQ05513 592 aa14.12□□□□□ -0.15
VPS53-207ENST00000570510 DCAF15Q66K64 600 aa14.12□□□□□ -0.15
VPS53-207ENST00000570510 IFT57Q9NWB7 429 aa14.12□□□□□ -0.15
VPS53-207ENST00000570510 SNCAIPQ9Y6H5 919 aa14.12□□□□□ -0.15
VPS53-207ENST00000570510 ECM29Q5VYK3 1845 aa14.12□□□□□ -0.15
VPS53-207ENST00000570510 ADCY3O60266 1144 aa14.11□□□□□ -0.15
VPS53-207ENST00000570510 FRAT2O75474 233 aaPredicted RBP14.11□□□□□ -0.15
VPS53-207ENST00000570510 CRKP46108 304 aa14.11□□□□□ -0.15
VPS53-207ENST00000570510 PPATQ06203 517 aa14.11□□□□□ -0.15
VPS53-207ENST00000570510 RALBP1Q15311 655 aa14.11□□□□□ -0.15
VPS53-207ENST00000570510 Q7L0L9 218 aa14.11□□□□□ -0.15
VPS53-207ENST00000570510 ANKRD23Q86SG2 305 aa14.11□□□□□ -0.15
VPS53-207ENST00000570510 DEFB118Q96PH6 123 aa14.11□□□□□ -0.15
VPS53-207ENST00000570510 PARK7Q99497 189 aaKnown RBP14.11□□□□□ -0.15
VPS53-207ENST00000570510 PLA2G12BQ9BX93 195 aa14.11□□□□□ -0.15
VPS53-207ENST00000570510 CNNM1Q9NRU3 951 aa14.11□□□□□ -0.15
VPS53-207ENST00000570510 TAOK2Q9UL54 1235 aa14.11□□□□□ -0.15
VPS53-207ENST00000570510 CSF1RP07333 972 aa14.1□□□□□ -0.15
VPS53-207ENST00000570510 CTGFP29279 349 aa14.1□□□□□ -0.15
VPS53-207ENST00000570510 GCKRQ14397 625 aa14.1□□□□□ -0.15
VPS53-207ENST00000570510 NECAB2Q7Z6G3 386 aa14.1□□□□□ -0.15
VPS53-207ENST00000570510 VPS37DQ86XT2 251 aa14.1□□□□□ -0.15
VPS53-207ENST00000570510 C8orf58Q8NAV2 365 aa14.1□□□□□ -0.15
VPS53-207ENST00000570510 COL25A1Q9BXS0 654 aaPredicted RBP14.1□□□□□ -0.15
VPS53-207ENST00000570510 OTOFQ9HC10 1997 aa14.09□□□□□ -0.15
VPS53-207ENST00000570510 HIBADHP31937 336 aaKnown RBP14.09□□□□□ -0.15
VPS53-207ENST00000570510 CACNB3P54284 484 aa14.09□□□□□ -0.15
VPS53-207ENST00000570510 CCDC57Q2TAC2 916 aa14.09□□□□□ -0.15
VPS53-207ENST00000570510 LDHAL6AQ6ZMR3 332 aa14.09□□□□□ -0.15
VPS53-207ENST00000570510 C7orf61Q8IZ16 206 aa14.09□□□□□ -0.15
VPS53-207ENST00000570510 PAWRQ96IZ0 340 aaKnown RBP14.09□□□□□ -0.15
VPS53-207ENST00000570510 ZNF341Q9BYN7 854 aa14.09□□□□□ -0.15
VPS53-207ENST00000570510 MYH3P11055 1940 aa14.09□□□□□ -0.15
VPS53-207ENST00000570510 FAM205AQ6ZU69 1335 aa14.09□□□□□ -0.15
VPS53-207ENST00000570510 ZSWIM8A7E2V4 1837 aa14.08□□□□□ -0.15
VPS53-207ENST00000570510 INHAP05111 366 aa14.08□□□□□ -0.16
VPS53-207ENST00000570510 ZNF853P0CG23 659 aa14.08□□□□□ -0.16
VPS53-207ENST00000570510 BMP8BP34820 402 aa14.08□□□□□ -0.16
VPS53-207ENST00000570510 MIGA2Q7L4E1 593 aa14.08□□□□□ -0.16
VPS53-207ENST00000570510 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.08□□□□□ -0.16
VPS53-207ENST00000570510 TEKT1Q969V4 418 aa14.08□□□□□ -0.16
VPS53-207ENST00000570510 ZMYND8Q9ULU4 1186 aaPredicted RBP14.08□□□□□ -0.16
VPS53-207ENST00000570510 LAMA3Q16787 3333 aa14.07□□□□□ -0.16
VPS53-207ENST00000570510 TNPO2O14787 897 aaKnown RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms