RNA–Protein interactions for RNA: ENST00000568755.1

VPS39-211, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-211ENST00000568755 POLA2Q14181 598 aa12.76□□□□□ -0.37
VPS39-211ENST00000568755 RASA3Q14644 834 aa12.76□□□□□ -0.37
VPS39-211ENST00000568755 RABL6Q3YEC7 729 aaPredicted RBP12.76□□□□□ -0.37
VPS39-211ENST00000568755 MFSD14BQ5SR56 506 aa12.76□□□□□ -0.37
VPS39-211ENST00000568755 SLC4A10Q6U841 1118 aa12.76□□□□□ -0.37
VPS39-211ENST00000568755 SERPINA10Q9UK55 444 aa12.76□□□□□ -0.37
VPS39-211ENST00000568755 RIPOR2Q9Y4F9 1068 aa12.76□□□□□ -0.37
VPS39-211ENST00000568755 HIBADHP31937 336 aaKnown RBP12.75□□□□□ -0.37
VPS39-211ENST00000568755 IREB2P48200 963 aaKnown RBP12.75□□□□□ -0.37
VPS39-211ENST00000568755 RBM5P52756 815 aaKnown RBP eCLIP12.75□□□□□ -0.37
VPS39-211ENST00000568755 ZNF70Q9UC06 446 aaPredicted RBP12.75□□□□□ -0.37
VPS39-211ENST00000568755 TTF2Q9UNY4 1162 aaKnown RBP12.75□□□□□ -0.37
VPS39-211ENST00000568755 MROH5Q6ZUA9 1318 aa12.74□□□□□ -0.37
VPS39-211ENST00000568755 TESPA1A2RU30 521 aaPredicted RBP12.74□□□□□ -0.37
VPS39-211ENST00000568755 ATXN8OSP0DMR3 200 aa12.74□□□□□ -0.37
VPS39-211ENST00000568755 TNFAIP1Q13829 316 aa12.74□□□□□ -0.37
VPS39-211ENST00000568755 FBXO33Q7Z6M2 555 aa12.74□□□□□ -0.37
VPS39-211ENST00000568755 CDAN1Q8IWY9 1227 aa12.74□□□□□ -0.37
VPS39-211ENST00000568755 DZIP1LQ8IYY4 767 aaKnown RBP12.74□□□□□ -0.37
VPS39-211ENST00000568755 ANKRD13AQ8IZ07 590 aa12.74□□□□□ -0.37
VPS39-211ENST00000568755 ANKRD44Q8N8A2 993 aa12.74□□□□□ -0.37
VPS39-211ENST00000568755 TEPSINQ96N21 525 aa12.74□□□□□ -0.37
VPS39-211ENST00000568755 BICC1Q9H694 974 aaKnown RBP12.74□□□□□ -0.37
VPS39-211ENST00000568755 TDRD3Q9H7E2 651 aaKnown RBP12.74□□□□□ -0.37
VPS39-211ENST00000568755 ZSWIM8A7E2V4 1837 aa12.74□□□□□ -0.37
VPS39-211ENST00000568755 ZNF316A6NFI3 1004 aaPredicted RBP12.73□□□□□ -0.37
VPS39-211ENST00000568755 CRKP46108 304 aa12.73□□□□□ -0.37
VPS39-211ENST00000568755 GRIK5Q16478 980 aa12.73□□□□□ -0.37
VPS39-211ENST00000568755 LRRC24Q50LG9 513 aa12.73□□□□□ -0.37
VPS39-211ENST00000568755 PRPF38BQ5VTL8 546 aaKnown RBP12.73□□□□□ -0.37
VPS39-211ENST00000568755 OTOP1Q7RTM1 612 aa12.73□□□□□ -0.37
VPS39-211ENST00000568755 FAM9BQ8IZU0 186 aa12.73□□□□□ -0.37
VPS39-211ENST00000568755 VGLL2Q8N8G2 317 aa12.73□□□□□ -0.37
VPS39-211ENST00000568755 PTPN18Q99952 460 aa12.73□□□□□ -0.37
VPS39-211ENST00000568755 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.73□□□□□ -0.37
VPS39-211ENST00000568755 MYH2Q9UKX2 1941 aa12.72□□□□□ -0.37
VPS39-211ENST00000568755 CRHR2Q13324 411 aa12.72□□□□□ -0.37
VPS39-211ENST00000568755 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.72□□□□□ -0.37
VPS39-211ENST00000568755 MRPL50Q8N5N7 158 aaKnown RBP12.72□□□□□ -0.37
VPS39-211ENST00000568755 MS4A4AQ96JQ5 239 aa12.72□□□□□ -0.37
VPS39-211ENST00000568755 TRIM17Q9Y577 477 aa12.72□□□□□ -0.37
VPS39-211ENST00000568755 CAP1Q01518 475 aa12.71□□□□□ -0.37
VPS39-211ENST00000568755 OPTNQ96CV9 577 aa12.71□□□□□ -0.37
VPS39-211ENST00000568755 TMEM39BQ9GZU3 492 aa12.71□□□□□ -0.37
VPS39-211ENST00000568755 ELP3Q9H9T3 547 aa12.71□□□□□ -0.37
VPS39-211ENST00000568755 IQSEC3Q9UPP2 1182 aaPredicted RBP12.71□□□□□ -0.37
VPS39-211ENST00000568755 PTPRCP08575 1304 aa12.7□□□□□ -0.38
VPS39-211ENST00000568755 TCP10L2B9ZVM9 353 aa12.7□□□□□ -0.38
VPS39-211ENST00000568755 PDE8BO95263 885 aa12.7□□□□□ -0.38
VPS39-211ENST00000568755 HDLBPQ00341 1268 aaKnown RBP12.7□□□□□ -0.38
VPS39-211ENST00000568755 VGLL4Q14135 290 aa12.7□□□□□ -0.38
VPS39-211ENST00000568755 METTL24Q5JXM2 366 aa12.7□□□□□ -0.38
VPS39-211ENST00000568755 OTUD7BQ6GQQ9 843 aa12.7□□□□□ -0.38
VPS39-211ENST00000568755 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.7□□□□□ -0.38
VPS39-211ENST00000568755 TBC1D22AQ8WUA7 517 aa12.7□□□□□ -0.38
VPS39-211ENST00000568755 ERO1AQ96HE7 468 aa12.7□□□□□ -0.38
VPS39-211ENST00000568755 PTPN22Q9Y2R2 807 aa12.7□□□□□ -0.38
VPS39-211ENST00000568755 PTPRFP10586 1907 aa12.7□□□□□ -0.38
VPS39-211ENST00000568755 KIF16BQ96L93 1317 aa12.69□□□□□ -0.38
VPS39-211ENST00000568755 FGFR2P21802 821 aa12.69□□□□□ -0.38
VPS39-211ENST00000568755 TNNI2P48788 182 aa12.69□□□□□ -0.38
VPS39-211ENST00000568755 BCAMP50895 628 aa12.69□□□□□ -0.38
VPS39-211ENST00000568755 CHAF1AQ13111 956 aaPredicted RBP12.69□□□□□ -0.38
VPS39-211ENST00000568755 CAVIN4Q5BKX8 364 aa12.69□□□□□ -0.38
VPS39-211ENST00000568755 VPS37DQ86XT2 251 aa12.69□□□□□ -0.38
VPS39-211ENST00000568755 KLHDC4Q8TBB5 520 aa12.69□□□□□ -0.38
VPS39-211ENST00000568755 CD99L2Q8TCZ2 262 aa12.69□□□□□ -0.38
VPS39-211ENST00000568755 BRI3BPQ8WY22 251 aa12.69□□□□□ -0.38
VPS39-211ENST00000568755 USP44Q9H0E7 712 aa12.69□□□□□ -0.38
VPS39-211ENST00000568755 DOCK2Q92608 1830 aa12.69□□□□□ -0.38
VPS39-211ENST00000568755 MGAMO43451 1857 aa12.68□□□□□ -0.38
VPS39-211ENST00000568755 DOCK3Q8IZD9 2030 aa12.68□□□□□ -0.38
VPS39-211ENST00000568755 TRIOBPQ9H2D6 2365 aa12.68□□□□□ -0.38
VPS39-211ENST00000568755 POTEFA5A3E0 1075 aa12.68□□□□□ -0.38
VPS39-211ENST00000568755 ZEB1P37275 1124 aaPredicted RBP12.68□□□□□ -0.38
VPS39-211ENST00000568755 CACNB3P54284 484 aa12.68□□□□□ -0.38
VPS39-211ENST00000568755 MAP3K9P80192 1104 aa12.68□□□□□ -0.38
VPS39-211ENST00000568755 SSH1Q8WYL5 1049 aa12.68□□□□□ -0.38
VPS39-211ENST00000568755 TEKT1Q969V4 418 aa12.68□□□□□ -0.38
VPS39-211ENST00000568755 ZDHHC15Q96MV8 337 aa12.68□□□□□ -0.38
VPS39-211ENST00000568755 MRIQ9BWK5 157 aa12.68□□□□□ -0.38
VPS39-211ENST00000568755 RPAP1Q9BWH6 1393 aaPredicted RBP12.68□□□□□ -0.38
VPS39-211ENST00000568755 RFX5P48382 616 aaPredicted RBP12.67□□□□□ -0.38
VPS39-211ENST00000568755 GTF2A2P52657 109 aa12.67□□□□□ -0.38
VPS39-211ENST00000568755 SP3Q02447 781 aa12.67□□□□□ -0.38
VPS39-211ENST00000568755 PUM3Q15397 648 aaKnown RBP12.67□□□□□ -0.38
VPS39-211ENST00000568755 INTS3Q68E01 1043 aaKnown RBP12.67□□□□□ -0.38
VPS39-211ENST00000568755 APOBEC3HQ6NTF7 200 aaKnown RBP12.67□□□□□ -0.38
VPS39-211ENST00000568755 FAM83AQ86UY5 434 aa12.67□□□□□ -0.38
VPS39-211ENST00000568755 FAM43AQ8N2R8 423 aa12.67□□□□□ -0.38
VPS39-211ENST00000568755 ARMC5Q96C12 935 aa12.67□□□□□ -0.38
VPS39-211ENST00000568755 EFCC1Q9HA90 598 aa12.67□□□□□ -0.38
VPS39-211ENST00000568755 SUGT1Q9Y2Z0 365 aa12.67□□□□□ -0.38
VPS39-211ENST00000568755 SNCAIPQ9Y6H5 919 aa12.67□□□□□ -0.38
VPS39-211ENST00000568755 MAST3O60307 1309 aa12.66□□□□□ -0.38
VPS39-211ENST00000568755 CCL15-CCL14A0A0B4J2E2 113 aa12.66□□□□□ -0.38
VPS39-211ENST00000568755 SPDYE5A6NIY4 337 aa12.66□□□□□ -0.38
VPS39-211ENST00000568755 E9PSI1 815 aa12.66□□□□□ -0.38
VPS39-211ENST00000568755 FRAT2O75474 233 aaPredicted RBP12.66□□□□□ -0.38
VPS39-211ENST00000568755 CCL15Q16663 113 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms