RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 CCL5P13501 91 aa15.17■□□□□ 0.02
CLK3-222ENST00000568232 MAP3K9P80192 1104 aa15.17■□□□□ 0.02
CLK3-222ENST00000568232 CHRNDQ07001 517 aa15.17■□□□□ 0.02
CLK3-222ENST00000568232 ZNF70Q9UC06 446 aaPredicted RBP15.17■□□□□ 0.02
CLK3-222ENST00000568232 STAP2Q9UGK3 403 aa15.17■□□□□ 0.02
CLK3-222ENST00000568232 GNRH1P01148 92 aa15.16■□□□□ 0.02
CLK3-222ENST00000568232 GJB1P08034 283 aa15.16■□□□□ 0.02
CLK3-222ENST00000568232 ITGA6P23229 1130 aa15.16■□□□□ 0.02
CLK3-222ENST00000568232 CWF19L2Q2TBE0 894 aaKnown RBP15.16■□□□□ 0.02
CLK3-222ENST00000568232 HELBQ8NG08 1087 aaPredicted RBP15.16■□□□□ 0.02
CLK3-222ENST00000568232 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.16■□□□□ 0.02
CLK3-222ENST00000568232 NKX2-3Q8TAU0 364 aa15.16■□□□□ 0.02
CLK3-222ENST00000568232 TRIM47Q96LD4 638 aa15.16■□□□□ 0.02
CLK3-222ENST00000568232 MPHOSPH8Q99549 860 aa15.16■□□□□ 0.02
CLK3-222ENST00000568232 TMEM39BQ9GZU3 492 aa15.16■□□□□ 0.02
CLK3-222ENST00000568232 RNF208Q9H0X6 261 aa15.16■□□□□ 0.02
CLK3-222ENST00000568232 TDRD3Q9H7E2 651 aaKnown RBP15.16■□□□□ 0.02
CLK3-222ENST00000568232 TCP10L2B9ZVM9 353 aa15.15■□□□□ 0.02
CLK3-222ENST00000568232 GRK4P32298 578 aa15.15■□□□□ 0.02
CLK3-222ENST00000568232 PSMC4P43686 418 aa15.15■□□□□ 0.02
CLK3-222ENST00000568232 PRMT2P55345 433 aa15.15■□□□□ 0.02
CLK3-222ENST00000568232 SRRDQ9UH36 339 aa15.15■□□□□ 0.02
CLK3-222ENST00000568232 CPA4Q9UI42 421 aa15.15■□□□□ 0.02
CLK3-222ENST00000568232 RIPOR2Q9Y4F9 1068 aa15.15■□□□□ 0.02
CLK3-222ENST00000568232 CSADQ9Y600 493 aa15.15■□□□□ 0.02
CLK3-222ENST00000568232 ECM29Q5VYK3 1845 aa15.15■□□□□ 0.02
CLK3-222ENST00000568232 A0A1W2PPC1 479 aa15.14■□□□□ 0.01
CLK3-222ENST00000568232 WDHD1O75717 1129 aaPredicted RBP15.14■□□□□ 0.01
CLK3-222ENST00000568232 FARP2O94887 1054 aaPredicted RBP15.14■□□□□ 0.01
CLK3-222ENST00000568232 DDX58O95786 925 aaKnown RBP15.14■□□□□ 0.01
CLK3-222ENST00000568232 CETPP11597 493 aa15.14■□□□□ 0.01
CLK3-222ENST00000568232 IL1R1P14778 569 aa15.14■□□□□ 0.01
CLK3-222ENST00000568232 OSBPP22059 807 aa15.14■□□□□ 0.01
CLK3-222ENST00000568232 C17orf99Q6UX52 265 aa15.14■□□□□ 0.01
CLK3-222ENST00000568232 Q7L0L9 218 aa15.14■□□□□ 0.01
CLK3-222ENST00000568232 UBE3BQ7Z3V4 1068 aa15.14■□□□□ 0.01
CLK3-222ENST00000568232 RAET1EQ8TD07 263 aa15.14■□□□□ 0.01
CLK3-222ENST00000568232 BIN2Q9UBW5 565 aaPredicted RBP15.14■□□□□ 0.01
CLK3-222ENST00000568232 PI4KAP2A4QPH2 592 aa15.13■□□□□ 0.01
CLK3-222ENST00000568232 SPDYE5A6NIY4 337 aa15.13■□□□□ 0.01
CLK3-222ENST00000568232 IRF6O14896 467 aa15.13■□□□□ 0.01
CLK3-222ENST00000568232 EVI5O60447 810 aa15.13■□□□□ 0.01
CLK3-222ENST00000568232 TNFAIP1Q13829 316 aa15.13■□□□□ 0.01
CLK3-222ENST00000568232 DEFB123Q8N688 67 aa15.13■□□□□ 0.01
CLK3-222ENST00000568232 PI4KAP1Q8N8J0 262 aa15.13■□□□□ 0.01
CLK3-222ENST00000568232 U2AF1L4Q8WU68 220 aaKnown RBP15.13■□□□□ 0.01
CLK3-222ENST00000568232 SNCAIPQ9Y6H5 919 aa15.13■□□□□ 0.01
CLK3-222ENST00000568232 H7C1W4 665 aa15.12■□□□□ 0.01
CLK3-222ENST00000568232 FMNL1O95466 1100 aaPredicted RBP15.12■□□□□ 0.01
CLK3-222ENST00000568232 FKBP1AP62942 108 aaKnown RBP15.12■□□□□ 0.01
CLK3-222ENST00000568232 KSR2Q6VAB6 950 aa15.12■□□□□ 0.01
CLK3-222ENST00000568232 C15orf52Q6ZUT6 534 aaKnown RBP15.12■□□□□ 0.01
CLK3-222ENST00000568232 C8orf58Q8NAV2 365 aa15.12■□□□□ 0.01
CLK3-222ENST00000568232 ZKSCAN4Q969J2 545 aaPredicted RBP15.12■□□□□ 0.01
CLK3-222ENST00000568232 COL25A1Q9BXS0 654 aaPredicted RBP15.12■□□□□ 0.01
CLK3-222ENST00000568232 UNC93B1Q9H1C4 597 aa15.12■□□□□ 0.01
CLK3-222ENST00000568232 MYPNQ86TC9 1320 aa15.12■□□□□ 0.01
CLK3-222ENST00000568232 NEURL1BA8MQ27 555 aa15.11■□□□□ 0.01
CLK3-222ENST00000568232 ZNF853P0CG23 659 aa15.11■□□□□ 0.01
CLK3-222ENST00000568232 ZNF804AQ7Z570 1209 aa15.11■□□□□ 0.01
CLK3-222ENST00000568232 DZIP1LQ8IYY4 767 aaKnown RBP15.11■□□□□ 0.01
CLK3-222ENST00000568232 RUNDC1Q96C34 613 aa15.11■□□□□ 0.01
CLK3-222ENST00000568232 ZCCHC17Q9NP64 241 aaKnown RBP15.11■□□□□ 0.01
CLK3-222ENST00000568232 TTF2Q9UNY4 1162 aaKnown RBP15.11■□□□□ 0.01
CLK3-222ENST00000568232 SGPL1O95470 568 aa15.1■□□□□ 0.01
CLK3-222ENST00000568232 CSF1RP07333 972 aa15.1■□□□□ 0.01
CLK3-222ENST00000568232 HOXD10P28358 340 aa15.1■□□□□ 0.01
CLK3-222ENST00000568232 PRKCZQ05513 592 aa15.1■□□□□ 0.01
CLK3-222ENST00000568232 SNAPC2Q13487 334 aa15.1■□□□□ 0.01
CLK3-222ENST00000568232 ERO1BQ86YB8 467 aa15.1■□□□□ 0.01
CLK3-222ENST00000568232 SP7Q8TDD2 431 aaPredicted RBP15.1■□□□□ 0.01
CLK3-222ENST00000568232 PRKAR2AP13861 404 aaKnown RBP15.09■□□□□ 0.01
CLK3-222ENST00000568232 CACNB3P54284 484 aa15.09■□□□□ 0.01
CLK3-222ENST00000568232 UBXN2AP68543 259 aa15.09■□□□□ 0.01
CLK3-222ENST00000568232 EVX2Q03828 476 aa15.09■□□□□ 0.01
CLK3-222ENST00000568232 NEXNQ0ZGT2 675 aa15.09■□□□□ 0.01
CLK3-222ENST00000568232 WRNIP1Q96S55 665 aa15.09■□□□□ 0.01
CLK3-222ENST00000568232 SERPINA10Q9UK55 444 aa15.09■□□□□ 0.01
CLK3-222ENST00000568232 GABRQQ9UN88 632 aa15.09■□□□□ 0.01
CLK3-222ENST00000568232 VCANP13611 3396 aa15.09■□□□□ 0.01
CLK3-222ENST00000568232 MYH3P11055 1940 aa15.09■□□□□ 0.01
CLK3-222ENST00000568232 PDHXO00330 501 aa15.08■□□□□ 0
CLK3-222ENST00000568232 TNNI2P48788 182 aa15.08■□□□□ 0
CLK3-222ENST00000568232 CASP7P55210 303 aa15.08■□□□□ 0
CLK3-222ENST00000568232 PPIL2Q13356 520 aa15.08■□□□□ 0
CLK3-222ENST00000568232 MFSD14BQ5SR56 506 aa15.08■□□□□ 0
CLK3-222ENST00000568232 CCDC30Q5VVM6 783 aa15.08■□□□□ 0
CLK3-222ENST00000568232 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.08■□□□□ 0
CLK3-222ENST00000568232 PLA2G12BQ9BX93 195 aa15.08■□□□□ 0
CLK3-222ENST00000568232 STXBP5LQ9Y2K9 1186 aa15.08■□□□□ 0
CLK3-222ENST00000568232 ADGRA2Q96PE1 1338 aa15.08■□□□□ 0
CLK3-222ENST00000568232 ANKRD18BA2A2Z9 1011 aa15.07■□□□□ 0
CLK3-222ENST00000568232 PLIN1O60240 522 aa15.07■□□□□ 0
CLK3-222ENST00000568232 TFRCP02786 760 aaKnown RBP15.07■□□□□ 0
CLK3-222ENST00000568232 CRKP46108 304 aa15.07■□□□□ 0
CLK3-222ENST00000568232 GCKRQ14397 625 aa15.07■□□□□ 0
CLK3-222ENST00000568232 GRIK5Q16478 980 aa15.07■□□□□ 0
CLK3-222ENST00000568232 TSPYL6Q8N831 410 aa15.07■□□□□ 0
CLK3-222ENST00000568232 GDF15Q99988 308 aa15.07■□□□□ 0
CLK3-222ENST00000568232 MTMR10Q9NXD2 777 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms