RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 INHBEP58166 350 aa20.13■□□□□ 0.81
CLN3-229ENST00000567963 PUM3Q15397 648 aaKnown RBP20.13■□□□□ 0.81
CLN3-229ENST00000567963 NOM1Q5C9Z4 860 aaKnown RBP20.13■□□□□ 0.81
CLN3-229ENST00000567963 CFHR5Q9BXR6 569 aa20.13■□□□□ 0.81
CLN3-229ENST00000567963 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.13■□□□□ 0.81
CLN3-229ENST00000567963 NOB1Q9ULX3 412 aaKnown RBP20.13■□□□□ 0.81
CLN3-229ENST00000567963 MANSC4A6NHS7 340 aaPredicted RBP20.12■□□□□ 0.81
CLN3-229ENST00000567963 GPR25O00155 361 aa20.12■□□□□ 0.81
CLN3-229ENST00000567963 EYA2O00167 538 aa20.12■□□□□ 0.81
CLN3-229ENST00000567963 IFIT1P09914 478 aaKnown RBP20.12■□□□□ 0.81
CLN3-229ENST00000567963 HDLBPQ00341 1268 aaKnown RBP20.12■□□□□ 0.81
CLN3-229ENST00000567963 KIF16BQ96L93 1317 aa20.12■□□□□ 0.81
CLN3-229ENST00000567963 WNK4Q96J92 1243 aa20.11■□□□□ 0.81
CLN3-229ENST00000567963 MRIQ9BWK5 157 aa20.11■□□□□ 0.81
CLN3-229ENST00000567963 TCP10L2B9ZVM9 353 aa20.11■□□□□ 0.81
CLN3-229ENST00000567963 ALDH1A1P00352 501 aa20.11■□□□□ 0.81
CLN3-229ENST00000567963 UBTFL1P0CB47 393 aaPredicted RBP20.11■□□□□ 0.81
CLN3-229ENST00000567963 ATG9AQ7Z3C6 839 aa20.11■□□□□ 0.81
CLN3-229ENST00000567963 ANKRD13AQ8IZ07 590 aa20.11■□□□□ 0.81
CLN3-229ENST00000567963 TEPSINQ96N21 525 aa20.11■□□□□ 0.81
CLN3-229ENST00000567963 R3HDMLQ9H3Y0 253 aa20.11■□□□□ 0.81
CLN3-229ENST00000567963 PKN2Q16513 984 aaKnown RBP20.1■□□□□ 0.81
CLN3-229ENST00000567963 IFNL1Q8IU54 200 aa20.1■□□□□ 0.81
CLN3-229ENST00000567963 LPIN2Q92539 896 aa20.1■□□□□ 0.81
CLN3-229ENST00000567963 TEKT1Q969V4 418 aa20.1■□□□□ 0.81
CLN3-229ENST00000567963 API5Q9BZZ5 524 aaKnown RBP20.1■□□□□ 0.81
CLN3-229ENST00000567963 LAMB1P07942 1786 aa20.09■□□□□ 0.81
CLN3-229ENST00000567963 TNNI2P48788 182 aa20.09■□□□□ 0.81
CLN3-229ENST00000567963 TMEM39BQ9GZU3 492 aa20.09■□□□□ 0.81
CLN3-229ENST00000567963 FBXO3Q9UK99 471 aa20.09■□□□□ 0.81
CLN3-229ENST00000567963 SUGT1Q9Y2Z0 365 aa20.09■□□□□ 0.81
CLN3-229ENST00000567963 SLC5A1P13866 664 aa20.08■□□□□ 0.81
CLN3-229ENST00000567963 GJA5P36382 358 aa20.08■□□□□ 0.81
CLN3-229ENST00000567963 CDAN1Q8IWY9 1227 aa20.08■□□□□ 0.81
CLN3-229ENST00000567963 ZDHHC15Q96MV8 337 aa20.08■□□□□ 0.81
CLN3-229ENST00000567963 FKTNO75072 461 aa20.07■□□□□ 0.8
CLN3-229ENST00000567963 CIAO1O76071 339 aa20.07■□□□□ 0.8
CLN3-229ENST00000567963 RARSP54136 660 aaKnown RBP20.07■□□□□ 0.8
CLN3-229ENST00000567963 SIL1Q9H173 461 aa20.07■□□□□ 0.8
CLN3-229ENST00000567963 HDAC5Q9UQL6 1122 aa20.07■□□□□ 0.8
CLN3-229ENST00000567963 IGF2BP3O00425 579 aaKnown RBP eCLIP20.06■□□□□ 0.8
CLN3-229ENST00000567963 APOBEC3HQ6NTF7 200 aaKnown RBP20.06■□□□□ 0.8
CLN3-229ENST00000567963 HPS5Q9UPZ3 1129 aa20.06■□□□□ 0.8
CLN3-229ENST00000567963 LRRFIP2Q9Y608 721 aaKnown RBP20.06■□□□□ 0.8
CLN3-229ENST00000567963 MAST3O60307 1309 aa20.06■□□□□ 0.8
CLN3-229ENST00000567963 OTOFQ9HC10 1997 aa20.06■□□□□ 0.8
CLN3-229ENST00000567963 CACNB3P54284 484 aa20.05■□□□□ 0.8
CLN3-229ENST00000567963 HHIPL2Q6UWX4 724 aa20.05■□□□□ 0.8
CLN3-229ENST00000567963 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.05■□□□□ 0.8
CLN3-229ENST00000567963 WDR66Q8TBY9 1149 aa20.05■□□□□ 0.8
CLN3-229ENST00000567963 ELP3Q9H9T3 547 aa20.05■□□□□ 0.8
CLN3-229ENST00000567963 CEP126Q9P2H0 1117 aa20.05■□□□□ 0.8
CLN3-229ENST00000567963 TNRC18O15417 2968 aaPredicted RBP20.05■□□□□ 0.8
CLN3-229ENST00000567963 ARHGAP45Q92619 1136 aa20.05■□□□□ 0.8
CLN3-229ENST00000567963 OPTNQ96CV9 577 aa20.05■□□□□ 0.8
CLN3-229ENST00000567963 MYH13Q9UKX3 1938 aa20.04■□□□□ 0.8
CLN3-229ENST00000567963 TESPA1A2RU30 521 aaPredicted RBP20.04■□□□□ 0.8
CLN3-229ENST00000567963 SOX10P56693 466 aa20.04■□□□□ 0.8
CLN3-229ENST00000567963 MAP3K9P80192 1104 aa20.04■□□□□ 0.8
CLN3-229ENST00000567963 ATP2B3Q16720 1220 aa20.04■□□□□ 0.8
CLN3-229ENST00000567963 OTUD7BQ6GQQ9 843 aa20.04■□□□□ 0.8
CLN3-229ENST00000567963 FAM83AQ86UY5 434 aa20.04■□□□□ 0.8
CLN3-229ENST00000567963 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.04■□□□□ 0.8
CLN3-229ENST00000567963 MEIS3Q99687 375 aa20.04■□□□□ 0.8
CLN3-229ENST00000567963 PTPN18Q99952 460 aa20.04■□□□□ 0.8
CLN3-229ENST00000567963 TMOD2Q9NZR1 351 aa20.04■□□□□ 0.8
CLN3-229ENST00000567963 IL15P40933 162 aaPredicted RBP20.03■□□□□ 0.8
CLN3-229ENST00000567963 FKBP1CQ5VVH2 108 aa20.03■□□□□ 0.8
CLN3-229ENST00000567963 INTS3Q68E01 1043 aaKnown RBP20.03■□□□□ 0.8
CLN3-229ENST00000567963 PA2G4Q9UQ80 394 aaKnown RBP20.03■□□□□ 0.8
CLN3-229ENST00000567963 VGLL4Q14135 290 aa20.02■□□□□ 0.8
CLN3-229ENST00000567963 FBXO46Q6PJ61 603 aaPredicted RBP20.02■□□□□ 0.8
CLN3-229ENST00000567963 MS4A4AQ96JQ5 239 aa20.02■□□□□ 0.8
CLN3-229ENST00000567963 COPRSQ9NQ92 184 aa20.02■□□□□ 0.8
CLN3-229ENST00000567963 CNKSR2Q8WXI2 1034 aa20.01■□□□□ 0.79
CLN3-229ENST00000567963 GNL3LQ9NVN8 582 aaKnown RBP20.01■□□□□ 0.79
CLN3-229ENST00000567963 CSADQ9Y600 493 aa20■□□□□ 0.79
CLN3-229ENST00000567963 GNAI3P08754 354 aa19.99■□□□□ 0.79
CLN3-229ENST00000567963 PRDX5P30044 214 aa19.99■□□□□ 0.79
CLN3-229ENST00000567963 CRHR2Q13324 411 aa19.99■□□□□ 0.79
CLN3-229ENST00000567963 PHKA1P46020 1223 aa19.99■□□□□ 0.79
CLN3-229ENST00000567963 GTF2A2P52657 109 aa19.99■□□□□ 0.79
CLN3-229ENST00000567963 HOOK2Q96ED9 719 aa19.99■□□□□ 0.79
CLN3-229ENST00000567963 DENND2AQ9ULE3 1009 aa19.99■□□□□ 0.79
CLN3-229ENST00000567963 DAGLAQ9Y4D2 1042 aa19.99■□□□□ 0.79
CLN3-229ENST00000567963 SALL1Q9NSC2 1324 aa19.98■□□□□ 0.79
CLN3-229ENST00000567963 SEMA3EO15041 775 aa19.98■□□□□ 0.79
CLN3-229ENST00000567963 ZBTB22O15209 634 aa19.98■□□□□ 0.79
CLN3-229ENST00000567963 LDHBP07195 334 aaKnown RBP19.98■□□□□ 0.79
CLN3-229ENST00000567963 DIXDC1Q155Q3 683 aa19.98■□□□□ 0.79
CLN3-229ENST00000567963 OTUD5Q96G74 571 aa19.98■□□□□ 0.79
CLN3-229ENST00000567963 TRIM17Q9Y577 477 aa19.98■□□□□ 0.79
CLN3-229ENST00000567963 HTTP42858 3142 aa19.98■□□□□ 0.79
CLN3-229ENST00000567963 CENPFP49454 3210 aa19.97■□□□□ 0.79
CLN3-229ENST00000567963 IPO8O15397 1037 aaKnown RBP19.97■□□□□ 0.79
CLN3-229ENST00000567963 SRGAP3O43295 1099 aa19.97■□□□□ 0.79
CLN3-229ENST00000567963 ADORA1P30542 326 aa19.97■□□□□ 0.79
CLN3-229ENST00000567963 TIMM10P62072 90 aa19.97■□□□□ 0.79
CLN3-229ENST00000567963 MTX1Q13505 466 aa19.97■□□□□ 0.79
CLN3-229ENST00000567963 CCDC102BQ68D86 513 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms