RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 RASA3Q14644 834 aa14.27□□□□□ -0.13
CLN3-226ENST00000567160 CFAP100Q494V2 611 aa14.27□□□□□ -0.13
CLN3-226ENST00000567160 G2E3Q7L622 706 aa14.27□□□□□ -0.13
CLN3-226ENST00000567160 HELBQ8NG08 1087 aaPredicted RBP14.27□□□□□ -0.13
CLN3-226ENST00000567160 PHAXQ9H814 394 aaKnown RBP14.27□□□□□ -0.13
CLN3-226ENST00000567160 CSADQ9Y600 493 aa14.27□□□□□ -0.13
CLN3-226ENST00000567160 LAMA3Q16787 3333 aa14.26□□□□□ -0.13
CLN3-226ENST00000567160 MTFR1Q15390 333 aa14.26□□□□□ -0.13
CLN3-226ENST00000567160 GPR153Q6NV75 609 aa14.26□□□□□ -0.13
CLN3-226ENST00000567160 UBE2Q1Q7Z7E8 422 aa14.26□□□□□ -0.13
CLN3-226ENST00000567160 FAM43AQ8N2R8 423 aa14.26□□□□□ -0.13
CLN3-226ENST00000567160 RAET1EQ8TD07 263 aa14.26□□□□□ -0.13
CLN3-226ENST00000567160 JARID2Q92833 1246 aaPredicted RBP14.26□□□□□ -0.13
CLN3-226ENST00000567160 ARHGAP39Q9C0H5 1083 aa14.26□□□□□ -0.13
CLN3-226ENST00000567160 ZSWIM8A7E2V4 1837 aa14.26□□□□□ -0.13
CLN3-226ENST00000567160 SOX1O00570 391 aaPredicted RBP14.25□□□□□ -0.13
CLN3-226ENST00000567160 EVI5O60447 810 aa14.25□□□□□ -0.13
CLN3-226ENST00000567160 DDX58O95786 925 aaKnown RBP14.25□□□□□ -0.13
CLN3-226ENST00000567160 CETPP11597 493 aa14.25□□□□□ -0.13
CLN3-226ENST00000567160 GRK4P32298 578 aa14.25□□□□□ -0.13
CLN3-226ENST00000567160 RBM5P52756 815 aaKnown RBP eCLIP14.25□□□□□ -0.13
CLN3-226ENST00000567160 TTLL11Q8NHH1 800 aa14.25□□□□□ -0.13
CLN3-226ENST00000567160 FRAT1Q92837 279 aaPredicted RBP14.25□□□□□ -0.13
CLN3-226ENST00000567160 LRCH3Q96II8 777 aa14.25□□□□□ -0.13
CLN3-226ENST00000567160 PRMT6Q96LA8 375 aaPredicted RBP14.25□□□□□ -0.13
CLN3-226ENST00000567160 GREM2Q9H772 168 aa14.25□□□□□ -0.13
CLN3-226ENST00000567160 CD209Q9NNX6 404 aa14.25□□□□□ -0.13
CLN3-226ENST00000567160 F8W031 263 aaPredicted RBP14.24□□□□□ -0.13
CLN3-226ENST00000567160 FARP2O94887 1054 aaPredicted RBP14.24□□□□□ -0.13
CLN3-226ENST00000567160 CCL5P13501 91 aa14.24□□□□□ -0.13
CLN3-226ENST00000567160 FKBP1AP62942 108 aaKnown RBP14.24□□□□□ -0.13
CLN3-226ENST00000567160 UBXN2AP68543 259 aa14.24□□□□□ -0.13
CLN3-226ENST00000567160 MAP3K9P80192 1104 aa14.24□□□□□ -0.13
CLN3-226ENST00000567160 FLIIQ13045 1269 aa14.24□□□□□ -0.13
CLN3-226ENST00000567160 VGLL4Q14135 290 aa14.24□□□□□ -0.13
CLN3-226ENST00000567160 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.24□□□□□ -0.13
CLN3-226ENST00000567160 TRIM47Q96LD4 638 aa14.24□□□□□ -0.13
CLN3-226ENST00000567160 MPHOSPH8Q99549 860 aa14.24□□□□□ -0.13
CLN3-226ENST00000567160 METTL22Q9BUU2 404 aaPredicted RBP14.24□□□□□ -0.13
CLN3-226ENST00000567160 RNF208Q9H0X6 261 aa14.24□□□□□ -0.13
CLN3-226ENST00000567160 BIN2Q9UBW5 565 aaPredicted RBP14.24□□□□□ -0.13
CLN3-226ENST00000567160 SRRDQ9UH36 339 aa14.24□□□□□ -0.13
CLN3-226ENST00000567160 NOB1Q9ULX3 412 aaKnown RBP14.24□□□□□ -0.13
CLN3-226ENST00000567160 CAPN2P17655 700 aa14.23□□□□□ -0.13
CLN3-226ENST00000567160 KLRK1P26718 216 aa14.23□□□□□ -0.13
CLN3-226ENST00000567160 FKBP5Q13451 457 aaPredicted RBP14.23□□□□□ -0.13
CLN3-226ENST00000567160 CERS5Q8N5B7 392 aa14.23□□□□□ -0.13
CLN3-226ENST00000567160 CNKSR2Q8WXI2 1034 aa14.23□□□□□ -0.13
CLN3-226ENST00000567160 STXBP5LQ9Y2K9 1186 aa14.23□□□□□ -0.13
CLN3-226ENST00000567160 RIPOR2Q9Y4F9 1068 aa14.23□□□□□ -0.13
CLN3-226ENST00000567160 PCDHAC2Q9Y5I4 1007 aa14.23□□□□□ -0.13
CLN3-226ENST00000567160 KIF16BQ96L93 1317 aa14.22□□□□□ -0.13
CLN3-226ENST00000567160 PSMC4P43686 418 aa14.22□□□□□ -0.13
CLN3-226ENST00000567160 TNNI2P48788 182 aa14.22□□□□□ -0.13
CLN3-226ENST00000567160 SNAPC2Q13487 334 aa14.22□□□□□ -0.13
CLN3-226ENST00000567160 ZNF804AQ7Z570 1209 aa14.22□□□□□ -0.13
CLN3-226ENST00000567160 DEFB123Q8N688 67 aa14.22□□□□□ -0.13
CLN3-226ENST00000567160 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.22□□□□□ -0.13
CLN3-226ENST00000567160 SUPT16HQ9Y5B9 1047 aaKnown RBP14.22□□□□□ -0.13
CLN3-226ENST00000567160 SPDYE5A6NIY4 337 aa14.21□□□□□ -0.13
CLN3-226ENST00000567160 BTBD19C9JJ37 291 aa14.21□□□□□ -0.13
CLN3-226ENST00000567160 PLIN1O60240 522 aa14.21□□□□□ -0.13
CLN3-226ENST00000567160 FMNL1O95466 1100 aaPredicted RBP14.21□□□□□ -0.13
CLN3-226ENST00000567160 SPDYE2Q495Y8 402 aa14.21□□□□□ -0.13
CLN3-226ENST00000567160 U2AF1L4Q8WU68 220 aaKnown RBP14.21□□□□□ -0.13
CLN3-226ENST00000567160 STAP2Q9UGK3 403 aa14.21□□□□□ -0.13
CLN3-226ENST00000567160 ARAP2Q8WZ64 1704 aa14.21□□□□□ -0.14
CLN3-226ENST00000567160 MYPNQ86TC9 1320 aa14.2□□□□□ -0.14
CLN3-226ENST00000567160 OSBPP22059 807 aa14.2□□□□□ -0.14
CLN3-226ENST00000567160 NEXNQ0ZGT2 675 aa14.2□□□□□ -0.14
CLN3-226ENST00000567160 ZKSCAN2Q63HK3 967 aa14.2□□□□□ -0.14
CLN3-226ENST00000567160 ERO1BQ86YB8 467 aa14.2□□□□□ -0.14
CLN3-226ENST00000567160 SLAIN1Q8ND83 568 aa14.2□□□□□ -0.14
CLN3-226ENST00000567160 ZNF70Q9UC06 446 aaPredicted RBP14.2□□□□□ -0.14
CLN3-226ENST00000567160 TNNQ9UQP3 1299 aa14.2□□□□□ -0.14
CLN3-226ENST00000567160 PTPRCP08575 1304 aa14.19□□□□□ -0.14
CLN3-226ENST00000567160 PI4KAP2A4QPH2 592 aa14.19□□□□□ -0.14
CLN3-226ENST00000567160 F6X3S4 739 aa14.19□□□□□ -0.14
CLN3-226ENST00000567160 IPO8O15397 1037 aaKnown RBP14.19□□□□□ -0.14
CLN3-226ENST00000567160 ECM2O94769 699 aaPredicted RBP14.19□□□□□ -0.14
CLN3-226ENST00000567160 IL1R1P14778 569 aa14.19□□□□□ -0.14
CLN3-226ENST00000567160 ITGA6P23229 1130 aa14.19□□□□□ -0.14
CLN3-226ENST00000567160 RRP1P56182 461 aaKnown RBP14.19□□□□□ -0.14
CLN3-226ENST00000567160 CHRNDQ07001 517 aa14.19□□□□□ -0.14
CLN3-226ENST00000567160 C17orf99Q6UX52 265 aa14.19□□□□□ -0.14
CLN3-226ENST00000567160 C15orf52Q6ZUT6 534 aaKnown RBP14.19□□□□□ -0.14
CLN3-226ENST00000567160 PI4KAP1Q8N8J0 262 aa14.19□□□□□ -0.14
CLN3-226ENST00000567160 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.19□□□□□ -0.14
CLN3-226ENST00000567160 TEPSINQ96N21 525 aa14.19□□□□□ -0.14
CLN3-226ENST00000567160 COL25A1Q9BXS0 654 aaPredicted RBP14.19□□□□□ -0.14
CLN3-226ENST00000567160 SERPINA10Q9UK55 444 aa14.19□□□□□ -0.14
CLN3-226ENST00000567160 MAP3K2Q9Y2U5 619 aa14.19□□□□□ -0.14
CLN3-226ENST00000567160 UNC80Q8N2C7 3258 aa14.19□□□□□ -0.14
CLN3-226ENST00000567160 SGPL1O95470 568 aa14.18□□□□□ -0.14
CLN3-226ENST00000567160 BMP8BP34820 402 aa14.18□□□□□ -0.14
CLN3-226ENST00000567160 KSR2Q6VAB6 950 aa14.18□□□□□ -0.14
CLN3-226ENST00000567160 ATF7IPQ6VMQ6 1270 aa14.18□□□□□ -0.14
CLN3-226ENST00000567160 CLUAP1Q96AJ1 413 aa14.18□□□□□ -0.14
CLN3-226ENST00000567160 HOOK2Q96ED9 719 aa14.18□□□□□ -0.14
CLN3-226ENST00000567160 API5Q9BZZ5 524 aaKnown RBP14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms