RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 SLC5A1P13866 664 aa18.63■□□□□ 0.57
CLN3-222ENST00000566083 CRKP46108 304 aa18.63■□□□□ 0.57
CLN3-222ENST00000566083 OTUD7BQ6GQQ9 843 aa18.63■□□□□ 0.57
CLN3-222ENST00000566083 TEKT1Q969V4 418 aa18.63■□□□□ 0.57
CLN3-222ENST00000566083 PCDHAC2Q9Y5I4 1007 aa18.63■□□□□ 0.57
CLN3-222ENST00000566083 TBC1D8O95759 1140 aa18.62■□□□□ 0.57
CLN3-222ENST00000566083 MKRN3Q13064 507 aaKnown RBP18.62■□□□□ 0.57
CLN3-222ENST00000566083 NBPF12Q5TAG4 269 aaPredicted RBP18.62■□□□□ 0.57
CLN3-222ENST00000566083 LPIN2Q92539 896 aa18.62■□□□□ 0.57
CLN3-222ENST00000566083 TDRD3Q9H7E2 651 aaKnown RBP18.62■□□□□ 0.57
CLN3-222ENST00000566083 TMOD2Q9NZR1 351 aa18.62■□□□□ 0.57
CLN3-222ENST00000566083 GPR25O00155 361 aa18.61■□□□□ 0.57
CLN3-222ENST00000566083 CIAO1O76071 339 aa18.61■□□□□ 0.57
CLN3-222ENST00000566083 FGFR2P21802 821 aa18.61■□□□□ 0.57
CLN3-222ENST00000566083 CHAF1AQ13111 956 aaPredicted RBP18.61■□□□□ 0.57
CLN3-222ENST00000566083 WDR66Q8TBY9 1149 aa18.61■□□□□ 0.57
CLN3-222ENST00000566083 ZNF296Q8WUU4 475 aaPredicted RBP18.61■□□□□ 0.57
CLN3-222ENST00000566083 HOOK2Q96ED9 719 aa18.61■□□□□ 0.57
CLN3-222ENST00000566083 USP2O75604 605 aaPredicted RBP18.6■□□□□ 0.57
CLN3-222ENST00000566083 BCAMP50895 628 aa18.6■□□□□ 0.57
CLN3-222ENST00000566083 KLHDC4Q8TBB5 520 aa18.6■□□□□ 0.57
CLN3-222ENST00000566083 ARHGAP45Q92619 1136 aa18.6■□□□□ 0.57
CLN3-222ENST00000566083 WNK4Q96J92 1243 aa18.6■□□□□ 0.57
CLN3-222ENST00000566083 GNL3LQ9NVN8 582 aaKnown RBP18.6■□□□□ 0.57
CLN3-222ENST00000566083 NOB1Q9ULX3 412 aaKnown RBP18.6■□□□□ 0.57
CLN3-222ENST00000566083 IQSEC3Q9UPP2 1182 aaPredicted RBP18.6■□□□□ 0.57
CLN3-222ENST00000566083 FKTNO75072 461 aa18.59■□□□□ 0.57
CLN3-222ENST00000566083 RFX5P48382 616 aaPredicted RBP18.59■□□□□ 0.57
CLN3-222ENST00000566083 FKBP1CQ5VVH2 108 aa18.59■□□□□ 0.57
CLN3-222ENST00000566083 IFNL1Q8IU54 200 aa18.59■□□□□ 0.57
CLN3-222ENST00000566083 ZDHHC15Q96MV8 337 aa18.59■□□□□ 0.57
CLN3-222ENST00000566083 CEP126Q9P2H0 1117 aa18.59■□□□□ 0.57
CLN3-222ENST00000566083 SSC5DA1L4H1 1573 aa18.59■□□□□ 0.57
CLN3-222ENST00000566083 HHIPL2Q6UWX4 724 aa18.58■□□□□ 0.57
CLN3-222ENST00000566083 CLMNQ96JQ2 1002 aa18.58■□□□□ 0.57
CLN3-222ENST00000566083 ARAP2Q8WZ64 1704 aa18.58■□□□□ 0.57
CLN3-222ENST00000566083 IPO8O15397 1037 aaKnown RBP18.57■□□□□ 0.56
CLN3-222ENST00000566083 FAM83AQ86UY5 434 aa18.57■□□□□ 0.56
CLN3-222ENST00000566083 FZD1Q9UP38 647 aa18.57■□□□□ 0.56
CLN3-222ENST00000566083 TCP10L2B9ZVM9 353 aa18.57■□□□□ 0.56
CLN3-222ENST00000566083 IL15P40933 162 aaPredicted RBP18.57■□□□□ 0.56
CLN3-222ENST00000566083 TEPSINQ96N21 525 aa18.57■□□□□ 0.56
CLN3-222ENST00000566083 AOX1Q06278 1338 aa18.56■□□□□ 0.56
CLN3-222ENST00000566083 SEMA3EO15041 775 aa18.56■□□□□ 0.56
CLN3-222ENST00000566083 ZBTB22O15209 634 aa18.56■□□□□ 0.56
CLN3-222ENST00000566083 GNAI3P08754 354 aa18.56■□□□□ 0.56
CLN3-222ENST00000566083 RARSP54136 660 aaKnown RBP18.56■□□□□ 0.56
CLN3-222ENST00000566083 MAP3K9P80192 1104 aa18.56■□□□□ 0.56
CLN3-222ENST00000566083 ATG9AQ7Z3C6 839 aa18.56■□□□□ 0.56
CLN3-222ENST00000566083 CSADQ9Y600 493 aa18.56■□□□□ 0.56
CLN3-222ENST00000566083 TESPA1A2RU30 521 aaPredicted RBP18.55■□□□□ 0.56
CLN3-222ENST00000566083 ATP2B3Q16720 1220 aa18.55■□□□□ 0.56
CLN3-222ENST00000566083 TMEM39BQ9GZU3 492 aa18.55■□□□□ 0.56
CLN3-222ENST00000566083 INTS3Q68E01 1043 aaKnown RBP18.54■□□□□ 0.56
CLN3-222ENST00000566083 FBXO46Q6PJ61 603 aaPredicted RBP18.54■□□□□ 0.56
CLN3-222ENST00000566083 COPRSQ9NQ92 184 aa18.54■□□□□ 0.56
CLN3-222ENST00000566083 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.54■□□□□ 0.56
CLN3-222ENST00000566083 HPS5Q9UPZ3 1129 aa18.54■□□□□ 0.56
CLN3-222ENST00000566083 LRRFIP2Q9Y608 721 aaKnown RBP18.54■□□□□ 0.56
CLN3-222ENST00000566083 PDE4DIPQ5VU43 2346 aa18.54■□□□□ 0.56
CLN3-222ENST00000566083 WDHD1O75717 1129 aaPredicted RBP18.53■□□□□ 0.56
CLN3-222ENST00000566083 GTF2A2P52657 109 aa18.53■□□□□ 0.56
CLN3-222ENST00000566083 GRIK5Q16478 980 aa18.53■□□□□ 0.56
CLN3-222ENST00000566083 DCAF15Q66K64 600 aa18.53■□□□□ 0.56
CLN3-222ENST00000566083 APOBEC3HQ6NTF7 200 aaKnown RBP18.53■□□□□ 0.56
CLN3-222ENST00000566083 ZGPATQ8N5A5 531 aaKnown RBP18.53■□□□□ 0.56
CLN3-222ENST00000566083 OPTNQ96CV9 577 aa18.53■□□□□ 0.56
CLN3-222ENST00000566083 SIL1Q9H173 461 aa18.53■□□□□ 0.56
CLN3-222ENST00000566083 ELP3Q9H9T3 547 aa18.53■□□□□ 0.56
CLN3-222ENST00000566083 DENND2AQ9ULE3 1009 aa18.53■□□□□ 0.56
CLN3-222ENST00000566083 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.52■□□□□ 0.56
CLN3-222ENST00000566083 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.52■□□□□ 0.56
CLN3-222ENST00000566083 ERO1AQ96HE7 468 aa18.52■□□□□ 0.56
CLN3-222ENST00000566083 SALL1Q9NSC2 1324 aa18.52■□□□□ 0.56
CLN3-222ENST00000566083 RPAP1Q9BWH6 1393 aaPredicted RBP18.52■□□□□ 0.55
CLN3-222ENST00000566083 IGF2BP3O00425 579 aaKnown RBP eCLIP18.51■□□□□ 0.55
CLN3-222ENST00000566083 LDHBP07195 334 aaKnown RBP18.51■□□□□ 0.55
CLN3-222ENST00000566083 ARHGEF6Q15052 776 aa18.51■□□□□ 0.55
CLN3-222ENST00000566083 AKAP2Q9Y2D5 859 aa18.51■□□□□ 0.55
CLN3-222ENST00000566083 LAMB1P07942 1786 aa18.51■□□□□ 0.55
CLN3-222ENST00000566083 VGLL4Q14135 290 aa18.5■□□□□ 0.55
CLN3-222ENST00000566083 GJA5P36382 358 aa18.49■□□□□ 0.55
CLN3-222ENST00000566083 MTX1Q13505 466 aa18.49■□□□□ 0.55
CLN3-222ENST00000566083 ERO1BQ86YB8 467 aa18.49■□□□□ 0.55
CLN3-222ENST00000566083 SLF2Q8IX21 1173 aa18.49■□□□□ 0.55
CLN3-222ENST00000566083 MS4A4AQ96JQ5 239 aa18.49■□□□□ 0.55
CLN3-222ENST00000566083 MEIS3Q99687 375 aa18.49■□□□□ 0.55
CLN3-222ENST00000566083 R3HDMLQ9H3Y0 253 aa18.49■□□□□ 0.55
CLN3-222ENST00000566083 SPDYE5A6NIY4 337 aa18.49■□□□□ 0.55
CLN3-222ENST00000566083 CACNB3P54284 484 aa18.49■□□□□ 0.55
CLN3-222ENST00000566083 CRHR2Q13324 411 aa18.49■□□□□ 0.55
CLN3-222ENST00000566083 FAM151AQ8WW52 585 aa18.49■□□□□ 0.55
CLN3-222ENST00000566083 WRNIP1Q96S55 665 aa18.49■□□□□ 0.55
CLN3-222ENST00000566083 ZNF341Q9BYN7 854 aa18.49■□□□□ 0.55
CLN3-222ENST00000566083 ZCCHC17Q9NP64 241 aaKnown RBP18.49■□□□□ 0.55
CLN3-222ENST00000566083 PDS5AQ29RF7 1337 aaKnown RBP18.49■□□□□ 0.55
CLN3-222ENST00000566083 MYH13Q9UKX3 1938 aa18.48■□□□□ 0.55
CLN3-222ENST00000566083 SRGAP3O43295 1099 aa18.48■□□□□ 0.55
CLN3-222ENST00000566083 CETPP11597 493 aa18.48■□□□□ 0.55
CLN3-222ENST00000566083 SOX10P56693 466 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms