RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 SLC10A3P09131 477 aa22.81■■□□□ 1.24
CLN3-221ENST00000566057 NF2P35240 595 aa22.81■■□□□ 1.24
CLN3-221ENST00000566057 PHKA1P46020 1223 aa22.81■■□□□ 1.24
CLN3-221ENST00000566057 PRKG1Q13976 671 aa22.81■■□□□ 1.24
CLN3-221ENST00000566057 TTLL12Q14166 644 aaPredicted RBP22.81■■□□□ 1.24
CLN3-221ENST00000566057 SPDYE2Q495Y8 402 aa22.81■■□□□ 1.24
CLN3-221ENST00000566057 BEGAINQ9BUH8 593 aa22.81■■□□□ 1.24
CLN3-221ENST00000566057 C1orf115Q9H7X2 142 aa22.81■■□□□ 1.24
CLN3-221ENST00000566057 PRDM10Q9NQV6 1147 aa22.81■■□□□ 1.24
CLN3-221ENST00000566057 ZNF70Q9UC06 446 aaPredicted RBP22.81■■□□□ 1.24
CLN3-221ENST00000566057 FZD1Q9UP38 647 aa22.81■■□□□ 1.24
CLN3-221ENST00000566057 KIF23Q02241 960 aaPredicted RBP22.8■■□□□ 1.24
CLN3-221ENST00000566057 RASAL3Q86YV0 1011 aa22.8■■□□□ 1.24
CLN3-221ENST00000566057 PANK1Q8TE04 598 aa22.8■■□□□ 1.24
CLN3-221ENST00000566057 SSC5DA1L4H1 1573 aa22.8■■□□□ 1.24
CLN3-221ENST00000566057 HDLBPQ00341 1268 aaKnown RBP22.79■■□□□ 1.24
CLN3-221ENST00000566057 WDR66Q8TBY9 1149 aa22.79■■□□□ 1.24
CLN3-221ENST00000566057 TSKSQ9UJT2 592 aa22.79■■□□□ 1.24
CLN3-221ENST00000566057 PPP2R3BQ9Y5P8 575 aa22.79■■□□□ 1.24
CLN3-221ENST00000566057 CASP8AP2Q9UKL3 1982 aa22.78■■□□□ 1.24
CLN3-221ENST00000566057 ATP8B2P98198 1209 aa22.78■■□□□ 1.24
CLN3-221ENST00000566057 RASA3Q14644 834 aa22.78■■□□□ 1.24
CLN3-221ENST00000566057 NBPF12Q5TAG4 269 aaPredicted RBP22.78■■□□□ 1.24
CLN3-221ENST00000566057 CCDC102BQ68D86 513 aa22.78■■□□□ 1.24
CLN3-221ENST00000566057 TNS4Q8IZW8 715 aa22.78■■□□□ 1.24
CLN3-221ENST00000566057 MRIQ9BWK5 157 aa22.78■■□□□ 1.24
CLN3-221ENST00000566057 GNL3LQ9NVN8 582 aaKnown RBP22.78■■□□□ 1.24
CLN3-221ENST00000566057 SUGT1Q9Y2Z0 365 aa22.78■■□□□ 1.24
CLN3-221ENST00000566057 A0A1B0GUL7 405 aa22.77■■□□□ 1.24
CLN3-221ENST00000566057 POLA2Q14181 598 aa22.77■■□□□ 1.24
CLN3-221ENST00000566057 TEKT1Q969V4 418 aa22.77■■□□□ 1.24
CLN3-221ENST00000566057 XAGE2Q96GT9 111 aa22.77■■□□□ 1.24
CLN3-221ENST00000566057 AKAP2Q9Y2D5 859 aa22.77■■□□□ 1.24
CLN3-221ENST00000566057 G3BP1Q13283 466 aaKnown RBP eCLIP22.76■■□□□ 1.23
CLN3-221ENST00000566057 ARMC9Q7Z3E5 817 aa22.76■■□□□ 1.23
CLN3-221ENST00000566057 SSH3Q8TE77 659 aa22.76■■□□□ 1.23
CLN3-221ENST00000566057 ZDHHC15Q96MV8 337 aa22.76■■□□□ 1.23
CLN3-221ENST00000566057 ANGEL1Q9UNK9 670 aaKnown RBP22.76■■□□□ 1.23
CLN3-221ENST00000566057 MYH2Q9UKX2 1941 aa22.76■■□□□ 1.23
CLN3-221ENST00000566057 TCP10L2B9ZVM9 353 aa22.75■■□□□ 1.23
CLN3-221ENST00000566057 SEMA3EO15041 775 aa22.75■■□□□ 1.23
CLN3-221ENST00000566057 LDLRAD1Q5T700 205 aa22.75■■□□□ 1.23
CLN3-221ENST00000566057 APOBEC3HQ6NTF7 200 aaKnown RBP22.75■■□□□ 1.23
CLN3-221ENST00000566057 CSRNP1Q96S65 589 aa22.75■■□□□ 1.23
CLN3-221ENST00000566057 DENND2AQ9ULE3 1009 aa22.75■■□□□ 1.23
CLN3-221ENST00000566057 PRDX5P30044 214 aa22.74■■□□□ 1.23
CLN3-221ENST00000566057 CACNB3P54284 484 aa22.74■■□□□ 1.23
CLN3-221ENST00000566057 SUPT20HL1Q3ZLR7 823 aa22.74■■□□□ 1.23
CLN3-221ENST00000566057 HHIPL2Q6UWX4 724 aa22.74■■□□□ 1.23
CLN3-221ENST00000566057 CDAN1Q8IWY9 1227 aa22.74■■□□□ 1.23
CLN3-221ENST00000566057 TEPSINQ96N21 525 aa22.74■■□□□ 1.23
CLN3-221ENST00000566057 NEUROD6Q96NK8 337 aa22.74■■□□□ 1.23
CLN3-221ENST00000566057 MAST3O60307 1309 aa22.74■■□□□ 1.23
CLN3-221ENST00000566057 ZBTB22O15209 634 aa22.73■■□□□ 1.23
CLN3-221ENST00000566057 CA12O43570 354 aa22.73■■□□□ 1.23
CLN3-221ENST00000566057 TNFAIP1Q13829 316 aa22.73■■□□□ 1.23
CLN3-221ENST00000566057 RASGRF1Q13972 1273 aa22.73■■□□□ 1.23
CLN3-221ENST00000566057 RCAN3Q9UKA8 241 aa22.73■■□□□ 1.23
CLN3-221ENST00000566057 SALL1Q9NSC2 1324 aa22.73■■□□□ 1.23
CLN3-221ENST00000566057 OTOFQ9HC10 1997 aa22.72■■□□□ 1.23
CLN3-221ENST00000566057 DIXDC1Q155Q3 683 aa22.72■■□□□ 1.23
CLN3-221ENST00000566057 MAP3K11Q16584 847 aa22.72■■□□□ 1.23
CLN3-221ENST00000566057 TMEM39BQ9GZU3 492 aa22.72■■□□□ 1.23
CLN3-221ENST00000566057 PPP1R12BO60237 982 aaPredicted RBP22.71■■□□□ 1.23
CLN3-221ENST00000566057 USP2O75604 605 aaPredicted RBP22.71■■□□□ 1.23
CLN3-221ENST00000566057 LDHBP07195 334 aaKnown RBP22.71■■□□□ 1.23
CLN3-221ENST00000566057 MVPQ14764 893 aaKnown RBP22.71■■□□□ 1.23
CLN3-221ENST00000566057 AK9Q5TCS8 1911 aa22.7■■□□□ 1.23
CLN3-221ENST00000566057 SURF6O75683 361 aaKnown RBP22.7■■□□□ 1.22
CLN3-221ENST00000566057 MKRN3Q13064 507 aaKnown RBP22.7■■□□□ 1.22
CLN3-221ENST00000566057 CLMNQ96JQ2 1002 aa22.7■■□□□ 1.22
CLN3-221ENST00000566057 RNF186Q9NXI6 227 aa22.7■■□□□ 1.22
CLN3-221ENST00000566057 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.7■■□□□ 1.22
CLN3-221ENST00000566057 DAGLAQ9Y4D2 1042 aa22.7■■□□□ 1.22
CLN3-221ENST00000566057 TNNI2P48788 182 aa22.69■■□□□ 1.22
CLN3-221ENST00000566057 CEP85Q6P2H3 762 aa22.69■■□□□ 1.22
CLN3-221ENST00000566057 NOP58Q9Y2X3 529 aaKnown RBP22.69■■□□□ 1.22
CLN3-221ENST00000566057 PDS5AQ29RF7 1337 aaKnown RBP22.68■■□□□ 1.22
CLN3-221ENST00000566057 TRPA1O75762 1119 aa22.68■■□□□ 1.22
CLN3-221ENST00000566057 MS4A1P11836 297 aa22.68■■□□□ 1.22
CLN3-221ENST00000566057 OS9Q13438 667 aaPredicted RBP22.68■■□□□ 1.22
CLN3-221ENST00000566057 GORABQ5T7V8 394 aa22.68■■□□□ 1.22
CLN3-221ENST00000566057 SLC10A4Q96EP9 437 aa22.68■■□□□ 1.22
CLN3-221ENST00000566057 COG6Q9Y2V7 657 aa22.68■■□□□ 1.22
CLN3-221ENST00000566057 TNNI3KQ59H18 835 aa22.67■■□□□ 1.22
CLN3-221ENST00000566057 FKBP1CQ5VVH2 108 aa22.67■■□□□ 1.22
CLN3-221ENST00000566057 SPRYD7Q5W111 196 aa22.67■■□□□ 1.22
CLN3-221ENST00000566057 REM2Q8IYK8 340 aaPredicted RBP22.67■■□□□ 1.22
CLN3-221ENST00000566057 GPR108Q9NPR9 543 aa22.67■■□□□ 1.22
CLN3-221ENST00000566057 SAGE1Q9NXZ1 904 aa22.67■■□□□ 1.22
CLN3-221ENST00000566057 HMG20BQ9P0W2 317 aa22.67■■□□□ 1.22
CLN3-221ENST00000566057 ABCF2Q9UG63 623 aa22.67■■□□□ 1.22
CLN3-221ENST00000566057 FPGT-TNNI3KV9GXZ4 949 aa22.67■■□□□ 1.22
CLN3-221ENST00000566057 LAMB1P07942 1786 aa22.66■■□□□ 1.22
CLN3-221ENST00000566057 IREB2P48200 963 aaKnown RBP22.66■■□□□ 1.22
CLN3-221ENST00000566057 CDC42EP5Q6NZY7 148 aa22.66■■□□□ 1.22
CLN3-221ENST00000566057 PI16Q6UXB8 463 aa22.66■■□□□ 1.22
CLN3-221ENST00000566057 FAM83AQ86UY5 434 aa22.66■■□□□ 1.22
CLN3-221ENST00000566057 ZGPATQ8N5A5 531 aaKnown RBP22.66■■□□□ 1.22
CLN3-221ENST00000566057 TMOD2Q9NZR1 351 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms