RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 YTHDC1Q96MU7 727 aaKnown RBP16.92■□□□□ 0.3
VPS9D1-204ENST00000565023 DEFB129Q9H1M3 183 aa16.92■□□□□ 0.3
VPS9D1-204ENST00000565023 FBXO3Q9UK99 471 aa16.92■□□□□ 0.3
VPS9D1-204ENST00000565023 PNMA6EA0A0J9YXQ4 647 aa16.91■□□□□ 0.3
VPS9D1-204ENST00000565023 FAM155AB1AL88 458 aaPredicted RBP16.91■□□□□ 0.3
VPS9D1-204ENST00000565023 FKBP1BP68106 108 aa16.91■□□□□ 0.3
VPS9D1-204ENST00000565023 MKRN3Q13064 507 aaKnown RBP16.91■□□□□ 0.3
VPS9D1-204ENST00000565023 RASAL3Q86YV0 1011 aa16.91■□□□□ 0.3
VPS9D1-204ENST00000565023 TBC1D22AQ8WUA7 517 aa16.91■□□□□ 0.3
VPS9D1-204ENST00000565023 ANGEL1Q9UNK9 670 aaKnown RBP16.91■□□□□ 0.3
VPS9D1-204ENST00000565023 AKAP11Q9UKA4 1901 aa16.91■□□□□ 0.3
VPS9D1-204ENST00000565023 PDE4DIPQ5VU43 2346 aa16.91■□□□□ 0.3
VPS9D1-204ENST00000565023 TCP10L2B9ZVM9 353 aa16.9■□□□□ 0.3
VPS9D1-204ENST00000565023 SLC10A3P09131 477 aa16.9■□□□□ 0.3
VPS9D1-204ENST00000565023 RLBP1P12271 317 aa16.9■□□□□ 0.3
VPS9D1-204ENST00000565023 PHKA1P46020 1223 aa16.9■□□□□ 0.3
VPS9D1-204ENST00000565023 TFCP2Q12800 502 aa16.9■□□□□ 0.3
VPS9D1-204ENST00000565023 ZNF70Q9UC06 446 aaPredicted RBP16.9■□□□□ 0.3
VPS9D1-204ENST00000565023 SERPINA10Q9UK55 444 aa16.9■□□□□ 0.3
VPS9D1-204ENST00000565023 COL1A1P02452 1464 aaPredicted RBP16.89■□□□□ 0.29
VPS9D1-204ENST00000565023 RGS19P49795 217 aa16.89■□□□□ 0.29
VPS9D1-204ENST00000565023 TIMM10P62072 90 aa16.89■□□□□ 0.29
VPS9D1-204ENST00000565023 ARMC9Q7Z3E5 817 aa16.89■□□□□ 0.29
VPS9D1-204ENST00000565023 ABHD8Q96I13 439 aa16.89■□□□□ 0.29
VPS9D1-204ENST00000565023 GNL3LQ9NVN8 582 aaKnown RBP16.89■□□□□ 0.29
VPS9D1-204ENST00000565023 CASP8AP2Q9UKL3 1982 aa16.89■□□□□ 0.29
VPS9D1-204ENST00000565023 CACNB3P54284 484 aa16.88■□□□□ 0.29
VPS9D1-204ENST00000565023 G3BP1Q13283 466 aaKnown RBP eCLIP16.88■□□□□ 0.29
VPS9D1-204ENST00000565023 MTX1Q13505 466 aa16.88■□□□□ 0.29
VPS9D1-204ENST00000565023 RASA3Q14644 834 aa16.88■□□□□ 0.29
VPS9D1-204ENST00000565023 NBPF12Q5TAG4 269 aaPredicted RBP16.88■□□□□ 0.29
VPS9D1-204ENST00000565023 WDR66Q8TBY9 1149 aa16.88■□□□□ 0.29
VPS9D1-204ENST00000565023 PANK1Q8TE04 598 aa16.88■□□□□ 0.29
VPS9D1-204ENST00000565023 TEKT1Q969V4 418 aa16.88■□□□□ 0.29
VPS9D1-204ENST00000565023 NEUROD6Q96NK8 337 aa16.88■□□□□ 0.29
VPS9D1-204ENST00000565023 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.88■□□□□ 0.29
VPS9D1-204ENST00000565023 A0A1B0GUL7 405 aa16.87■□□□□ 0.29
VPS9D1-204ENST00000565023 OS9Q13438 667 aaPredicted RBP16.87■□□□□ 0.29
VPS9D1-204ENST00000565023 SPDYE2Q495Y8 402 aa16.87■□□□□ 0.29
VPS9D1-204ENST00000565023 RCAN3Q9UKA8 241 aa16.87■□□□□ 0.29
VPS9D1-204ENST00000565023 AK9Q5TCS8 1911 aa16.86■□□□□ 0.29
VPS9D1-204ENST00000565023 SSC5DA1L4H1 1573 aa16.86■□□□□ 0.29
VPS9D1-204ENST00000565023 CCDC102BQ68D86 513 aa16.86■□□□□ 0.29
VPS9D1-204ENST00000565023 XAGE2Q96GT9 111 aa16.86■□□□□ 0.29
VPS9D1-204ENST00000565023 PPP2R3BQ9Y5P8 575 aa16.86■□□□□ 0.29
VPS9D1-204ENST00000565023 PRDX5P30044 214 aa16.85■□□□□ 0.29
VPS9D1-204ENST00000565023 TNFAIP1Q13829 316 aa16.85■□□□□ 0.29
VPS9D1-204ENST00000565023 DIXDC1Q155Q3 683 aa16.85■□□□□ 0.29
VPS9D1-204ENST00000565023 SUPT20HL1Q3ZLR7 823 aa16.85■□□□□ 0.29
VPS9D1-204ENST00000565023 GORABQ5T7V8 394 aa16.85■□□□□ 0.29
VPS9D1-204ENST00000565023 CDAN1Q8IWY9 1227 aa16.85■□□□□ 0.29
VPS9D1-204ENST00000565023 CSRNP1Q96S65 589 aa16.85■□□□□ 0.29
VPS9D1-204ENST00000565023 TMEM39BQ9GZU3 492 aa16.85■□□□□ 0.29
VPS9D1-204ENST00000565023 TMOD2Q9NZR1 351 aa16.85■□□□□ 0.29
VPS9D1-204ENST00000565023 DENND2AQ9ULE3 1009 aa16.85■□□□□ 0.29
VPS9D1-204ENST00000565023 AKAP2Q9Y2D5 859 aa16.85■□□□□ 0.29
VPS9D1-204ENST00000565023 MAST3O60307 1309 aa16.85■□□□□ 0.29
VPS9D1-204ENST00000565023 MYH2Q9UKX2 1941 aa16.84■□□□□ 0.29
VPS9D1-204ENST00000565023 PPP1R12BO60237 982 aaPredicted RBP16.84■□□□□ 0.29
VPS9D1-204ENST00000565023 TRPA1O75762 1119 aa16.84■□□□□ 0.29
VPS9D1-204ENST00000565023 LDHBP07195 334 aaKnown RBP16.84■□□□□ 0.29
VPS9D1-204ENST00000565023 TNNI2P48788 182 aa16.84■□□□□ 0.29
VPS9D1-204ENST00000565023 HDLBPQ00341 1268 aaKnown RBP16.84■□□□□ 0.29
VPS9D1-204ENST00000565023 MLLT1Q03111 559 aaPredicted RBP16.84■□□□□ 0.29
VPS9D1-204ENST00000565023 ABCF2Q9UG63 623 aa16.84■□□□□ 0.29
VPS9D1-204ENST00000565023 ZBTB7BO15156 539 aaPredicted RBP16.83■□□□□ 0.28
VPS9D1-204ENST00000565023 CA12O43570 354 aa16.83■□□□□ 0.28
VPS9D1-204ENST00000565023 SURF6O75683 361 aaKnown RBP16.83■□□□□ 0.28
VPS9D1-204ENST00000565023 ATP8B2P98198 1209 aa16.83■□□□□ 0.28
VPS9D1-204ENST00000565023 RASGRF1Q13972 1273 aa16.83■□□□□ 0.28
VPS9D1-204ENST00000565023 CLMNQ96JQ2 1002 aa16.83■□□□□ 0.28
VPS9D1-204ENST00000565023 RNF186Q9NXI6 227 aa16.83■□□□□ 0.28
VPS9D1-204ENST00000565023 SUGT1Q9Y2Z0 365 aa16.83■□□□□ 0.28
VPS9D1-204ENST00000565023 OTOFQ9HC10 1997 aa16.82■□□□□ 0.28
VPS9D1-204ENST00000565023 POLA2Q14181 598 aa16.82■□□□□ 0.28
VPS9D1-204ENST00000565023 MVPQ14764 893 aaKnown RBP16.82■□□□□ 0.28
VPS9D1-204ENST00000565023 APOBEC3HQ6NTF7 200 aaKnown RBP16.82■□□□□ 0.28
VPS9D1-204ENST00000565023 SLC10A4Q96EP9 437 aa16.82■□□□□ 0.28
VPS9D1-204ENST00000565023 ZDHHC15Q96MV8 337 aa16.82■□□□□ 0.28
VPS9D1-204ENST00000565023 SEMA3EO15041 775 aa16.81■□□□□ 0.28
VPS9D1-204ENST00000565023 USP2O75604 605 aaPredicted RBP16.81■□□□□ 0.28
VPS9D1-204ENST00000565023 IREB2P48200 963 aaKnown RBP16.81■□□□□ 0.28
VPS9D1-204ENST00000565023 LDLRAD1Q5T700 205 aa16.81■□□□□ 0.28
VPS9D1-204ENST00000565023 HHIPL2Q6UWX4 724 aa16.81■□□□□ 0.28
VPS9D1-204ENST00000565023 COG6Q9Y2V7 657 aa16.81■□□□□ 0.28
VPS9D1-204ENST00000565023 DAGLAQ9Y4D2 1042 aa16.81■□□□□ 0.28
VPS9D1-204ENST00000565023 PI16Q6UXB8 463 aa16.8■□□□□ 0.28
VPS9D1-204ENST00000565023 DZIP1Q86YF9 867 aaKnown RBP16.8■□□□□ 0.28
VPS9D1-204ENST00000565023 SSH3Q8TE77 659 aa16.8■□□□□ 0.28
VPS9D1-204ENST00000565023 TEPSINQ96N21 525 aa16.8■□□□□ 0.28
VPS9D1-204ENST00000565023 BCL11AQ9H165 835 aa16.8■□□□□ 0.28
VPS9D1-204ENST00000565023 MS4A1P11836 297 aa16.79■□□□□ 0.28
VPS9D1-204ENST00000565023 TCP10Q12799 353 aa16.79■□□□□ 0.28
VPS9D1-204ENST00000565023 MAP3K11Q16584 847 aa16.79■□□□□ 0.28
VPS9D1-204ENST00000565023 SPRYD7Q5W111 196 aa16.79■□□□□ 0.28
VPS9D1-204ENST00000565023 MRIQ9BWK5 157 aa16.79■□□□□ 0.28
VPS9D1-204ENST00000565023 ELP3Q9H9T3 547 aa16.79■□□□□ 0.28
VPS9D1-204ENST00000565023 SALL1Q9NSC2 1324 aa16.78■□□□□ 0.28
VPS9D1-204ENST00000565023 TBC1D8O95759 1140 aa16.78■□□□□ 0.28
VPS9D1-204ENST00000565023 TNNI3KQ59H18 835 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms