RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 USP17L8P0C7I0 530 aa8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 C7P10643 843 aa8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 SCNN1AP37088 669 aa8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 FOSBP53539 338 aa8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 FOXK1P85037 733 aa8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 TOB2Q14106 344 aaPredicted RBP8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 FAM43AQ8N2R8 423 aa8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 SEC62Q99442 399 aaKnown RBP8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 NDUFB9Q9Y6M9 179 aa8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 SPATA31A5Q5VU36 1347 aa8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 SPATA31A7Q8IWB4 1347 aa8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 TCHHQ07283 1943 aa8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 PARP10Q53GL7 1025 aa8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 FBXL16Q8N461 479 aa8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 MICAL1Q8TDZ2 1067 aa8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 ANP32BQ92688 251 aaKnown RBP8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 SMARCC1Q92922 1105 aaPredicted RBP8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 CCDC87Q9NVE4 849 aa8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 CTNNA3Q9UI47 895 aa8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 MTMR6Q9Y217 621 aa8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 PHLPP1O60346 1717 aa8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 NRAPQ86VF7 1730 aa8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 TOM1O60784 492 aa8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 PHF14O94880 888 aa8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 HSPD1P10809 573 aaKnown RBP8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 GPTP24298 496 aa8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 MARSP56192 900 aaKnown RBP8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 ST3GAL1Q11201 340 aa8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 TTF1Q15361 905 aaPredicted RBP8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 ATP2B3Q16720 1220 aa8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 METTL24Q5JXM2 366 aa8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 LARP1BQ659C4 914 aaKnown RBP8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 ZSCAN25Q6NSZ9 544 aa8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 LRSAM1Q6UWE0 723 aa8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 DHX32Q7L7V1 743 aaKnown RBP8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 USP48Q86UV5 1035 aa8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 PRR7Q8TB68 274 aa8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 AGXT2Q9BYV1 514 aa8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 NWD2Q9ULI1 1742 aa8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 CICQ96RK0 1608 aaPredicted RBP8.57□□□□□ -1.04
HERPUD1-209ENST00000564678 LOC102724428A0A0B4J2F2 783 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 LETM1O95202 739 aaPredicted RBP8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 PDE8BO95263 885 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 ADAMTS2O95450 1211 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 ATP6V1AP38606 617 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 SIK1P57059 783 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 UBE2HP62256 183 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 FKBP4Q02790 459 aaKnown RBP eCLIP8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 INTS5Q6P9B9 1019 aaKnown RBP8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 CCDC129Q6ZRS4 1044 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 PLPP6Q8IY26 295 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 VGLL2Q8N8G2 317 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 PANK2Q9BZ23 570 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 GREM2Q9H772 168 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 PRM3Q9NNZ6 103 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 CNNM1Q9NRU3 951 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 TMEM63CQ9P1W3 806 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 SLIT2O94813 1529 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 DOT1LQ8TEK3 1739 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 SOWAHDA6NJG2 315 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 NASPP49321 788 aaPredicted RBP8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 CHADLQ6NUI6 762 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 ZNF710Q8N1W2 664 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 MARCH10Q8NA82 808 aaPredicted RBP8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 APPBP2Q92624 585 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 LLPHQ9BRT6 129 aaKnown RBP8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.56□□□□□ -1.049e-7■□□□□ 9.1
HERPUD1-209ENST00000564678 HMX1Q9NP08 348 aaPredicted RBP8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 TAF6LQ9Y6J9 622 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 MAST3O60307 1309 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 MROH5Q6ZUA9 1318 aa8.56□□□□□ -1.04
HERPUD1-209ENST00000564678 UQCRFS1P1P0C7P4 283 aa8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 ADORA1P30542 326 aa8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 CRKLP46109 303 aaKnown RBP8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 EXOSC10Q01780 885 aaKnown RBP8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 CCDC173Q0VFZ6 552 aa8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 Q6ZUG5 572 aa8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 SYNE4Q8N205 404 aa8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 NECAB1Q8N987 351 aa8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 GTF3C6Q969F1 213 aa8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 OSBP2Q969R2 916 aa8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 UTP14AQ9BVJ6 771 aaKnown RBP8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 UBN2Q6ZU65 1347 aa8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 SOCS7O14512 581 aa8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 CHGBP05060 677 aa8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 PTGER2P43116 358 aa8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 C9orf131Q5VYM1 1079 aa8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 CLEC4GQ6UXB4 293 aa8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 METTL3Q86U44 580 aaKnown RBP8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 LPIN2Q92539 896 aa8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 CCDC85AQ96PX6 553 aaPredicted RBP8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 PPP1R9BQ96SB3 815 aa8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 NSFL1CQ9UNZ2 370 aaKnown RBP8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 KIF3AQ9Y496 699 aa8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 RREB1Q92766 1687 aa8.55□□□□□ -1.04
HERPUD1-209ENST00000564678 RIC1Q4ADV7 1423 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 LOC102724159A0A0B4J2E5 919 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 E7EWF7 191 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 PFKFB2O60825 505 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms