RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 MYH15Q9Y2K3 1946 aa15.31■□□□□ 0.04
CLN3-210ENST00000563874 GOLGA8FQ08AF8 430 aa15.31■□□□□ 0.04
CLN3-210ENST00000563874 GOLGA8DPQ0D2H9 430 aa15.31■□□□□ 0.04
CLN3-210ENST00000563874 TTC39AQ5SRH9 613 aa15.31■□□□□ 0.04
CLN3-210ENST00000563874 KRT222Q8N1A0 295 aa15.31■□□□□ 0.04
CLN3-210ENST00000563874 IPO4Q8TEX9 1081 aaKnown RBP15.31■□□□□ 0.04
CLN3-210ENST00000563874 IMPACTQ9P2X3 320 aa15.31■□□□□ 0.04
CLN3-210ENST00000563874 YEATS4O95619 227 aa15.31■□□□□ 0.04
CLN3-210ENST00000563874 AXDND1Q5T1B0 1012 aaPredicted RBP15.31■□□□□ 0.04
CLN3-210ENST00000563874 ANO1Q5XXA6 986 aa15.31■□□□□ 0.04
CLN3-210ENST00000563874 RALYLQ86SE5 291 aaKnown RBP15.31■□□□□ 0.04
CLN3-210ENST00000563874 HOMER1Q86YM7 354 aa15.31■□□□□ 0.04
CLN3-210ENST00000563874 ADAMTS7Q9UKP4 1686 aa15.3■□□□□ 0.04
CLN3-210ENST00000563874 NLRP12P59046 1061 aa15.3■□□□□ 0.04
CLN3-210ENST00000563874 NKX2-3Q8TAU0 364 aa15.3■□□□□ 0.04
CLN3-210ENST00000563874 GPR108Q9NPR9 543 aa15.3■□□□□ 0.04
CLN3-210ENST00000563874 SLFN14P0C7P3 912 aa15.3■□□□□ 0.04
CLN3-210ENST00000563874 ZAP70P43403 619 aa15.3■□□□□ 0.04
CLN3-210ENST00000563874 FANCCQ00597 558 aa15.3■□□□□ 0.04
CLN3-210ENST00000563874 KIF23Q02241 960 aaPredicted RBP15.3■□□□□ 0.04
CLN3-210ENST00000563874 HSP90AA4PQ58FG1 418 aa15.3■□□□□ 0.04
CLN3-210ENST00000563874 MB21D2Q8IYB1 491 aaPredicted RBP15.3■□□□□ 0.04
CLN3-210ENST00000563874 CCDC150Q8NCX0 1101 aa15.3■□□□□ 0.04
CLN3-210ENST00000563874 ZNF446Q9NWS9 450 aa15.3■□□□□ 0.04
CLN3-210ENST00000563874 DHX16O60231 1041 aaKnown RBP15.3■□□□□ 0.04
CLN3-210ENST00000563874 EVCP57679 992 aa15.3■□□□□ 0.04
CLN3-210ENST00000563874 CCDC158Q5M9N0 1113 aa15.3■□□□□ 0.04
CLN3-210ENST00000563874 DPF2Q92785 391 aa15.3■□□□□ 0.04
CLN3-210ENST00000563874 XAGE2Q96GT9 111 aa15.3■□□□□ 0.04
CLN3-210ENST00000563874 TPM4P67936 248 aa15.29■□□□□ 0.04
CLN3-210ENST00000563874 ABCC6O95255 1503 aa15.29■□□□□ 0.04
CLN3-210ENST00000563874 SCN11AQ9UI33 1791 aa15.29■□□□□ 0.04
CLN3-210ENST00000563874 ARFGEF2Q9Y6D5 1785 aa15.29■□□□□ 0.04
CLN3-210ENST00000563874 BRAPQ7Z569 592 aa15.29■□□□□ 0.04
CLN3-210ENST00000563874 PROSER2Q86WR7 435 aaPredicted RBP15.29■□□□□ 0.04
CLN3-210ENST00000563874 NCOA7Q8NI08 942 aa15.29■□□□□ 0.04
CLN3-210ENST00000563874 ADAMTSL3P82987 1691 aa15.29■□□□□ 0.04
CLN3-210ENST00000563874 ZNF213O14771 459 aa15.28■□□□□ 0.04
CLN3-210ENST00000563874 GABPB1Q06547 395 aaPredicted RBP15.28■□□□□ 0.04
CLN3-210ENST00000563874 PNOCQ13519 176 aa15.28■□□□□ 0.04
CLN3-210ENST00000563874 PHKBQ93100 1093 aa15.28■□□□□ 0.04
CLN3-210ENST00000563874 CLIC6Q96NY7 704 aa15.28■□□□□ 0.04
CLN3-210ENST00000563874 BPIFA3Q9BQP9 254 aa15.28■□□□□ 0.04
CLN3-210ENST00000563874 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.28■□□□□ 0.04
CLN3-210ENST00000563874 DNAI1Q9UI46 699 aa15.28■□□□□ 0.04
CLN3-210ENST00000563874 KIF2AO00139 706 aaPredicted RBP15.28■□□□□ 0.04
CLN3-210ENST00000563874 SYKP43405 635 aa15.28■□□□□ 0.04
CLN3-210ENST00000563874 CCDC57Q2TAC2 916 aa15.28■□□□□ 0.04
CLN3-210ENST00000563874 HSD3B7Q9H2F3 369 aa15.28■□□□□ 0.04
CLN3-210ENST00000563874 CAMTA1Q9Y6Y1 1673 aa15.28■□□□□ 0.04
CLN3-210ENST00000563874 GPAA1O43292 621 aa15.28■□□□□ 0.04
CLN3-210ENST00000563874 SERPINC1P01008 464 aa15.28■□□□□ 0.04
CLN3-210ENST00000563874 CMA1P23946 247 aa15.28■□□□□ 0.04
CLN3-210ENST00000563874 GNL2Q13823 731 aaKnown RBP15.28■□□□□ 0.04
CLN3-210ENST00000563874 CHMP4CQ96CF2 233 aa15.28■□□□□ 0.04
CLN3-210ENST00000563874 KCND1Q9NSA2 647 aa15.28■□□□□ 0.04
CLN3-210ENST00000563874 UBE2Q2LH0YL09 131 aa15.27■□□□□ 0.04
CLN3-210ENST00000563874 TERF2Q15554 542 aa15.27■□□□□ 0.04
CLN3-210ENST00000563874 CFAP100Q494V2 611 aa15.27■□□□□ 0.04
CLN3-210ENST00000563874 FAM177A1Q8N128 213 aaPredicted RBP15.27■□□□□ 0.04
CLN3-210ENST00000563874 ALG1Q9BT22 464 aa15.27■□□□□ 0.04
CLN3-210ENST00000563874 L2HGDHQ9H9P8 463 aa15.27■□□□□ 0.04
CLN3-210ENST00000563874 SENP2Q9HC62 589 aa15.27■□□□□ 0.04
CLN3-210ENST00000563874 UBASH3AP57075 661 aa15.27■□□□□ 0.03
CLN3-210ENST00000563874 VPS37DQ86XT2 251 aa15.27■□□□□ 0.03
CLN3-210ENST00000563874 PSDA5PKW4 1024 aaPredicted RBP15.26■□□□□ 0.03
CLN3-210ENST00000563874 TMEM232C9JQI7 657 aa15.26■□□□□ 0.03
CLN3-210ENST00000563874 SLC39A14Q15043 492 aa15.26■□□□□ 0.03
CLN3-210ENST00000563874 MICU3Q86XE3 530 aa15.26■□□□□ 0.03
CLN3-210ENST00000563874 FBXL16Q8N461 479 aa15.26■□□□□ 0.03
CLN3-210ENST00000563874 NRDCO43847 1150 aa15.26■□□□□ 0.03
CLN3-210ENST00000563874 APPP05067 770 aa15.26■□□□□ 0.03
CLN3-210ENST00000563874 ARHGAP29Q52LW3 1261 aa15.26■□□□□ 0.03
CLN3-210ENST00000563874 SPECC1Q5M775 1068 aa15.26■□□□□ 0.03
CLN3-210ENST00000563874 SHC4Q6S5L8 630 aa15.26■□□□□ 0.03
CLN3-210ENST00000563874 CCDC191Q8NCU4 936 aa15.26■□□□□ 0.03
CLN3-210ENST00000563874 APPBP2Q92624 585 aa15.26■□□□□ 0.03
CLN3-210ENST00000563874 FAM89AQ96GI7 184 aa15.26■□□□□ 0.03
CLN3-210ENST00000563874 MYL10Q9BUA6 226 aa15.26■□□□□ 0.03
CLN3-210ENST00000563874 UTP14AQ9BVJ6 771 aaKnown RBP15.26■□□□□ 0.03
CLN3-210ENST00000563874 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.26■□□□□ 0.03
CLN3-210ENST00000563874 TMX1Q9H3N1 280 aa15.25■□□□□ 0.03
CLN3-210ENST00000563874 ERICH4A6NGS2 130 aa15.25■□□□□ 0.03
CLN3-210ENST00000563874 CIAO1O76071 339 aa15.25■□□□□ 0.03
CLN3-210ENST00000563874 CCDC93Q567U6 631 aa15.25■□□□□ 0.03
CLN3-210ENST00000563874 KRT40Q6A162 431 aa15.25■□□□□ 0.03
CLN3-210ENST00000563874 CYB5R4Q7L1T6 521 aa15.25■□□□□ 0.03
CLN3-210ENST00000563874 NBPF3Q9H094 633 aa15.25■□□□□ 0.03
CLN3-210ENST00000563874 INCENPQ9NQS7 918 aa15.25■□□□□ 0.03
CLN3-210ENST00000563874 FANCGO15287 622 aa15.25■□□□□ 0.03
CLN3-210ENST00000563874 METAP2P50579 478 aaKnown RBP eCLIP15.25■□□□□ 0.03
CLN3-210ENST00000563874 TBC1D10CQ8IV04 446 aa15.25■□□□□ 0.03
CLN3-210ENST00000563874 STK11IPQ8N1F8 1099 aa15.25■□□□□ 0.03
CLN3-210ENST00000563874 SYNE4Q8N205 404 aa15.25■□□□□ 0.03
CLN3-210ENST00000563874 LMTK3Q96Q04 1460 aa15.24■□□□□ 0.03
CLN3-210ENST00000563874 CDC27P30260 824 aa15.24■□□□□ 0.03
CLN3-210ENST00000563874 CLCN6P51797 869 aa15.24■□□□□ 0.03
CLN3-210ENST00000563874 ETF1P62495 437 aaKnown RBP15.24■□□□□ 0.03
CLN3-210ENST00000563874 TRDNQ13061 729 aa15.24■□□□□ 0.03
CLN3-210ENST00000563874 LRRFIP1Q32MZ4 808 aaKnown RBP15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms