RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 CEP126Q9P2H0 1117 aa17.5■□□□□ 0.39
SMPD3-204ENST00000563396 CHAF1AQ13111 956 aaPredicted RBP17.49■□□□□ 0.39
SMPD3-204ENST00000563396 TNFAIP1Q13829 316 aa17.49■□□□□ 0.39
SMPD3-204ENST00000563396 MAP3K11Q16584 847 aa17.49■□□□□ 0.39
SMPD3-204ENST00000563396 DZIP1LQ8IYY4 767 aaKnown RBP17.49■□□□□ 0.39
SMPD3-204ENST00000563396 MRIQ9BWK5 157 aa17.49■□□□□ 0.39
SMPD3-204ENST00000563396 PDS5AQ29RF7 1337 aaKnown RBP17.48■□□□□ 0.39
SMPD3-204ENST00000563396 SALL1Q9NSC2 1324 aa17.48■□□□□ 0.39
SMPD3-204ENST00000563396 MAST2Q6P0Q8 1798 aa17.48■□□□□ 0.39
SMPD3-204ENST00000563396 SEMA3EO15041 775 aa17.48■□□□□ 0.39
SMPD3-204ENST00000563396 FRAT2O75474 233 aaPredicted RBP17.48■□□□□ 0.39
SMPD3-204ENST00000563396 RPAP1Q9BWH6 1393 aaPredicted RBP17.48■□□□□ 0.39
SMPD3-204ENST00000563396 RBM5P52756 815 aaKnown RBP eCLIP17.47■□□□□ 0.39
SMPD3-204ENST00000563396 KIF23Q02241 960 aaPredicted RBP17.47■□□□□ 0.39
SMPD3-204ENST00000563396 LDLRAD1Q5T700 205 aa17.47■□□□□ 0.39
SMPD3-204ENST00000563396 REM2Q8IYK8 340 aaPredicted RBP17.47■□□□□ 0.39
SMPD3-204ENST00000563396 PIAS4Q8N2W9 510 aaPredicted RBP17.47■□□□□ 0.39
SMPD3-204ENST00000563396 WDR66Q8TBY9 1149 aa17.47■□□□□ 0.39
SMPD3-204ENST00000563396 TEKT1Q969V4 418 aa17.47■□□□□ 0.39
SMPD3-204ENST00000563396 ZDHHC15Q96MV8 337 aa17.47■□□□□ 0.39
SMPD3-204ENST00000563396 VEZTQ9HBM0 779 aa17.47■□□□□ 0.39
SMPD3-204ENST00000563396 ZNF70Q9UC06 446 aaPredicted RBP17.47■□□□□ 0.39
SMPD3-204ENST00000563396 MYH2Q9UKX2 1941 aa17.47■□□□□ 0.39
SMPD3-204ENST00000563396 PNMA6EA0A0J9YXQ4 647 aa17.46■□□□□ 0.39
SMPD3-204ENST00000563396 UNCXA6NJT0 531 aa17.46■□□□□ 0.39
SMPD3-204ENST00000563396 UBE2Q2LH0YL09 131 aa17.46■□□□□ 0.39
SMPD3-204ENST00000563396 RLBP1P12271 317 aa17.46■□□□□ 0.39
SMPD3-204ENST00000563396 RASA3Q14644 834 aa17.46■□□□□ 0.39
SMPD3-204ENST00000563396 ARMC9Q7Z3E5 817 aa17.46■□□□□ 0.39
SMPD3-204ENST00000563396 TDRD3Q9H7E2 651 aaKnown RBP17.46■□□□□ 0.39
SMPD3-204ENST00000563396 CASP8AP2Q9UKL3 1982 aa17.46■□□□□ 0.39
SMPD3-204ENST00000563396 DOCK2Q92608 1830 aa17.45■□□□□ 0.38
SMPD3-204ENST00000563396 PHKA1P46020 1223 aa17.45■□□□□ 0.38
SMPD3-204ENST00000563396 TTLL12Q14166 644 aaPredicted RBP17.45■□□□□ 0.38
SMPD3-204ENST00000563396 HHIPL2Q6UWX4 724 aa17.45■□□□□ 0.38
SMPD3-204ENST00000563396 FTSJ3Q8IY81 847 aaKnown RBP17.45■□□□□ 0.38
SMPD3-204ENST00000563396 TEPSINQ96N21 525 aa17.45■□□□□ 0.38
SMPD3-204ENST00000563396 CSRNP1Q96S65 589 aa17.45■□□□□ 0.38
SMPD3-204ENST00000563396 GNL3LQ9NVN8 582 aaKnown RBP17.45■□□□□ 0.38
SMPD3-204ENST00000563396 A0A1B0GUL7 405 aa17.44■□□□□ 0.38
SMPD3-204ENST00000563396 ADORA1P30542 326 aa17.44■□□□□ 0.38
SMPD3-204ENST00000563396 POLA2Q14181 598 aa17.44■□□□□ 0.38
SMPD3-204ENST00000563396 SUPT20HL1Q3ZLR7 823 aa17.44■□□□□ 0.38
SMPD3-204ENST00000563396 FKBP1CQ5VVH2 108 aa17.44■□□□□ 0.38
SMPD3-204ENST00000563396 CCDC102BQ68D86 513 aa17.44■□□□□ 0.38
SMPD3-204ENST00000563396 TSKSQ9UJT2 592 aa17.44■□□□□ 0.38
SMPD3-204ENST00000563396 DENND2AQ9ULE3 1009 aa17.44■□□□□ 0.38
SMPD3-204ENST00000563396 ANGEL1Q9UNK9 670 aaKnown RBP17.44■□□□□ 0.38
SMPD3-204ENST00000563396 AKAP2Q9Y2D5 859 aa17.44■□□□□ 0.38
SMPD3-204ENST00000563396 PPP1R12BO60237 982 aaPredicted RBP17.43■□□□□ 0.38
SMPD3-204ENST00000563396 TFCP2Q12800 502 aa17.43■□□□□ 0.38
SMPD3-204ENST00000563396 NBPF12Q5TAG4 269 aaPredicted RBP17.43■□□□□ 0.38
SMPD3-204ENST00000563396 APOBEC3HQ6NTF7 200 aaKnown RBP17.43■□□□□ 0.38
SMPD3-204ENST00000563396 SSH3Q8TE77 659 aa17.43■□□□□ 0.38
SMPD3-204ENST00000563396 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.43■□□□□ 0.38
SMPD3-204ENST00000563396 RFX7Q2KHR2 1363 aa17.42■□□□□ 0.38
SMPD3-204ENST00000563396 PRDX5P30044 214 aa17.42■□□□□ 0.38
SMPD3-204ENST00000563396 TNNI2P48788 182 aa17.42■□□□□ 0.38
SMPD3-204ENST00000563396 RASGRF1Q13972 1273 aa17.42■□□□□ 0.38
SMPD3-204ENST00000563396 FAM83AQ86UY5 434 aa17.42■□□□□ 0.38
SMPD3-204ENST00000563396 ITPRIPQ8IWB1 547 aa17.42■□□□□ 0.38
SMPD3-204ENST00000563396 FZD1Q9UP38 647 aa17.42■□□□□ 0.38
SMPD3-204ENST00000563396 ZBTB7BO15156 539 aaPredicted RBP17.41■□□□□ 0.38
SMPD3-204ENST00000563396 PRKG1Q13976 671 aa17.41■□□□□ 0.38
SMPD3-204ENST00000563396 MVPQ14764 893 aaKnown RBP17.41■□□□□ 0.38
SMPD3-204ENST00000563396 CDAN1Q8IWY9 1227 aa17.41■□□□□ 0.38
SMPD3-204ENST00000563396 ZGPATQ8N5A5 531 aaKnown RBP17.41■□□□□ 0.38
SMPD3-204ENST00000563396 XAGE2Q96GT9 111 aa17.41■□□□□ 0.38
SMPD3-204ENST00000563396 RNF186Q9NXI6 227 aa17.41■□□□□ 0.38
SMPD3-204ENST00000563396 DAGLAQ9Y4D2 1042 aa17.41■□□□□ 0.38
SMPD3-204ENST00000563396 ZBTB48P10074 688 aaPredicted RBP17.4■□□□□ 0.38
SMPD3-204ENST00000563396 IREB2P48200 963 aaKnown RBP17.4■□□□□ 0.38
SMPD3-204ENST00000563396 TM4SF4P48230 202 aa17.4■□□□□ 0.38
SMPD3-204ENST00000563396 TIMM10P62072 90 aa17.4■□□□□ 0.38
SMPD3-204ENST00000563396 SPRYD7Q5W111 196 aa17.4■□□□□ 0.38
SMPD3-204ENST00000563396 TMEM39BQ9GZU3 492 aa17.4■□□□□ 0.38
SMPD3-204ENST00000563396 GAKO14976 1311 aa17.4■□□□□ 0.38
SMPD3-204ENST00000563396 TCP10L2B9ZVM9 353 aa17.39■□□□□ 0.37
SMPD3-204ENST00000563396 USP2O75604 605 aaPredicted RBP17.39■□□□□ 0.37
SMPD3-204ENST00000563396 LDHBP07195 334 aaKnown RBP17.39■□□□□ 0.37
SMPD3-204ENST00000563396 ATP8B2P98198 1209 aa17.39■□□□□ 0.37
SMPD3-204ENST00000563396 SREBF2Q12772 1141 aa17.39■□□□□ 0.37
SMPD3-204ENST00000563396 CFHR5Q9BXR6 569 aa17.39■□□□□ 0.37
SMPD3-204ENST00000563396 C1orf115Q9H7X2 142 aa17.39■□□□□ 0.37
SMPD3-204ENST00000563396 GPR108Q9NPR9 543 aa17.39■□□□□ 0.37
SMPD3-204ENST00000563396 TMOD2Q9NZR1 351 aa17.39■□□□□ 0.37
SMPD3-204ENST00000563396 ARID4AP29374 1257 aaPredicted RBP17.38■□□□□ 0.37
SMPD3-204ENST00000563396 CACNB3P54284 484 aa17.38■□□□□ 0.37
SMPD3-204ENST00000563396 DIXDC1Q155Q3 683 aa17.38■□□□□ 0.37
SMPD3-204ENST00000563396 ANKRD13AQ8IZ07 590 aa17.38■□□□□ 0.37
SMPD3-204ENST00000563396 WNK4Q96J92 1243 aa17.38■□□□□ 0.37
SMPD3-204ENST00000563396 CLMNQ96JQ2 1002 aa17.38■□□□□ 0.37
SMPD3-204ENST00000563396 NOP58Q9Y2X3 529 aaKnown RBP17.38■□□□□ 0.37
SMPD3-204ENST00000563396 FOCADQ5VW36 1801 aa17.37■□□□□ 0.37
SMPD3-204ENST00000563396 TRPA1O75762 1119 aa17.37■□□□□ 0.37
SMPD3-204ENST00000563396 G3BP1Q13283 466 aaKnown RBP eCLIP17.37■□□□□ 0.37
SMPD3-204ENST00000563396 NOM1Q5C9Z4 860 aaKnown RBP17.37■□□□□ 0.37
SMPD3-204ENST00000563396 CEP85Q6P2H3 762 aa17.37■□□□□ 0.37
SMPD3-204ENST00000563396 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.37■□□□□ 0.37
SMPD3-204ENST00000563396 CDK5RAP2Q96SN8 1893 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms