RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 RABEP1Q15276 862 aa16.69■□□□□ 0.26
CLK3-209ENST00000562670 NAA16Q6N069 864 aaPredicted RBP16.69■□□□□ 0.26
CLK3-209ENST00000562670 RBM8AQ9Y5S9 174 aaKnown RBP16.69■□□□□ 0.26
CLK3-209ENST00000562670 RIMBP2O15034 1052 aa16.68■□□□□ 0.26
CLK3-209ENST00000562670 HSPD1P10809 573 aaKnown RBP16.68■□□□□ 0.26
CLK3-209ENST00000562670 PRDX5P30044 214 aa16.68■□□□□ 0.26
CLK3-209ENST00000562670 MECOMQ03112 1051 aa16.68■□□□□ 0.26
CLK3-209ENST00000562670 TSGA10IPQ3SY00 556 aa16.68■□□□□ 0.26
CLK3-209ENST00000562670 SLFNL1Q499Z3 407 aa16.68■□□□□ 0.26
CLK3-209ENST00000562670 RNF20Q5VTR2 975 aa16.68■□□□□ 0.26
CLK3-209ENST00000562670 CCDC129Q6ZRS4 1044 aa16.68■□□□□ 0.26
CLK3-209ENST00000562670 ZNF384Q8TF68 577 aa16.68■□□□□ 0.26
CLK3-209ENST00000562670 AIDAQ96BJ3 306 aa16.68■□□□□ 0.26
CLK3-209ENST00000562670 LAMA4Q16363 1823 aa16.68■□□□□ 0.26
CLK3-209ENST00000562670 FOXP2O15409 715 aa16.67■□□□□ 0.26
CLK3-209ENST00000562670 ECE2O60344 883 aa16.67■□□□□ 0.26
CLK3-209ENST00000562670 CYP7A1P22680 504 aa16.67■□□□□ 0.26
CLK3-209ENST00000562670 MFSD14BQ5SR56 506 aa16.67■□□□□ 0.26
CLK3-209ENST00000562670 STRIP1Q5VSL9 837 aa16.67■□□□□ 0.26
CLK3-209ENST00000562670 DZIP1Q86YF9 867 aaKnown RBP16.67■□□□□ 0.26
CLK3-209ENST00000562670 FAM163AQ96GL9 167 aaPredicted RBP16.67■□□□□ 0.26
CLK3-209ENST00000562670 STRBPQ96SI9 672 aaKnown RBP16.67■□□□□ 0.26
CLK3-209ENST00000562670 ZNF219Q9P2Y4 722 aaPredicted RBP16.67■□□□□ 0.26
CLK3-209ENST00000562670 G3V3G9 751 aa16.66■□□□□ 0.26
CLK3-209ENST00000562670 PPIP5K2O43314 1243 aa16.66■□□□□ 0.26
CLK3-209ENST00000562670 ZKSCAN1P17029 563 aaPredicted RBP16.66■□□□□ 0.26
CLK3-209ENST00000562670 ALX1Q15699 326 aa16.66■□□□□ 0.26
CLK3-209ENST00000562670 AOC3Q16853 763 aa16.66■□□□□ 0.26
CLK3-209ENST00000562670 DCAF8Q5TAQ9 597 aa16.66■□□□□ 0.26
CLK3-209ENST00000562670 CREB3L3Q68CJ9 461 aa16.66■□□□□ 0.26
CLK3-209ENST00000562670 SLF2Q8IX21 1173 aa16.66■□□□□ 0.26
CLK3-209ENST00000562670 RIOK1Q9BRS2 568 aaKnown RBP16.66■□□□□ 0.26
CLK3-209ENST00000562670 TAOK3Q9H2K8 898 aa16.66■□□□□ 0.26
CLK3-209ENST00000562670 PPP1R1BQ9UD71 204 aaPredicted RBP16.66■□□□□ 0.26
CLK3-209ENST00000562670 CTNNA3Q9UI47 895 aa16.66■□□□□ 0.26
CLK3-209ENST00000562670 PALD1Q9ULE6 856 aa16.66■□□□□ 0.26
CLK3-209ENST00000562670 SCN9AQ15858 1988 aa16.66■□□□□ 0.26
CLK3-209ENST00000562670 TIAM2Q8IVF5 1701 aa16.65■□□□□ 0.26
CLK3-209ENST00000562670 MBD4O95243 580 aa16.65■□□□□ 0.26
CLK3-209ENST00000562670 LDHCP07864 332 aa16.65■□□□□ 0.26
CLK3-209ENST00000562670 GTF2IP78347 998 aa16.65■□□□□ 0.26
CLK3-209ENST00000562670 VPS53Q5VIR6 699 aa16.65■□□□□ 0.26
CLK3-209ENST00000562670 ADGRA1Q86SQ6 560 aa16.65■□□□□ 0.26
CLK3-209ENST00000562670 NLGN2Q8NFZ4 835 aa16.65■□□□□ 0.26
CLK3-209ENST00000562670 SNX21Q969T3 373 aa16.65■□□□□ 0.26
CLK3-209ENST00000562670 TM6SF1Q9BZW5 370 aa16.65■□□□□ 0.26
CLK3-209ENST00000562670 SNX14Q9Y5W7 946 aa16.65■□□□□ 0.26
CLK3-209ENST00000562670 MROH7-TTC4A0A0A0MT08 1334 aa16.65■□□□□ 0.26
CLK3-209ENST00000562670 GAKO14976 1311 aa16.65■□□□□ 0.26
CLK3-209ENST00000562670 MAGEB6P1A0A0J9YX57 407 aa16.64■□□□□ 0.25
CLK3-209ENST00000562670 NFKBIEO00221 500 aa16.64■□□□□ 0.25
CLK3-209ENST00000562670 SLC27A2O14975 620 aa16.64■□□□□ 0.25
CLK3-209ENST00000562670 PPP4CP60510 307 aa16.64■□□□□ 0.25
CLK3-209ENST00000562670 KRT32Q14532 448 aa16.64■□□□□ 0.25
CLK3-209ENST00000562670 DOK7Q18PE1 504 aa16.64■□□□□ 0.25
CLK3-209ENST00000562670 DACT2Q5SW24 774 aa16.64■□□□□ 0.25
CLK3-209ENST00000562670 TTLL5Q6EMB2 1281 aa16.64■□□□□ 0.25
CLK3-209ENST00000562670 GIMAP6Q6P9H5 292 aa16.64■□□□□ 0.25
CLK3-209ENST00000562670 DBNDD1Q9H9R9 158 aa16.64■□□□□ 0.25
CLK3-209ENST00000562670 COL4A5P29400 1685 aa16.64■□□□□ 0.25
CLK3-209ENST00000562670 MYO3BQ8WXR4 1341 aa16.64■□□□□ 0.25
CLK3-209ENST00000562670 USP17L3A6NCW0 530 aa16.63■□□□□ 0.25
CLK3-209ENST00000562670 USP17L4A6NCW7 530 aa16.63■□□□□ 0.25
CLK3-209ENST00000562670 PATL2C9JE40 543 aaKnown RBP16.63■□□□□ 0.25
CLK3-209ENST00000562670 IARSP41252 1262 aaKnown RBP16.63■□□□□ 0.25
CLK3-209ENST00000562670 USP17L1Q7RTZ2 530 aa16.63■□□□□ 0.25
CLK3-209ENST00000562670 KLHL34Q8N239 644 aa16.63■□□□□ 0.25
CLK3-209ENST00000562670 LCORLQ8N3X6 602 aa16.63■□□□□ 0.25
CLK3-209ENST00000562670 IPO9Q96P70 1041 aaKnown RBP16.63■□□□□ 0.25
CLK3-209ENST00000562670 MRIQ9BWK5 157 aa16.63■□□□□ 0.25
CLK3-209ENST00000562670 FHDC1Q9C0D6 1143 aaPredicted RBP16.63■□□□□ 0.25
CLK3-209ENST00000562670 JAG2Q9Y219 1238 aa16.63■□□□□ 0.25
CLK3-209ENST00000562670 BCS1LQ9Y276 419 aa16.63■□□□□ 0.25
CLK3-209ENST00000562670 HDLBPQ00341 1268 aaKnown RBP16.62■□□□□ 0.25
CLK3-209ENST00000562670 BECN1Q14457 450 aa16.62■□□□□ 0.25
CLK3-209ENST00000562670 RASEFQ8IZ41 740 aa16.62■□□□□ 0.25
CLK3-209ENST00000562670 LARGE2Q8N3Y3 721 aa16.62■□□□□ 0.25
CLK3-209ENST00000562670 CERS5Q8N5B7 392 aa16.62■□□□□ 0.25
CLK3-209ENST00000562670 NACAP1Q9BZK3 213 aa16.62■□□□□ 0.25
CLK3-209ENST00000562670 ARMT1Q9H993 441 aa16.62■□□□□ 0.25
CLK3-209ENST00000562670 MYH2Q9UKX2 1941 aa16.62■□□□□ 0.25
CLK3-209ENST00000562670 GPR75-ASB3A0A0A6YYF3 556 aa16.61■□□□□ 0.25
CLK3-209ENST00000562670 YDJCA8MPS7 323 aa16.61■□□□□ 0.25
CLK3-209ENST00000562670 GSG1L2A8MUP6 293 aa16.61■□□□□ 0.25
CLK3-209ENST00000562670 BAG3O95817 575 aa16.61■□□□□ 0.25
CLK3-209ENST00000562670 FGAP02671 866 aa16.61■□□□□ 0.25
CLK3-209ENST00000562670 CYP21A2P08686 494 aa16.61■□□□□ 0.25
CLK3-209ENST00000562670 PLCG2P16885 1265 aa16.61■□□□□ 0.25
CLK3-209ENST00000562670 GRIK5Q16478 980 aa16.61■□□□□ 0.25
CLK3-209ENST00000562670 MIGA1Q8NAN2 632 aa16.61■□□□□ 0.25
CLK3-209ENST00000562670 EPB41L4AQ9HCS5 686 aaPredicted RBP16.61■□□□□ 0.25
CLK3-209ENST00000562670 ZNF277Q9NRM2 450 aaPredicted RBP16.61■□□□□ 0.25
CLK3-209ENST00000562670 DDX60LQ5H9U9 1706 aaKnown RBP16.61■□□□□ 0.25
CLK3-209ENST00000562670 ST18O60284 1047 aa16.6■□□□□ 0.25
CLK3-209ENST00000562670 PSMA5P28066 241 aa16.6■□□□□ 0.25
CLK3-209ENST00000562670 IMMTQ16891 758 aaKnown RBP16.6■□□□□ 0.25
CLK3-209ENST00000562670 HHIPL2Q6UWX4 724 aa16.6■□□□□ 0.25
CLK3-209ENST00000562670 NIM1KQ8IY84 436 aa16.6■□□□□ 0.25
CLK3-209ENST00000562670 NOL10Q9BSC4 688 aaKnown RBP16.6■□□□□ 0.25
CLK3-209ENST00000562670 CRNKL1Q9BZJ0 848 aaKnown RBP16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms