RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 ANO2Q9NQ90 1003 aa8.06□□□□□ -1.12
VPS13C-210ENST00000561258 LOC105371045A0A1W2PR82 267 aa8.05□□□□□ -1.12
VPS13C-210ENST00000561258 EREGO14944 169 aa8.05□□□□□ -1.12
VPS13C-210ENST00000561258 DLGAP3O95886 979 aa8.05□□□□□ -1.12
VPS13C-210ENST00000561258 IKBKEQ14164 716 aa8.05□□□□□ -1.12
VPS13C-210ENST00000561258 GLYCTKQ8IVS8 523 aa8.05□□□□□ -1.12
VPS13C-210ENST00000561258 ABI1Q8IZP0 508 aa8.05□□□□□ -1.12
VPS13C-210ENST00000561258 GTF3C2Q8WUA4 911 aaPredicted RBP8.05□□□□□ -1.12
VPS13C-210ENST00000561258 BSNDQ8WZ55 320 aa8.05□□□□□ -1.12
VPS13C-210ENST00000561258 ATG3Q9NT62 314 aa8.05□□□□□ -1.12
VPS13C-210ENST00000561258 LOC100289279A0A1B0GTE1 492 aa8.04□□□□□ -1.12
VPS13C-210ENST00000561258 DRD2P14416 443 aa8.04□□□□□ -1.12
VPS13C-210ENST00000561258 MPSTP25325 297 aa8.04□□□□□ -1.12
VPS13C-210ENST00000561258 MZF1P28698 734 aaPredicted RBP8.04□□□□□ -1.12
VPS13C-210ENST00000561258 EIF1AXP47813 144 aaKnown RBP8.04□□□□□ -1.12
VPS13C-210ENST00000561258 SMG8Q8ND04 991 aaKnown RBP8.04□□□□□ -1.12
VPS13C-210ENST00000561258 TTC16Q8NEE8 873 aa8.04□□□□□ -1.12
VPS13C-210ENST00000561258 PMEPA1Q969W9 287 aa8.04□□□□□ -1.12
VPS13C-210ENST00000561258 LEMD3Q9Y2U8 911 aa8.04□□□□□ -1.12
VPS13C-210ENST00000561258 TIAF1O95411 115 aa8.03□□□□□ -1.12
VPS13C-210ENST00000561258 ARHGAP4P98171 946 aa8.03□□□□□ -1.12
VPS13C-210ENST00000561258 NFKBIBQ15653 356 aa8.03□□□□□ -1.12
VPS13C-210ENST00000561258 ASAP3Q8TDY4 903 aa8.03□□□□□ -1.12
VPS13C-210ENST00000561258 OSBPL1AQ9BXW6 950 aa8.03□□□□□ -1.12
VPS13C-210ENST00000561258 POLIQ9UNA4 740 aa8.03□□□□□ -1.12
VPS13C-210ENST00000561258 FKBP4Q02790 459 aaKnown RBP eCLIP8.02□□□□□ -1.13
VPS13C-210ENST00000561258 SF3B2Q13435 895 aaKnown RBP8.02□□□□□ -1.13
VPS13C-210ENST00000561258 MTMR3Q13615 1198 aa8.02□□□□□ -1.13
VPS13C-210ENST00000561258 MSMPQ1L6U9 139 aa8.02□□□□□ -1.13
VPS13C-210ENST00000561258 CDPF1Q6NVV7 123 aa8.02□□□□□ -1.13
VPS13C-210ENST00000561258 FBXO33Q7Z6M2 555 aa8.02□□□□□ -1.13
VPS13C-210ENST00000561258 GIMAP7Q8NHV1 300 aa8.02□□□□□ -1.13
VPS13C-210ENST00000561258 FBLIM1Q8WUP2 373 aa8.02□□□□□ -1.13
VPS13C-210ENST00000561258 ASB16Q96NS5 453 aa8.02□□□□□ -1.13
VPS13C-210ENST00000561258 SUGCTQ9HAC7 445 aa8.02□□□□□ -1.13
VPS13C-210ENST00000561258 CYP4F12Q9HCS2 524 aa8.02□□□□□ -1.13
VPS13C-210ENST00000561258 DCTN4Q9UJW0 460 aa8.02□□□□□ -1.13
VPS13C-210ENST00000561258 FAM95CA0A1B0GW59 222 aa8.01□□□□□ -1.13
VPS13C-210ENST00000561258 FOSL1P15407 271 aa8.01□□□□□ -1.13
VPS13C-210ENST00000561258 MAPK1P28482 360 aa8.01□□□□□ -1.13
VPS13C-210ENST00000561258 LATS2Q9NRM7 1088 aa8.01□□□□□ -1.13
VPS13C-210ENST00000561258 CCDC39Q9UFE4 941 aa8.01□□□□□ -1.13
VPS13C-210ENST00000561258 FOXD3Q9UJU5 478 aaPredicted RBP8.01□□□□□ -1.13
VPS13C-210ENST00000561258 ANGEL1Q9UNK9 670 aaKnown RBP8.01□□□□□ -1.13
VPS13C-210ENST00000561258 PHACTR2O75167 634 aa8□□□□□ -1.13
VPS13C-210ENST00000561258 TNFRSF21O75509 655 aa8□□□□□ -1.13
VPS13C-210ENST00000561258 ESRRAP11474 423 aaPredicted RBP8□□□□□ -1.13
VPS13C-210ENST00000561258 ADMP35318 185 aa8□□□□□ -1.13
VPS13C-210ENST00000561258 USP11P51784 963 aa8□□□□□ -1.13
VPS13C-210ENST00000561258 NFXL1Q6ZNB6 911 aa8□□□□□ -1.13
VPS13C-210ENST00000561258 VAMP1P23763 118 aa7.99□□□□□ -1.13
VPS13C-210ENST00000561258 GSTM4Q03013 218 aa7.99□□□□□ -1.13
VPS13C-210ENST00000561258 ZNF326Q5BKZ1 582 aaKnown RBP7.99□□□□□ -1.13
VPS13C-210ENST00000561258 EXOSC6Q5RKV6 272 aaKnown RBP7.99□□□□□ -1.13
VPS13C-210ENST00000561258 PAOXQ6QHF9 649 aa7.99□□□□□ -1.13
VPS13C-210ENST00000561258 C2CD4AQ8NCU7 369 aaPredicted RBP7.99□□□□□ -1.13
VPS13C-210ENST00000561258 SOX17Q9H6I2 414 aaPredicted RBP7.99□□□□□ -1.13
VPS13C-210ENST00000561258 METTL12A8MUP2 240 aa7.98□□□□□ -1.13
VPS13C-210ENST00000561258 EDN3P14138 238 aa7.98□□□□□ -1.13
VPS13C-210ENST00000561258 NPR3P17342 541 aa7.98□□□□□ -1.13
VPS13C-210ENST00000561258 COL19A1Q14993 1142 aa7.98□□□□□ -1.13
VPS13C-210ENST00000561258 PEAR1Q5VY43 1037 aaPredicted RBP7.98□□□□□ -1.13
VPS13C-210ENST00000561258 BHLHE41Q9C0J9 482 aaPredicted RBP7.98□□□□□ -1.13
VPS13C-210ENST00000561258 TCF3P15923 654 aa7.97□□□□□ -1.13
VPS13C-210ENST00000561258 TAGLNQ01995 201 aaKnown RBP7.97□□□□□ -1.13
VPS13C-210ENST00000561258 SOX4Q06945 474 aaPredicted RBP7.97□□□□□ -1.13
VPS13C-210ENST00000561258 FZD5Q13467 585 aa7.97□□□□□ -1.13
VPS13C-210ENST00000561258 AAMPQ13685 434 aa7.97□□□□□ -1.13
VPS13C-210ENST00000561258 ZSCAN29Q8IWY8 852 aaPredicted RBP7.97□□□□□ -1.13
VPS13C-210ENST00000561258 SNX29Q8TEQ0 813 aa7.97□□□□□ -1.13
VPS13C-210ENST00000561258 TBC1D32Q96NH3 1257 aa7.97□□□□□ -1.13
VPS13C-210ENST00000561258 FAM170BA6NMN3 283 aa7.96□□□□□ -1.14
VPS13C-210ENST00000561258 CYP26A1O43174 497 aa7.96□□□□□ -1.14
VPS13C-210ENST00000561258 PRNPP04156 253 aa7.96□□□□□ -1.14
VPS13C-210ENST00000561258 CPSF6Q16630 551 aaKnown RBP eCLIP7.96□□□□□ -1.14
VPS13C-210ENST00000561258 ALKBH2Q6NS38 261 aa7.96□□□□□ -1.14
VPS13C-210ENST00000561258 ZAR1Q86SH2 424 aa7.96□□□□□ -1.14
VPS13C-210ENST00000561258 METTL22Q9BUU2 404 aaPredicted RBP7.96□□□□□ -1.14
VPS13C-210ENST00000561258 PRKAG2Q9UGJ0 569 aa7.96□□□□□ -1.14
VPS13C-210ENST00000561258 CBLL1Q75N03 491 aa7.95□□□□□ -1.14
VPS13C-210ENST00000561258 VSIG10LQ86VR7 867 aa7.95□□□□□ -1.14
VPS13C-210ENST00000561258 TP53INP2Q8IXH6 220 aa7.95□□□□□ -1.14
VPS13C-210ENST00000561258 GATA6Q92908 595 aa7.95□□□□□ -1.14
VPS13C-210ENST00000561258 NRSN2Q9GZP1 204 aa7.95□□□□□ -1.14
VPS13C-210ENST00000561258 POLR3DP05423 398 aaPredicted RBP7.94□□□□□ -1.14
VPS13C-210ENST00000561258 CTSBP07858 339 aa7.94□□□□□ -1.14
VPS13C-210ENST00000561258 OGFOD2Q6N063 350 aa7.94□□□□□ -1.14
VPS13C-210ENST00000561258 EZH1Q92800 747 aaPredicted RBP7.94□□□□□ -1.14
VPS13C-210ENST00000561258 FBXL18Q96ME1 805 aa7.94□□□□□ -1.14
VPS13C-210ENST00000561258 FZD6O60353 706 aa7.93□□□□□ -1.14
VPS13C-210ENST00000561258 FAM13AO94988 1023 aa7.93□□□□□ -1.14
VPS13C-210ENST00000561258 RECKO95980 971 aa7.93□□□□□ -1.14
VPS13C-210ENST00000561258 ADH5P11766 374 aa7.93□□□□□ -1.14
VPS13C-210ENST00000561258 RBCK1Q9BYM8 510 aa7.93□□□□□ -1.14
VPS13C-210ENST00000561258 BSDC1Q9NW68 430 aaPredicted RBP7.93□□□□□ -1.14
VPS13C-210ENST00000561258 USP35Q9P2H5 1018 aa7.93□□□□□ -1.14
VPS13C-210ENST00000561258 ACTL7BQ9Y614 415 aa7.93□□□□□ -1.14
VPS13C-210ENST00000561258 SHROOM4Q9ULL8 1493 aa7.93□□□□□ -1.14
VPS13C-210ENST00000561258 NFICP08651 508 aa7.92□□□□□ -1.14
VPS13C-210ENST00000561258 RAB6AP20340 208 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms