RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 NBPF7P0C2Y1 421 aaPredicted RBP11.53□□□□□ -0.56
HDDC3-204ENST00000559834 SP3Q02447 781 aa11.53□□□□□ -0.56
HDDC3-204ENST00000559834 METTL24Q5JXM2 366 aa11.53□□□□□ -0.56
HDDC3-204ENST00000559834 OPTNQ96CV9 577 aa11.53□□□□□ -0.56
HDDC3-204ENST00000559834 HOOK2Q96ED9 719 aa11.53□□□□□ -0.56
HDDC3-204ENST00000559834 KAZALD1Q96I82 304 aa11.53□□□□□ -0.56
HDDC3-204ENST00000559834 ELP3Q9H9T3 547 aa11.53□□□□□ -0.56
HDDC3-204ENST00000559834 TMOD2Q9NZR1 351 aa11.53□□□□□ -0.56
HDDC3-204ENST00000559834 CSADQ9Y600 493 aa11.53□□□□□ -0.56
HDDC3-204ENST00000559834 PDE8BO95263 885 aa11.52□□□□□ -0.57
HDDC3-204ENST00000559834 GJA5P36382 358 aa11.52□□□□□ -0.57
HDDC3-204ENST00000559834 GTF2A2P52657 109 aa11.52□□□□□ -0.57
HDDC3-204ENST00000559834 CHAF1AQ13111 956 aaPredicted RBP11.52□□□□□ -0.57
HDDC3-204ENST00000559834 CRHR2Q13324 411 aa11.52□□□□□ -0.57
HDDC3-204ENST00000559834 RABL6Q3YEC7 729 aaPredicted RBP11.52□□□□□ -0.57
HDDC3-204ENST00000559834 TEKT1Q969V4 418 aa11.52□□□□□ -0.57
HDDC3-204ENST00000559834 TEPSINQ96N21 525 aa11.52□□□□□ -0.57
HDDC3-204ENST00000559834 PTPN18Q99952 460 aa11.52□□□□□ -0.57
HDDC3-204ENST00000559834 BICC1Q9H694 974 aaKnown RBP11.52□□□□□ -0.57
HDDC3-204ENST00000559834 EFCC1Q9HA90 598 aa11.52□□□□□ -0.57
HDDC3-204ENST00000559834 ZFYVE28Q9HCC9 887 aa11.52□□□□□ -0.57
HDDC3-204ENST00000559834 PTPN22Q9Y2R2 807 aa11.52□□□□□ -0.57
HDDC3-204ENST00000559834 SUGT1Q9Y2Z0 365 aa11.52□□□□□ -0.57
HDDC3-204ENST00000559834 AOX1Q06278 1338 aa11.52□□□□□ -0.57
HDDC3-204ENST00000559834 SSC5DA1L4H1 1573 aa11.51□□□□□ -0.57
HDDC3-204ENST00000559834 IFIT1P09914 478 aaKnown RBP11.51□□□□□ -0.57
HDDC3-204ENST00000559834 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.51□□□□□ -0.57
HDDC3-204ENST00000559834 CD99L2Q8TCZ2 262 aa11.51□□□□□ -0.57
HDDC3-204ENST00000559834 GCC1Q96CN9 775 aa11.51□□□□□ -0.57
HDDC3-204ENST00000559834 MS4A4AQ96JQ5 239 aa11.51□□□□□ -0.57
HDDC3-204ENST00000559834 TMEM39BQ9GZU3 492 aa11.51□□□□□ -0.57
HDDC3-204ENST00000559834 IQSEC3Q9UPP2 1182 aaPredicted RBP11.51□□□□□ -0.57
HDDC3-204ENST00000559834 MAST3O60307 1309 aa11.51□□□□□ -0.57
HDDC3-204ENST00000559834 PTPRCP08575 1304 aa11.51□□□□□ -0.57
HDDC3-204ENST00000559834 CCL15-CCL14A0A0B4J2E2 113 aa11.5□□□□□ -0.57
HDDC3-204ENST00000559834 TAF1CQ15572 869 aaPredicted RBP11.5□□□□□ -0.57
HDDC3-204ENST00000559834 CCL15Q16663 113 aa11.5□□□□□ -0.57
HDDC3-204ENST00000559834 LRRC24Q50LG9 513 aa11.5□□□□□ -0.57
HDDC3-204ENST00000559834 FKBP1CQ5VVH2 108 aa11.5□□□□□ -0.57
HDDC3-204ENST00000559834 NBPF11Q86T75 865 aa11.5□□□□□ -0.57
HDDC3-204ENST00000559834 FAM83AQ86UY5 434 aa11.5□□□□□ -0.57
HDDC3-204ENST00000559834 MRPL50Q8N5N7 158 aaKnown RBP11.5□□□□□ -0.57
HDDC3-204ENST00000559834 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.5□□□□□ -0.57
HDDC3-204ENST00000559834 ZDHHC15Q96MV8 337 aa11.5□□□□□ -0.57
HDDC3-204ENST00000559834 CETPP11597 493 aa11.49□□□□□ -0.57
HDDC3-204ENST00000559834 BCAMP50895 628 aa11.49□□□□□ -0.57
HDDC3-204ENST00000559834 VGLL4Q14135 290 aa11.49□□□□□ -0.57
HDDC3-204ENST00000559834 PUM3Q15397 648 aaKnown RBP11.49□□□□□ -0.57
HDDC3-204ENST00000559834 DCAF15Q66K64 600 aa11.49□□□□□ -0.57
HDDC3-204ENST00000559834 ERO1BQ86YB8 467 aa11.49□□□□□ -0.57
HDDC3-204ENST00000559834 ANKRD44Q8N8A2 993 aa11.49□□□□□ -0.57
HDDC3-204ENST00000559834 WDR66Q8TBY9 1149 aa11.49□□□□□ -0.57
HDDC3-204ENST00000559834 ARMC5Q96C12 935 aa11.49□□□□□ -0.57
HDDC3-204ENST00000559834 OTUD5Q96G74 571 aa11.49□□□□□ -0.57
HDDC3-204ENST00000559834 TMEM106CQ9BVX2 250 aa11.49□□□□□ -0.57
HDDC3-204ENST00000559834 USP44Q9H0E7 712 aa11.49□□□□□ -0.57
HDDC3-204ENST00000559834 ECM29Q5VYK3 1845 aa11.49□□□□□ -0.57
HDDC3-204ENST00000559834 SPDYE5A6NIY4 337 aa11.48□□□□□ -0.57
HDDC3-204ENST00000559834 E9PSI1 815 aa11.48□□□□□ -0.57
HDDC3-204ENST00000559834 SLC5A1P13866 664 aa11.48□□□□□ -0.57
HDDC3-204ENST00000559834 KIF22Q14807 665 aa11.48□□□□□ -0.57
HDDC3-204ENST00000559834 GRIK5Q16478 980 aa11.48□□□□□ -0.57
HDDC3-204ENST00000559834 HHIPL2Q6UWX4 724 aa11.48□□□□□ -0.57
HDDC3-204ENST00000559834 VGLL2Q8N8G2 317 aa11.48□□□□□ -0.57
HDDC3-204ENST00000559834 BRI3BPQ8WY22 251 aa11.48□□□□□ -0.57
HDDC3-204ENST00000559834 ZCCHC17Q9NP64 241 aaKnown RBP11.48□□□□□ -0.57
HDDC3-204ENST00000559834 HDAC5Q9UQL6 1122 aa11.48□□□□□ -0.57
HDDC3-204ENST00000559834 KIF16BQ96L93 1317 aa11.48□□□□□ -0.57
HDDC3-204ENST00000559834 ZNF521Q96K83 1311 aa11.47□□□□□ -0.57
HDDC3-204ENST00000559834 POTEFA5A3E0 1075 aa11.47□□□□□ -0.57
HDDC3-204ENST00000559834 CACNB3P54284 484 aa11.47□□□□□ -0.57
HDDC3-204ENST00000559834 SNAPC2Q13487 334 aa11.47□□□□□ -0.57
HDDC3-204ENST00000559834 APOBEC3HQ6NTF7 200 aaKnown RBP11.47□□□□□ -0.57
HDDC3-204ENST00000559834 CDAN1Q8IWY9 1227 aa11.47□□□□□ -0.57
HDDC3-204ENST00000559834 CNKSR2Q8WXI2 1034 aa11.47□□□□□ -0.57
HDDC3-204ENST00000559834 LPIN2Q92539 896 aa11.47□□□□□ -0.57
HDDC3-204ENST00000559834 WRNIP1Q96S55 665 aa11.47□□□□□ -0.57
HDDC3-204ENST00000559834 GNL3LQ9NVN8 582 aaKnown RBP11.47□□□□□ -0.57
HDDC3-204ENST00000559834 EYA2O00167 538 aa11.46□□□□□ -0.57
HDDC3-204ENST00000559834 TLR2O60603 784 aa11.46□□□□□ -0.57
HDDC3-204ENST00000559834 GNRH1P01148 92 aa11.46□□□□□ -0.57
HDDC3-204ENST00000559834 FGFR2P21802 821 aa11.46□□□□□ -0.57
HDDC3-204ENST00000559834 SLC9C1Q4G0N8 1177 aa11.46□□□□□ -0.57
HDDC3-204ENST00000559834 FAM43AQ8N2R8 423 aa11.46□□□□□ -0.57
HDDC3-204ENST00000559834 KLHDC4Q8TBB5 520 aa11.46□□□□□ -0.57
HDDC3-204ENST00000559834 SSH1Q8WYL5 1049 aa11.46□□□□□ -0.57
HDDC3-204ENST00000559834 ZNF341Q9BYN7 854 aa11.46□□□□□ -0.57
HDDC3-204ENST00000559834 FBXO3Q9UK99 471 aa11.46□□□□□ -0.57
HDDC3-204ENST00000559834 IRF6O14896 467 aa11.45□□□□□ -0.58
HDDC3-204ENST00000559834 PPATQ06203 517 aa11.45□□□□□ -0.58
HDDC3-204ENST00000559834 PPIL2Q13356 520 aa11.45□□□□□ -0.58
HDDC3-204ENST00000559834 ALDH1L2Q3SY69 923 aa11.45□□□□□ -0.58
HDDC3-204ENST00000559834 FAM151AQ8WW52 585 aa11.45□□□□□ -0.58
HDDC3-204ENST00000559834 ZKSCAN4Q969J2 545 aaPredicted RBP11.45□□□□□ -0.58
HDDC3-204ENST00000559834 CEP126Q9P2H0 1117 aa11.45□□□□□ -0.58
HDDC3-204ENST00000559834 SNCAIPQ9Y6H5 919 aa11.45□□□□□ -0.58
HDDC3-204ENST00000559834 A0A1B0GUL6 1792 aa11.45□□□□□ -0.58
HDDC3-204ENST00000559834 BTBD19C9JJ37 291 aa11.44□□□□□ -0.58
HDDC3-204ENST00000559834 EN2P19622 333 aaPredicted RBP11.44□□□□□ -0.58
HDDC3-204ENST00000559834 PRMT2P55345 433 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms