RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 RFX5P48382 616 aaPredicted RBP18.28■□□□□ 0.52
SHMT2-235ENST00000557740 CLMNQ96JQ2 1002 aa18.28■□□□□ 0.52
SHMT2-235ENST00000557740 HDAC5Q9UQL6 1122 aa18.28■□□□□ 0.52
SHMT2-235ENST00000557740 MAST3O60307 1309 aa18.27■□□□□ 0.52
SHMT2-235ENST00000557740 MANSC4A6NHS7 340 aaPredicted RBP18.27■□□□□ 0.52
SHMT2-235ENST00000557740 TCP10L2B9ZVM9 353 aa18.27■□□□□ 0.52
SHMT2-235ENST00000557740 ZBTB48P10074 688 aaPredicted RBP18.27■□□□□ 0.52
SHMT2-235ENST00000557740 FGFR2P21802 821 aa18.27■□□□□ 0.52
SHMT2-235ENST00000557740 TNNI2P48788 182 aa18.27■□□□□ 0.52
SHMT2-235ENST00000557740 ZNF296Q8WUU4 475 aaPredicted RBP18.27■□□□□ 0.52
SHMT2-235ENST00000557740 LPIN2Q92539 896 aa18.27■□□□□ 0.52
SHMT2-235ENST00000557740 TEKT1Q969V4 418 aa18.27■□□□□ 0.52
SHMT2-235ENST00000557740 WNK4Q96J92 1243 aa18.27■□□□□ 0.52
SHMT2-235ENST00000557740 ALDH1A1P00352 501 aa18.26■□□□□ 0.51
SHMT2-235ENST00000557740 HDLBPQ00341 1268 aaKnown RBP18.26■□□□□ 0.51
SHMT2-235ENST00000557740 GRIK5Q16478 980 aa18.26■□□□□ 0.51
SHMT2-235ENST00000557740 SIL1Q9H173 461 aa18.26■□□□□ 0.51
SHMT2-235ENST00000557740 TMOD2Q9NZR1 351 aa18.26■□□□□ 0.51
SHMT2-235ENST00000557740 GPR25O00155 361 aa18.25■□□□□ 0.51
SHMT2-235ENST00000557740 RARSP54136 660 aaKnown RBP18.25■□□□□ 0.51
SHMT2-235ENST00000557740 INHBEP58166 350 aa18.25■□□□□ 0.51
SHMT2-235ENST00000557740 MLLT1Q03111 559 aaPredicted RBP18.25■□□□□ 0.51
SHMT2-235ENST00000557740 ANKRD13AQ8IZ07 590 aa18.25■□□□□ 0.51
SHMT2-235ENST00000557740 FBXO3Q9UK99 471 aa18.25■□□□□ 0.51
SHMT2-235ENST00000557740 SUGT1Q9Y2Z0 365 aa18.25■□□□□ 0.51
SHMT2-235ENST00000557740 LRRFIP2Q9Y608 721 aaKnown RBP18.25■□□□□ 0.51
SHMT2-235ENST00000557740 USP2O75604 605 aaPredicted RBP18.24■□□□□ 0.51
SHMT2-235ENST00000557740 CIAO1O76071 339 aa18.24■□□□□ 0.51
SHMT2-235ENST00000557740 ATP2B3Q16720 1220 aa18.24■□□□□ 0.51
SHMT2-235ENST00000557740 NOM1Q5C9Z4 860 aaKnown RBP18.24■□□□□ 0.51
SHMT2-235ENST00000557740 ATG9AQ7Z3C6 839 aa18.24■□□□□ 0.51
SHMT2-235ENST00000557740 CFHR5Q9BXR6 569 aa18.24■□□□□ 0.51
SHMT2-235ENST00000557740 TMEM39BQ9GZU3 492 aa18.24■□□□□ 0.51
SHMT2-235ENST00000557740 CEP126Q9P2H0 1117 aa18.24■□□□□ 0.51
SHMT2-235ENST00000557740 IFNL1Q8IU54 200 aa18.23■□□□□ 0.51
SHMT2-235ENST00000557740 WDR66Q8TBY9 1149 aa18.23■□□□□ 0.51
SHMT2-235ENST00000557740 ZDHHC15Q96MV8 337 aa18.23■□□□□ 0.51
SHMT2-235ENST00000557740 GNL3LQ9NVN8 582 aaKnown RBP18.23■□□□□ 0.51
SHMT2-235ENST00000557740 FKTNO75072 461 aa18.22■□□□□ 0.51
SHMT2-235ENST00000557740 RGS19P49795 217 aa18.22■□□□□ 0.51
SHMT2-235ENST00000557740 CACNB3P54284 484 aa18.22■□□□□ 0.51
SHMT2-235ENST00000557740 PKN2Q16513 984 aaKnown RBP18.22■□□□□ 0.51
SHMT2-235ENST00000557740 CDAN1Q8IWY9 1227 aa18.22■□□□□ 0.51
SHMT2-235ENST00000557740 TEPSINQ96N21 525 aa18.22■□□□□ 0.51
SHMT2-235ENST00000557740 MEIS3Q99687 375 aa18.22■□□□□ 0.51
SHMT2-235ENST00000557740 ELP3Q9H9T3 547 aa18.22■□□□□ 0.51
SHMT2-235ENST00000557740 IL15P40933 162 aaPredicted RBP18.21■□□□□ 0.51
SHMT2-235ENST00000557740 OTUD7BQ6GQQ9 843 aa18.21■□□□□ 0.51
SHMT2-235ENST00000557740 ARHGAP45Q92619 1136 aa18.21■□□□□ 0.51
SHMT2-235ENST00000557740 MRIQ9BWK5 157 aa18.21■□□□□ 0.51
SHMT2-235ENST00000557740 IGF2BP3O00425 579 aaKnown RBP eCLIP18.2■□□□□ 0.5
SHMT2-235ENST00000557740 GNAI3P08754 354 aa18.2■□□□□ 0.5
SHMT2-235ENST00000557740 GJA5P36382 358 aa18.2■□□□□ 0.5
SHMT2-235ENST00000557740 HHIPL2Q6UWX4 724 aa18.2■□□□□ 0.5
SHMT2-235ENST00000557740 OPTNQ96CV9 577 aa18.2■□□□□ 0.5
SHMT2-235ENST00000557740 R3HDMLQ9H3Y0 253 aa18.2■□□□□ 0.5
SHMT2-235ENST00000557740 PA2G4Q9UQ80 394 aaKnown RBP18.2■□□□□ 0.5
SHMT2-235ENST00000557740 CSADQ9Y600 493 aa18.2■□□□□ 0.5
SHMT2-235ENST00000557740 IPO8O15397 1037 aaKnown RBP18.19■□□□□ 0.5
SHMT2-235ENST00000557740 SOX10P56693 466 aa18.19■□□□□ 0.5
SHMT2-235ENST00000557740 INTS3Q68E01 1043 aaKnown RBP18.19■□□□□ 0.5
SHMT2-235ENST00000557740 APOBEC3HQ6NTF7 200 aaKnown RBP18.19■□□□□ 0.5
SHMT2-235ENST00000557740 HOOK2Q96ED9 719 aa18.19■□□□□ 0.5
SHMT2-235ENST00000557740 HPS5Q9UPZ3 1129 aa18.19■□□□□ 0.5
SHMT2-235ENST00000557740 MAP3K9P80192 1104 aa18.18■□□□□ 0.5
SHMT2-235ENST00000557740 VGLL4Q14135 290 aa18.18■□□□□ 0.5
SHMT2-235ENST00000557740 FKBP1CQ5VVH2 108 aa18.18■□□□□ 0.5
SHMT2-235ENST00000557740 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.18■□□□□ 0.5
SHMT2-235ENST00000557740 FAM83AQ86UY5 434 aa18.18■□□□□ 0.5
SHMT2-235ENST00000557740 COPRSQ9NQ92 184 aa18.18■□□□□ 0.5
SHMT2-235ENST00000557740 RPAP1Q9BWH6 1393 aaPredicted RBP18.17■□□□□ 0.5
SHMT2-235ENST00000557740 OTOFQ9HC10 1997 aa18.17■□□□□ 0.5
SHMT2-235ENST00000557740 SEMA3EO15041 775 aa18.17■□□□□ 0.5
SHMT2-235ENST00000557740 LDHBP07195 334 aaKnown RBP18.17■□□□□ 0.5
SHMT2-235ENST00000557740 PRDX5P30044 214 aa18.17■□□□□ 0.5
SHMT2-235ENST00000557740 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.17■□□□□ 0.58e-7■■□□□ 11.7
SHMT2-235ENST00000557740 FRAT1Q92837 279 aaPredicted RBP18.17■□□□□ 0.5
SHMT2-235ENST00000557740 DENND2AQ9ULE3 1009 aa18.17■□□□□ 0.5
SHMT2-235ENST00000557740 SRGAP3O43295 1099 aa18.16■□□□□ 0.5
SHMT2-235ENST00000557740 TRIM27P14373 513 aa18.16■□□□□ 0.5
SHMT2-235ENST00000557740 PHKA1P46020 1223 aa18.16■□□□□ 0.5
SHMT2-235ENST00000557740 DIXDC1Q155Q3 683 aa18.16■□□□□ 0.5
SHMT2-235ENST00000557740 DCAF15Q66K64 600 aa18.16■□□□□ 0.5
SHMT2-235ENST00000557740 FBXO46Q6PJ61 603 aaPredicted RBP18.16■□□□□ 0.5
SHMT2-235ENST00000557740 OTUD5Q96G74 571 aa18.16■□□□□ 0.5
SHMT2-235ENST00000557740 WRNIP1Q96S55 665 aa18.16■□□□□ 0.5
SHMT2-235ENST00000557740 DAGLAQ9Y4D2 1042 aa18.16■□□□□ 0.5
SHMT2-235ENST00000557740 TESPA1A2RU30 521 aaPredicted RBP18.15■□□□□ 0.5
SHMT2-235ENST00000557740 GTF2A2P52657 109 aa18.15■□□□□ 0.5
SHMT2-235ENST00000557740 CRHR2Q13324 411 aa18.15■□□□□ 0.5
SHMT2-235ENST00000557740 ATF7IPQ6VMQ6 1270 aa18.15■□□□□ 0.5
SHMT2-235ENST00000557740 CNKSR2Q8WXI2 1034 aa18.15■□□□□ 0.5
SHMT2-235ENST00000557740 SALL1Q9NSC2 1324 aa18.15■□□□□ 0.5
SHMT2-235ENST00000557740 CCL15-CCL14A0A0B4J2E2 113 aa18.14■□□□□ 0.49
SHMT2-235ENST00000557740 ADORA1P30542 326 aa18.14■□□□□ 0.49
SHMT2-235ENST00000557740 MTX1Q13505 466 aa18.14■□□□□ 0.49
SHMT2-235ENST00000557740 CCL15Q16663 113 aa18.14■□□□□ 0.49
SHMT2-235ENST00000557740 CCDC102BQ68D86 513 aa18.14■□□□□ 0.49
SHMT2-235ENST00000557740 ZGPATQ8N5A5 531 aaKnown RBP18.14■□□□□ 0.49
SHMT2-235ENST00000557740 AKAP2Q9Y2D5 859 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms