RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 GOLGA2Q08379 1002 aa15.84■□□□□ 0.13
SHMT2-230ENST00000557427 TWISTNBQ3B726 338 aaPredicted RBP15.84■□□□□ 0.13
SHMT2-230ENST00000557427 NCBP3Q53F19 620 aaKnown RBP15.84■□□□□ 0.13
SHMT2-230ENST00000557427 DEFB123Q8N688 67 aa15.84■□□□□ 0.13
SHMT2-230ENST00000557427 CHMP4AQ9BY43 222 aa15.84■□□□□ 0.13
SHMT2-230ENST00000557427 CWC25Q9NXE8 425 aaPredicted RBP15.84■□□□□ 0.13
SHMT2-230ENST00000557427 STXBP5LQ9Y2K9 1186 aa15.84■□□□□ 0.13
SHMT2-230ENST00000557427 IL16Q14005 1332 aa15.84■□□□□ 0.13
SHMT2-230ENST00000557427 ZNF521Q96K83 1311 aa15.84■□□□□ 0.13
SHMT2-230ENST00000557427 IRS2Q9Y4H2 1338 aa15.84■□□□□ 0.13
SHMT2-230ENST00000557427 VCANP13611 3396 aa15.83■□□□□ 0.13
SHMT2-230ENST00000557427 BTBD19C9JJ37 291 aa15.83■□□□□ 0.12
SHMT2-230ENST00000557427 SNAP23O00161 211 aa15.83■□□□□ 0.12
SHMT2-230ENST00000557427 GRK4P32298 578 aa15.83■□□□□ 0.12
SHMT2-230ENST00000557427 KIF22Q14807 665 aa15.83■□□□□ 0.12
SHMT2-230ENST00000557427 TRIM47Q96LD4 638 aa15.83■□□□□ 0.12
SHMT2-230ENST00000557427 SRRDQ9UH36 339 aa15.83■□□□□ 0.12
SHMT2-230ENST00000557427 MYO1BO43795 1136 aa15.82■□□□□ 0.12
SHMT2-230ENST00000557427 SLC4A2P04920 1241 aa15.82■□□□□ 0.12
SHMT2-230ENST00000557427 OSBPP22059 807 aa15.82■□□□□ 0.12
SHMT2-230ENST00000557427 GPR153Q6NV75 609 aa15.82■□□□□ 0.12
SHMT2-230ENST00000557427 C17orf99Q6UX52 265 aa15.82■□□□□ 0.12
SHMT2-230ENST00000557427 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.82■□□□□ 0.128e-7■■□□□ 11.7
SHMT2-230ENST00000557427 STK31Q9BXU1 1019 aa15.82■□□□□ 0.12
SHMT2-230ENST00000557427 RNF208Q9H0X6 261 aa15.82■□□□□ 0.12
SHMT2-230ENST00000557427 SPINK5Q9NQ38 1064 aaPredicted RBP15.82■□□□□ 0.12
SHMT2-230ENST00000557427 MTMR10Q9NXD2 777 aa15.82■□□□□ 0.12
SHMT2-230ENST00000557427 PPP4R2Q9NY27 417 aa15.82■□□□□ 0.12
SHMT2-230ENST00000557427 RIPOR2Q9Y4F9 1068 aa15.82■□□□□ 0.12
SHMT2-230ENST00000557427 EVI5O60447 810 aa15.81■□□□□ 0.12
SHMT2-230ENST00000557427 FARP2O94887 1054 aaPredicted RBP15.81■□□□□ 0.12
SHMT2-230ENST00000557427 DDX58O95786 925 aaKnown RBP15.81■□□□□ 0.12
SHMT2-230ENST00000557427 PSMC4P43686 418 aa15.81■□□□□ 0.12
SHMT2-230ENST00000557427 IRX6P78412 446 aaPredicted RBP15.81■□□□□ 0.12
SHMT2-230ENST00000557427 MAP3K9P80192 1104 aa15.81■□□□□ 0.12
SHMT2-230ENST00000557427 EXOSC9Q06265 439 aaKnown RBP15.81■□□□□ 0.12
SHMT2-230ENST00000557427 U2AF1L4Q8WU68 220 aaKnown RBP15.81■□□□□ 0.12
SHMT2-230ENST00000557427 FANCIQ9NVI1 1328 aa15.8■□□□□ 0.12
SHMT2-230ENST00000557427 G2E3Q7L622 706 aa15.8■□□□□ 0.12
SHMT2-230ENST00000557427 GDF15Q99988 308 aa15.8■□□□□ 0.12
SHMT2-230ENST00000557427 METTL22Q9BUU2 404 aaPredicted RBP15.8■□□□□ 0.12
SHMT2-230ENST00000557427 ZNF70Q9UC06 446 aaPredicted RBP15.8■□□□□ 0.12
SHMT2-230ENST00000557427 CPA4Q9UI42 421 aa15.8■□□□□ 0.12
SHMT2-230ENST00000557427 JAG2Q9Y219 1238 aa15.8■□□□□ 0.12
SHMT2-230ENST00000557427 SPTBN5Q9NRC6 3674 aaKnown RBP15.79■□□□□ 0.12
SHMT2-230ENST00000557427 SPDYE5A6NIY4 337 aa15.79■□□□□ 0.12
SHMT2-230ENST00000557427 IGKV5-2P06315 115 aa15.79■□□□□ 0.12
SHMT2-230ENST00000557427 SPDYE2Q495Y8 402 aa15.79■□□□□ 0.12
SHMT2-230ENST00000557427 RAET1EQ8TD07 263 aa15.79■□□□□ 0.12
SHMT2-230ENST00000557427 UNC93B1Q9H1C4 597 aa15.79■□□□□ 0.12
SHMT2-230ENST00000557427 ZCCHC17Q9NP64 241 aaKnown RBP15.79■□□□□ 0.12
SHMT2-230ENST00000557427 RCAN3Q9UKA8 241 aa15.79■□□□□ 0.12
SHMT2-230ENST00000557427 MAP3K2Q9Y2U5 619 aa15.79■□□□□ 0.12
SHMT2-230ENST00000557427 SNCAIPQ9Y6H5 919 aa15.79■□□□□ 0.12
SHMT2-230ENST00000557427 ALPK3Q96L96 1907 aa15.78■□□□□ 0.12
SHMT2-230ENST00000557427 PI4KAP2A4QPH2 592 aa15.78■□□□□ 0.12
SHMT2-230ENST00000557427 IRF6O14896 467 aa15.78■□□□□ 0.12
SHMT2-230ENST00000557427 VAMP4O75379 141 aa15.78■□□□□ 0.12
SHMT2-230ENST00000557427 SGPL1O95470 568 aa15.78■□□□□ 0.12
SHMT2-230ENST00000557427 CETPP11597 493 aa15.78■□□□□ 0.12
SHMT2-230ENST00000557427 BMP8BP34820 402 aa15.78■□□□□ 0.12
SHMT2-230ENST00000557427 KSR2Q6VAB6 950 aa15.78■□□□□ 0.12
SHMT2-230ENST00000557427 PI4KAP1Q8N8J0 262 aa15.78■□□□□ 0.12
SHMT2-230ENST00000557427 CDCA7LQ96GN5 454 aa15.78■□□□□ 0.12
SHMT2-230ENST00000557427 TMEM39BQ9GZU3 492 aa15.78■□□□□ 0.12
SHMT2-230ENST00000557427 ANKRD2Q9GZV1 360 aa15.78■□□□□ 0.12
SHMT2-230ENST00000557427 TDRD3Q9H7E2 651 aaKnown RBP15.78■□□□□ 0.12
SHMT2-230ENST00000557427 MYPNQ86TC9 1320 aa15.77■□□□□ 0.12
SHMT2-230ENST00000557427 ADGRA2Q96PE1 1338 aa15.77■□□□□ 0.12
SHMT2-230ENST00000557427 MYH3P11055 1940 aa15.77■□□□□ 0.12
SHMT2-230ENST00000557427 IL1R1P14778 569 aa15.77■□□□□ 0.12
SHMT2-230ENST00000557427 IGHMBP2P38935 993 aaKnown RBP15.77■□□□□ 0.12
SHMT2-230ENST00000557427 RBM5P52756 815 aaKnown RBP eCLIP15.77■□□□□ 0.12
SHMT2-230ENST00000557427 FKBP1AP62942 108 aaKnown RBP15.77■□□□□ 0.12
SHMT2-230ENST00000557427 CHRNDQ07001 517 aa15.77■□□□□ 0.12
SHMT2-230ENST00000557427 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.77■□□□□ 0.12
SHMT2-230ENST00000557427 MYH16Q9H6N6 1097 aa15.77■□□□□ 0.12
SHMT2-230ENST00000557427 FMNL1O95466 1100 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-230ENST00000557427 BCAMP50895 628 aa15.76■□□□□ 0.11
SHMT2-230ENST00000557427 PRKCZQ05513 592 aa15.76■□□□□ 0.11
SHMT2-230ENST00000557427 C15orf52Q6ZUT6 534 aaKnown RBP15.76■□□□□ 0.11
SHMT2-230ENST00000557427 BIN2Q9UBW5 565 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-230ENST00000557427 CSADQ9Y600 493 aa15.76■□□□□ 0.11
SHMT2-230ENST00000557427 TCP10L2B9ZVM9 353 aa15.75■□□□□ 0.11
SHMT2-230ENST00000557427 TAF5LO75529 589 aa15.75■□□□□ 0.11
SHMT2-230ENST00000557427 WDHD1O75717 1129 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-230ENST00000557427 ITGA6P23229 1130 aa15.75■□□□□ 0.11
SHMT2-230ENST00000557427 HOXD10P28358 340 aa15.75■□□□□ 0.11
SHMT2-230ENST00000557427 RRP1P56182 461 aaKnown RBP15.75■□□□□ 0.11
SHMT2-230ENST00000557427 UBXN2AP68543 259 aa15.75■□□□□ 0.11
SHMT2-230ENST00000557427 TNFAIP1Q13829 316 aa15.75■□□□□ 0.11
SHMT2-230ENST00000557427 LRIT3Q3SXY7 679 aa15.75■□□□□ 0.11
SHMT2-230ENST00000557427 ERO1BQ86YB8 467 aa15.75■□□□□ 0.11
SHMT2-230ENST00000557427 HELBQ8NG08 1087 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-230ENST00000557427 ZKSCAN4Q969J2 545 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-230ENST00000557427 GABRQQ9UN88 632 aa15.75■□□□□ 0.11
SHMT2-230ENST00000557427 KCNJ4P48050 445 aa15.74■□□□□ 0.11
SHMT2-230ENST00000557427 SLFN5Q08AF3 891 aa15.74■□□□□ 0.11
SHMT2-230ENST00000557427 NEXNQ0ZGT2 675 aa15.74■□□□□ 0.11
SHMT2-230ENST00000557427 SNAPC2Q13487 334 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms