RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 DZIP1LQ8IYY4 767 aaKnown RBP13.68□□□□□ -0.22
SYNE2-227ENST00000557307 TCP10L2B9ZVM9 353 aa13.67□□□□□ -0.22
SYNE2-227ENST00000557307 USP2O75604 605 aaPredicted RBP13.67□□□□□ -0.22
SYNE2-227ENST00000557307 BCAR3O75815 825 aa13.67□□□□□ -0.22
SYNE2-227ENST00000557307 PUM3Q15397 648 aaKnown RBP13.67□□□□□ -0.22
SYNE2-227ENST00000557307 MAP3K11Q16584 847 aa13.67□□□□□ -0.22
SYNE2-227ENST00000557307 SPRYD7Q5W111 196 aa13.67□□□□□ -0.22
SYNE2-227ENST00000557307 MIER1Q8N108 512 aa13.67□□□□□ -0.22
SYNE2-227ENST00000557307 CNKSR2Q8WXI2 1034 aa13.67□□□□□ -0.22
SYNE2-227ENST00000557307 TMEM39BQ9GZU3 492 aa13.67□□□□□ -0.22
SYNE2-227ENST00000557307 SERPINA10Q9UK55 444 aa13.67□□□□□ -0.22
SYNE2-227ENST00000557307 AK9Q5TCS8 1911 aa13.66□□□□□ -0.22
SYNE2-227ENST00000557307 ADORA1P30542 326 aa13.66□□□□□ -0.22
SYNE2-227ENST00000557307 TM4SF4P48230 202 aa13.66□□□□□ -0.22
SYNE2-227ENST00000557307 VPS37DQ86XT2 251 aa13.66□□□□□ -0.22
SYNE2-227ENST00000557307 WNK4Q96J92 1243 aa13.66□□□□□ -0.22
SYNE2-227ENST00000557307 API5Q9BZZ5 524 aaKnown RBP13.66□□□□□ -0.22
SYNE2-227ENST00000557307 PPP2R3BQ9Y5P8 575 aa13.66□□□□□ -0.22
SYNE2-227ENST00000557307 IGF2BP3O00425 579 aaKnown RBP eCLIP13.65□□□□□ -0.22
SYNE2-227ENST00000557307 MYO1BO43795 1136 aa13.65□□□□□ -0.22
SYNE2-227ENST00000557307 CT47B1P0C2W7 299 aaPredicted RBP13.65□□□□□ -0.22
SYNE2-227ENST00000557307 CAVIN4Q5BKX8 364 aa13.65□□□□□ -0.22
SYNE2-227ENST00000557307 ZNF296Q8WUU4 475 aaPredicted RBP13.65□□□□□ -0.22
SYNE2-227ENST00000557307 KIF16BQ96L93 1317 aa13.64□□□□□ -0.23
SYNE2-227ENST00000557307 CDK5RAP2Q96SN8 1893 aa13.64□□□□□ -0.23
SYNE2-227ENST00000557307 FRAT2O75474 233 aaPredicted RBP13.64□□□□□ -0.23
SYNE2-227ENST00000557307 IFIT1P09914 478 aaKnown RBP13.64□□□□□ -0.23
SYNE2-227ENST00000557307 TRIM27P14373 513 aa13.64□□□□□ -0.23
SYNE2-227ENST00000557307 PRDX5P30044 214 aa13.64□□□□□ -0.23
SYNE2-227ENST00000557307 PHKA1P46020 1223 aa13.64□□□□□ -0.23
SYNE2-227ENST00000557307 INTS3Q68E01 1043 aaKnown RBP13.64□□□□□ -0.23
SYNE2-227ENST00000557307 LPIN2Q92539 896 aa13.64□□□□□ -0.23
SYNE2-227ENST00000557307 ELP3Q9H9T3 547 aa13.64□□□□□ -0.23
SYNE2-227ENST00000557307 CENPFP49454 3210 aa13.64□□□□□ -0.23
SYNE2-227ENST00000557307 CIAO1O76071 339 aa13.63□□□□□ -0.23
SYNE2-227ENST00000557307 SLC5A1P13866 664 aa13.63□□□□□ -0.23
SYNE2-227ENST00000557307 CAP1Q01518 475 aa13.63□□□□□ -0.23
SYNE2-227ENST00000557307 DIXDC1Q155Q3 683 aa13.63□□□□□ -0.23
SYNE2-227ENST00000557307 ATP2B3Q16720 1220 aa13.63□□□□□ -0.23
SYNE2-227ENST00000557307 APOBEC3HQ6NTF7 200 aaKnown RBP13.63□□□□□ -0.23
SYNE2-227ENST00000557307 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.63□□□□□ -0.23
SYNE2-227ENST00000557307 CLUAP1Q96AJ1 413 aa13.63□□□□□ -0.23
SYNE2-227ENST00000557307 GPR25O00155 361 aa13.62□□□□□ -0.23
SYNE2-227ENST00000557307 TBC1D22AQ8WUA7 517 aa13.62□□□□□ -0.23
SYNE2-227ENST00000557307 FRAT1Q92837 279 aaPredicted RBP13.62□□□□□ -0.23
SYNE2-227ENST00000557307 SLC10A4Q96EP9 437 aa13.62□□□□□ -0.23
SYNE2-227ENST00000557307 ZDHHC15Q96MV8 337 aa13.62□□□□□ -0.23
SYNE2-227ENST00000557307 PTPN18Q99952 460 aa13.62□□□□□ -0.23
SYNE2-227ENST00000557307 DAGLAQ9Y4D2 1042 aa13.62□□□□□ -0.23
SYNE2-227ENST00000557307 MAST2Q6P0Q8 1798 aa13.62□□□□□ -0.23
SYNE2-227ENST00000557307 PHIPQ8WWQ0 1821 aa13.62□□□□□ -0.23
SYNE2-227ENST00000557307 PTPRFP10586 1907 aa13.61□□□□□ -0.23
SYNE2-227ENST00000557307 PNMA6EA0A0J9YXQ4 647 aa13.61□□□□□ -0.23
SYNE2-227ENST00000557307 PPP1R12BO60237 982 aaPredicted RBP13.61□□□□□ -0.23
SYNE2-227ENST00000557307 SOX10P56693 466 aa13.61□□□□□ -0.23
SYNE2-227ENST00000557307 VGLL4Q14135 290 aa13.61□□□□□ -0.23
SYNE2-227ENST00000557307 SUPT20HL1Q3ZLR7 823 aa13.61□□□□□ -0.23
SYNE2-227ENST00000557307 CTU1Q7Z7A3 348 aaKnown RBP13.61□□□□□ -0.23
SYNE2-227ENST00000557307 REM2Q8IYK8 340 aaPredicted RBP13.61□□□□□ -0.23
SYNE2-227ENST00000557307 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.61□□□□□ -0.23
SYNE2-227ENST00000557307 TEKT1Q969V4 418 aa13.61□□□□□ -0.23
SYNE2-227ENST00000557307 COPRSQ9NQ92 184 aa13.61□□□□□ -0.23
SYNE2-227ENST00000557307 SIPA1L1O43166 1804 aa13.61□□□□□ -0.23
SYNE2-227ENST00000557307 BRCA2P51587 3418 aa13.6□□□□□ -0.23
SYNE2-227ENST00000557307 ATAD5Q96QE3 1844 aa13.6□□□□□ -0.23
SYNE2-227ENST00000557307 SLURP2P0DP57 97 aa13.6□□□□□ -0.23
SYNE2-227ENST00000557307 ZBTB48P10074 688 aaPredicted RBP13.6□□□□□ -0.23
SYNE2-227ENST00000557307 IREB2P48200 963 aaKnown RBP13.6□□□□□ -0.23
SYNE2-227ENST00000557307 TIMM10P62072 90 aa13.6□□□□□ -0.23
SYNE2-227ENST00000557307 HDLBPQ00341 1268 aaKnown RBP13.6□□□□□ -0.23
SYNE2-227ENST00000557307 HNRNPUQ00839 825 aaKnown RBP eCLIP13.6□□□□□ -0.23
SYNE2-227ENST00000557307 SREBF2Q12772 1141 aa13.6□□□□□ -0.23
SYNE2-227ENST00000557307 TFCP2Q12800 502 aa13.6□□□□□ -0.23
SYNE2-227ENST00000557307 NFIAQ12857 509 aa13.6□□□□□ -0.23
SYNE2-227ENST00000557307 IFNL1Q8IU54 200 aa13.6□□□□□ -0.23
SYNE2-227ENST00000557307 ANKRD13AQ8IZ07 590 aa13.6□□□□□ -0.23
SYNE2-227ENST00000557307 ARHGAP45Q92619 1136 aa13.6□□□□□ -0.23
SYNE2-227ENST00000557307 OPTNQ96CV9 577 aa13.6□□□□□ -0.23
SYNE2-227ENST00000557307 DOCK1Q14185 1865 aa13.59□□□□□ -0.23
SYNE2-227ENST00000557307 MANSC4A6NHS7 340 aaPredicted RBP13.59□□□□□ -0.23
SYNE2-227ENST00000557307 SRGAP3O43295 1099 aa13.59□□□□□ -0.23
SYNE2-227ENST00000557307 IL15P40933 162 aaPredicted RBP13.59□□□□□ -0.23
SYNE2-227ENST00000557307 RGS19P49795 217 aa13.59□□□□□ -0.23
SYNE2-227ENST00000557307 MTX1Q13505 466 aa13.59□□□□□ -0.23
SYNE2-227ENST00000557307 TNFAIP1Q13829 316 aa13.59□□□□□ -0.23
SYNE2-227ENST00000557307 RASGRF1Q13972 1273 aa13.59□□□□□ -0.23
SYNE2-227ENST00000557307 CCDC102BQ68D86 513 aa13.59□□□□□ -0.23
SYNE2-227ENST00000557307 ATF7IPQ6VMQ6 1270 aa13.59□□□□□ -0.23
SYNE2-227ENST00000557307 TMEM57Q8N5G2 664 aa13.59□□□□□ -0.23
SYNE2-227ENST00000557307 MS4A4AQ96JQ5 239 aa13.59□□□□□ -0.23
SYNE2-227ENST00000557307 CFHR5Q9BXR6 569 aa13.59□□□□□ -0.23
SYNE2-227ENST00000557307 CEP126Q9P2H0 1117 aa13.59□□□□□ -0.23
SYNE2-227ENST00000557307 HPS5Q9UPZ3 1129 aa13.59□□□□□ -0.23
SYNE2-227ENST00000557307 SNCAIPQ9Y6H5 919 aa13.59□□□□□ -0.23
SYNE2-227ENST00000557307 FOCADQ5VW36 1801 aa13.59□□□□□ -0.23
SYNE2-227ENST00000557307 RFX7Q2KHR2 1363 aa13.58□□□□□ -0.23
SYNE2-227ENST00000557307 RBBP6Q7Z6E9 1792 aaKnown RBP13.58□□□□□ -0.23
SYNE2-227ENST00000557307 CRHR2Q13324 411 aa13.58□□□□□ -0.24
SYNE2-227ENST00000557307 CDC42EP5Q6NZY7 148 aa13.58□□□□□ -0.24
SYNE2-227ENST00000557307 HHIPL2Q6UWX4 724 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms