RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-223ENST00000557076 EPHA4P54764 986 aa6.94□□□□□ -1.3
SCFD1-223ENST00000557076 SYT9Q86SS6 491 aa6.94□□□□□ -1.3
SCFD1-223ENST00000557076 TRIM50Q86XT4 487 aa6.94□□□□□ -1.3
SCFD1-223ENST00000557076 SLC9A9Q8IVB4 645 aa6.94□□□□□ -1.3
SCFD1-223ENST00000557076 JMYQ8N9B5 988 aa6.94□□□□□ -1.3
SCFD1-223ENST00000557076 ZDHHC1Q8WTX9 485 aa6.94□□□□□ -1.3
SCFD1-223ENST00000557076 TRIM11Q96F44 468 aa6.94□□□□□ -1.3
SCFD1-223ENST00000557076 PLVAPQ9BX97 442 aa6.94□□□□□ -1.3
SCFD1-223ENST00000557076 TFCP2L1Q9NZI6 479 aa6.94□□□□□ -1.3
SCFD1-223ENST00000557076 CD2APQ9Y5K6 639 aa6.94□□□□□ -1.3
SCFD1-223ENST00000557076 WDR17Q8IZU2 1322 aa6.94□□□□□ -1.3
SCFD1-223ENST00000557076 KNDC1Q76NI1 1749 aa6.93□□□□□ -1.3
SCFD1-223ENST00000557076 USP17L5A8MUK1 530 aa6.93□□□□□ -1.3
SCFD1-223ENST00000557076 SIN3BO75182 1162 aa6.93□□□□□ -1.3
SCFD1-223ENST00000557076 TOMM70O94826 608 aa6.93□□□□□ -1.3
SCFD1-223ENST00000557076 TNS4Q8IZW8 715 aa6.93□□□□□ -1.3
SCFD1-223ENST00000557076 ZNF232Q9UNY5 417 aa6.93□□□□□ -1.3
SCFD1-223ENST00000557076 RGPD3A6NKT7 1758 aaPredicted RBP6.92□□□□□ -1.3
SCFD1-223ENST00000557076 RGPD4Q7Z3J3 1758 aa6.92□□□□□ -1.3
SCFD1-223ENST00000557076 TULP4Q9NRJ4 1543 aa6.92□□□□□ -1.3
SCFD1-223ENST00000557076 SERTM1A2A2V5 107 aa6.92□□□□□ -1.3
SCFD1-223ENST00000557076 ADARB2-AS1A8MUL3 147 aa6.92□□□□□ -1.3
SCFD1-223ENST00000557076 ATP1A2P50993 1020 aa6.92□□□□□ -1.3
SCFD1-223ENST00000557076 NEUROD1Q13562 356 aa6.92□□□□□ -1.3
SCFD1-223ENST00000557076 LRRC69Q6ZNQ3 347 aa6.92□□□□□ -1.3
SCFD1-223ENST00000557076 ARHGEF25Q86VW2 580 aa6.92□□□□□ -1.3
SCFD1-223ENST00000557076 ZNF526Q8TF50 670 aaPredicted RBP6.92□□□□□ -1.3
SCFD1-223ENST00000557076 MDFIQ99750 246 aa6.92□□□□□ -1.3
SCFD1-223ENST00000557076 CHMP3Q9Y3E7 222 aa6.92□□□□□ -1.3
SCFD1-223ENST00000557076 PNPLA7Q6ZV29 1317 aa6.92□□□□□ -1.3
SCFD1-223ENST00000557076 SHANK3Q9BYB0 1731 aa6.92□□□□□ -1.3
SCFD1-223ENST00000557076 PEAK1Q9H792 1746 aa6.92□□□□□ -1.3
SCFD1-223ENST00000557076 ADCY9O60503 1353 aa6.92□□□□□ -1.3
SCFD1-223ENST00000557076 BRD4O60885 1362 aaPredicted RBP6.92□□□□□ -1.3
SCFD1-223ENST00000557076 GATA4P43694 442 aa6.91□□□□□ -1.3
SCFD1-223ENST00000557076 PRRT3Q5FWE3 981 aa6.91□□□□□ -1.3
SCFD1-223ENST00000557076 Q8N3U1 123 aa6.91□□□□□ -1.3
SCFD1-223ENST00000557076 RHPN1Q8TCX5 695 aa6.91□□□□□ -1.3
SCFD1-223ENST00000557076 TNFRSF25Q93038 417 aa6.91□□□□□ -1.3
SCFD1-223ENST00000557076 ACSBG1Q96GR2 724 aa6.91□□□□□ -1.3
SCFD1-223ENST00000557076 USP6P35125 1406 aa6.91□□□□□ -1.3
SCFD1-223ENST00000557076 PARP4Q9UKK3 1724 aaKnown RBP6.9□□□□□ -1.3
SCFD1-223ENST00000557076 RAD21O60216 631 aa6.9□□□□□ -1.3
SCFD1-223ENST00000557076 HMGB2P26583 209 aaKnown RBP6.9□□□□□ -1.3
SCFD1-223ENST00000557076 PSMA6P60900 246 aaKnown RBP6.9□□□□□ -1.3
SCFD1-223ENST00000557076 C1orf53Q5VUE5 145 aa6.9□□□□□ -1.3
SCFD1-223ENST00000557076 PLEKHM2Q8IWE5 1019 aa6.9□□□□□ -1.3
SCFD1-223ENST00000557076 DEPDC4Q8N2C3 294 aa6.9□□□□□ -1.3
SCFD1-223ENST00000557076 ANKIB1Q9P2G1 1089 aa6.9□□□□□ -1.3
SCFD1-223ENST00000557076 ZBTB7CA1YPR0 619 aa6.89□□□□□ -1.31
SCFD1-223ENST00000557076 HIRAP54198 1017 aaPredicted RBP6.89□□□□□ -1.31
SCFD1-223ENST00000557076 DOC2BQ14184 412 aa6.89□□□□□ -1.31
SCFD1-223ENST00000557076 KCNH5Q8NCM2 988 aa6.89□□□□□ -1.31
SCFD1-223ENST00000557076 TPCN2Q8NHX9 752 aa6.89□□□□□ -1.31
SCFD1-223ENST00000557076 C7orf43Q8WVR3 580 aa6.89□□□□□ -1.31
SCFD1-223ENST00000557076 PRDM6Q9NQX0 595 aa6.89□□□□□ -1.31
SCFD1-223ENST00000557076 LMO7Q8WWI1 1683 aa6.89□□□□□ -1.31
SCFD1-223ENST00000557076 IFT172Q9UG01 1749 aa6.89□□□□□ -1.31
SCFD1-223ENST00000557076 CRYBG1Q9Y4K1 1723 aa6.89□□□□□ -1.31
SCFD1-223ENST00000557076 SBF2Q86WG5 1849 aa6.89□□□□□ -1.31
SCFD1-223ENST00000557076 CCDC7Q96M83 1385 aa6.88□□□□□ -1.31
SCFD1-223ENST00000557076 M0R2N6 131 aa6.88□□□□□ -1.31
SCFD1-223ENST00000557076 TBCELQ5QJ74 424 aa6.88□□□□□ -1.31
SCFD1-223ENST00000557076 CCDC102BQ68D86 513 aa6.88□□□□□ -1.31
SCFD1-223ENST00000557076 COL23A1Q86Y22 540 aaPredicted RBP6.88□□□□□ -1.31
SCFD1-223ENST00000557076 NACC1Q96RE7 527 aa6.88□□□□□ -1.31
SCFD1-223ENST00000557076 USP17L3A6NCW0 530 aa6.87□□□□□ -1.31
SCFD1-223ENST00000557076 USP17L4A6NCW7 530 aa6.87□□□□□ -1.31
SCFD1-223ENST00000557076 M0R082 166 aa6.87□□□□□ -1.31
SCFD1-223ENST00000557076 IL2RBP14784 551 aa6.87□□□□□ -1.31
SCFD1-223ENST00000557076 SPEM2Q0P670 501 aa6.87□□□□□ -1.31
SCFD1-223ENST00000557076 FSTL1Q12841 308 aa6.87□□□□□ -1.31
SCFD1-223ENST00000557076 SFSWAPQ12872 951 aaKnown RBP6.87□□□□□ -1.31
SCFD1-223ENST00000557076 USP17L2Q6R6M4 530 aa6.87□□□□□ -1.31
SCFD1-223ENST00000557076 USP17L1Q7RTZ2 530 aa6.87□□□□□ -1.31
SCFD1-223ENST00000557076 FLAD1Q8NFF5 587 aa6.87□□□□□ -1.31
SCFD1-223ENST00000557076 ZNF417Q8TAU3 575 aa6.87□□□□□ -1.31
SCFD1-223ENST00000557076 ZNF587Q96SQ5 575 aaPredicted RBP6.87□□□□□ -1.31
SCFD1-223ENST00000557076 SLC30A3Q99726 388 aa6.87□□□□□ -1.31
SCFD1-223ENST00000557076 SEMA6BQ9H3T3 888 aa6.87□□□□□ -1.31
SCFD1-223ENST00000557076 BRD7Q9NPI1 651 aa6.87□□□□□ -1.31
SCFD1-223ENST00000557076 WWC3Q9ULE0 1092 aa6.87□□□□□ -1.31
SCFD1-223ENST00000557076 ADGRB1O14514 1584 aa6.86□□□□□ -1.31
SCFD1-223ENST00000557076 ZBTB7BO15156 539 aaPredicted RBP6.86□□□□□ -1.31
SCFD1-223ENST00000557076 ADH7P40394 386 aa6.86□□□□□ -1.31
SCFD1-223ENST00000557076 KCNQ4P56696 695 aa6.86□□□□□ -1.31
SCFD1-223ENST00000557076 FLIIQ13045 1269 aa6.86□□□□□ -1.31
SCFD1-223ENST00000557076 HIF1AQ16665 826 aa6.86□□□□□ -1.31
SCFD1-223ENST00000557076 SH3PXD2AQ5TCZ1 1133 aa6.86□□□□□ -1.31
SCFD1-223ENST00000557076 LARGE2Q8N3Y3 721 aa6.86□□□□□ -1.31
SCFD1-223ENST00000557076 DCAF11Q8TEB1 546 aa6.86□□□□□ -1.31
SCFD1-223ENST00000557076 POM121Q96HA1 1249 aa6.86□□□□□ -1.31
SCFD1-223ENST00000557076 CEP63Q96MT8 703 aa6.86□□□□□ -1.31
SCFD1-223ENST00000557076 TSPAN10Q9H1Z9 355 aaPredicted RBP6.86□□□□□ -1.31
SCFD1-223ENST00000557076 KIAA1024Q9UPX6 916 aa6.86□□□□□ -1.31
SCFD1-223ENST00000557076 RBM19Q9Y4C8 960 aaKnown RBP6.86□□□□□ -1.31
SCFD1-223ENST00000557076 PHRF1Q9P1Y6 1649 aaKnown RBP6.86□□□□□ -1.31
SCFD1-223ENST00000557076 PALM3A6NDB9 673 aaPredicted RBP6.85□□□□□ -1.31
SCFD1-223ENST00000557076 ATP9BO43861 1147 aa6.85□□□□□ -1.31
SCFD1-223ENST00000557076 SRPK2P78362 688 aaKnown RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms