RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 SLC39A2Q9NP94 309 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 RTEL1Q9NZ71 1219 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 MYOM1P52179 1685 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 RPSAP08865 295 aaKnown RBP15.74■□□□□ 0.11
SHMT2-226ENST00000556825 ALDH1B1P30837 517 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 CCDC178Q5BJE1 867 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 FAM81AQ8TBF8 368 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 ARHGAP45Q92619 1136 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 RANBP17Q9H2T7 1088 aaKnown RBP15.74■□□□□ 0.11
SHMT2-226ENST00000556825 PCDHGC5Q9Y5F6 944 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 SSH2Q76I76 1423 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 TSPOAP1O95153 1857 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 SPDYE3A6NKU9 549 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 ZEB2O60315 1214 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 CUTAO60888 179 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 WDHD1O75717 1129 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-226ENST00000556825 FMNL1O95466 1100 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-226ENST00000556825 PDHBP11177 359 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 USP4Q13107 963 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 MICALCLQ6ZW33 695 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 ACRBPQ8NEB7 543 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 NUP133Q8WUM0 1156 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 CAPS2Q9BXY5 557 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 STAG3Q9UJ98 1225 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 TPCN1Q9ULQ1 816 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 LIMCH1Q9UPQ0 1083 aa15.74■□□□□ 0.11
SHMT2-226ENST00000556825 KDRP35968 1356 aa15.73■□□□□ 0.11
SHMT2-226ENST00000556825 DIP2BQ9P265 1576 aa15.73■□□□□ 0.11
SHMT2-226ENST00000556825 ERICH2A1L162 156 aa15.73■□□□□ 0.11
SHMT2-226ENST00000556825 PPP1R12BO60237 982 aaPredicted RBP15.73■□□□□ 0.11
SHMT2-226ENST00000556825 GJB2P29033 226 aa15.73■□□□□ 0.11
SHMT2-226ENST00000556825 EPAS1Q99814 870 aa15.73■□□□□ 0.11
SHMT2-226ENST00000556825 SAMM50Q9Y512 469 aa15.73■□□□□ 0.11
SHMT2-226ENST00000556825 DIP2CQ9Y2E4 1556 aa15.73■□□□□ 0.11
SHMT2-226ENST00000556825 VSNL1P62760 191 aa15.72■□□□□ 0.11
SHMT2-226ENST00000556825 DDX46Q7L014 1031 aaKnown RBP15.72■□□□□ 0.11
SHMT2-226ENST00000556825 ILDR1Q86SU0 546 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-226ENST00000556825 FAM177A1Q8N128 213 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-226ENST00000556825 PAGR1Q9BTK6 254 aa15.72■□□□□ 0.11
SHMT2-226ENST00000556825 NEURL4Q96JN8 1562 aa15.72■□□□□ 0.11
SHMT2-226ENST00000556825 GRIN2DO15399 1336 aa15.72■□□□□ 0.11
SHMT2-226ENST00000556825 LZTS2Q9BRK4 669 aa15.72■□□□□ 0.11
SHMT2-226ENST00000556825 ANO10Q9NW15 660 aa15.72■□□□□ 0.11
SHMT2-226ENST00000556825 CORO1CQ9ULV4 474 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-226ENST00000556825 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.72■□□□□ 0.11
SHMT2-226ENST00000556825 UGGT1Q9NYU2 1555 aa15.72■□□□□ 0.11
SHMT2-226ENST00000556825 RBM47A0AV96 593 aaKnown RBP15.71■□□□□ 0.11
SHMT2-226ENST00000556825 SMNDC1O75940 238 aaKnown RBP eCLIP15.71■□□□□ 0.116e-6■□□□□ 8.8
SHMT2-226ENST00000556825 GCLCP48506 637 aaPredicted RBP15.71■□□□□ 0.11
SHMT2-226ENST00000556825 RASA3Q14644 834 aa15.71■□□□□ 0.11
SHMT2-226ENST00000556825 ARHGAP22Q7Z5H3 698 aa15.71■□□□□ 0.11
SHMT2-226ENST00000556825 XPO4Q9C0E2 1151 aaKnown RBP15.71■□□□□ 0.11
SHMT2-226ENST00000556825 PPP2R2CQ9Y2T4 447 aa15.71■□□□□ 0.11
SHMT2-226ENST00000556825 U3KPZ7 1027 aaPredicted RBP15.71■□□□□ 0.11
SHMT2-226ENST00000556825 ADGRB2O60241 1585 aa15.71■□□□□ 0.11
SHMT2-226ENST00000556825 VPS37CA5D8V6 355 aaPredicted RBP15.71■□□□□ 0.1
SHMT2-226ENST00000556825 MYL1P05976 194 aa15.71■□□□□ 0.1
SHMT2-226ENST00000556825 PAPOLAP51003 745 aaKnown RBP15.71■□□□□ 0.1
SHMT2-226ENST00000556825 ROR2Q01974 943 aaKnown RBP15.71■□□□□ 0.1
SHMT2-226ENST00000556825 E2F5Q15329 346 aa15.71■□□□□ 0.1
SHMT2-226ENST00000556825 HDGFL1Q5TGJ6 251 aa15.71■□□□□ 0.1
SHMT2-226ENST00000556825 BZW1Q7L1Q6 419 aaKnown RBP15.71■□□□□ 0.1
SHMT2-226ENST00000556825 SDCCAG8Q86SQ7 713 aaPredicted RBP15.71■□□□□ 0.1
SHMT2-226ENST00000556825 TRIM42Q8IWZ5 723 aa15.71■□□□□ 0.1
SHMT2-226ENST00000556825 CCDC13Q8IYE1 715 aa15.71■□□□□ 0.1
SHMT2-226ENST00000556825 SPATA32Q96LK8 384 aa15.71■□□□□ 0.1
SHMT2-226ENST00000556825 TTC14Q96N46 770 aa15.71■□□□□ 0.1
SHMT2-226ENST00000556825 ZSWIM4Q9H7M6 989 aa15.71■□□□□ 0.1
SHMT2-226ENST00000556825 ANO2Q9NQ90 1003 aa15.71■□□□□ 0.1
SHMT2-226ENST00000556825 TPD52L2O43399 206 aaKnown RBP15.7■□□□□ 0.1
SHMT2-226ENST00000556825 SLC4A2P04920 1241 aa15.7■□□□□ 0.1
SHMT2-226ENST00000556825 DRP2Q13474 957 aa15.7■□□□□ 0.1
SHMT2-226ENST00000556825 DCTN1Q14203 1278 aa15.7■□□□□ 0.1
SHMT2-226ENST00000556825 HSP90AB2PQ58FF8 381 aa15.7■□□□□ 0.1
SHMT2-226ENST00000556825 PRPF40BQ6NWY9 871 aaKnown RBP15.7■□□□□ 0.1
SHMT2-226ENST00000556825 CYB5D1Q6P9G0 228 aa15.7■□□□□ 0.1
SHMT2-226ENST00000556825 AOPEPQ8N6M6 819 aa15.7■□□□□ 0.1
SHMT2-226ENST00000556825 PROCA1Q8NCQ7 364 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-226ENST00000556825 TRIM58Q8NG06 486 aa15.7■□□□□ 0.1
SHMT2-226ENST00000556825 ALS2CR12Q96Q35 445 aa15.7■□□□□ 0.1
SHMT2-226ENST00000556825 IQCGQ9H095 443 aaKnown RBP15.7■□□□□ 0.1
SHMT2-226ENST00000556825 EHD4Q9H223 541 aa15.7■□□□□ 0.1
SHMT2-226ENST00000556825 OSBPL3Q9H4L5 887 aa15.7■□□□□ 0.1
SHMT2-226ENST00000556825 TRPC6Q9Y210 931 aa15.7■□□□□ 0.1
SHMT2-226ENST00000556825 EVC2Q86UK5 1308 aa15.7■□□□□ 0.1
SHMT2-226ENST00000556825 A6NNZ2 444 aa15.7■□□□□ 0.1
SHMT2-226ENST00000556825 PDE6BP35913 854 aa15.7■□□□□ 0.1
SHMT2-226ENST00000556825 GNGT1P63211 74 aa15.7■□□□□ 0.1
SHMT2-226ENST00000556825 TUBB8Q3ZCM7 444 aa15.7■□□□□ 0.1
SHMT2-226ENST00000556825 CEP57L1Q8IYX8 460 aa15.7■□□□□ 0.1
SHMT2-226ENST00000556825 TPX2Q9ULW0 747 aaKnown RBP15.7■□□□□ 0.1
SHMT2-226ENST00000556825 PTCH1Q13635 1447 aa15.69■□□□□ 0.1
SHMT2-226ENST00000556825 ZNF202O95125 648 aa15.69■□□□□ 0.1
SHMT2-226ENST00000556825 FERP16591 822 aa15.69■□□□□ 0.1
SHMT2-226ENST00000556825 ATP5JP18859 108 aa15.69■□□□□ 0.1
SHMT2-226ENST00000556825 DBN1Q16643 649 aa15.69■□□□□ 0.1
SHMT2-226ENST00000556825 RUFY3Q7L099 469 aa15.69■□□□□ 0.1
SHMT2-226ENST00000556825 LEO1Q8WVC0 666 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-226ENST00000556825 SCLT1Q96NL6 688 aa15.69■□□□□ 0.1
SHMT2-226ENST00000556825 SPAG5Q96R06 1193 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms