RNA–Protein interactions for RNA: ENST00000556778.5

PRKCH-222, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-222	ENST00000556778		F8W031	263 aa	Predicted RBP	10.9	□□□□□ -0.66
PRKCH-222	ENST00000556778	SLC5A1	P13866	664 aa		10.9	□□□□□ -0.66
PRKCH-222	ENST00000556778	CHAF1A	Q13111	956 aa	Predicted RBP	10.9	□□□□□ -0.66
PRKCH-222	ENST00000556778	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	10.9	□□□□□ -0.66
PRKCH-222	ENST00000556778	STRIP1	Q5VSL9	837 aa		10.9	□□□□□ -0.66
PRKCH-222	ENST00000556778	KIAA0825	Q8IV33	1275 aa		10.9	□□□□□ -0.66
PRKCH-222	ENST00000556778	EAF2	Q96CJ1	260 aa	Predicted RBP	10.9	□□□□□ -0.66
PRKCH-222	ENST00000556778	CCDC8	Q9H0W5	538 aa	Predicted RBP	10.9	□□□□□ -0.66
PRKCH-222	ENST00000556778	IL1RAPL2	Q9NP60	686 aa		10.9	□□□□□ -0.66
PRKCH-222	ENST00000556778	TLR7	Q9NYK1	1049 aa	Known RBP	10.9	□□□□□ -0.66
PRKCH-222	ENST00000556778	SCAF8	Q9UPN6	1271 aa	Known RBP	10.9	□□□□□ -0.66
PRKCH-222	ENST00000556778	SMARCA5	O60264	1052 aa	Predicted RBP	10.89	□□□□□ -0.67
PRKCH-222	ENST00000556778	FMR1	Q06787	632 aa	Known RBP eCLIP	10.89	□□□□□ -0.67
PRKCH-222	ENST00000556778	TNNI3K	Q59H18	835 aa		10.89	□□□□□ -0.67
PRKCH-222	ENST00000556778	CAVIN4	Q5BKX8	364 aa		10.89	□□□□□ -0.67
PRKCH-222	ENST00000556778	CCDC102B	Q68D86	513 aa		10.89	□□□□□ -0.67
PRKCH-222	ENST00000556778	VPS37D	Q86XT2	251 aa		10.89	□□□□□ -0.67
PRKCH-222	ENST00000556778	DBNDD2	Q9BQY9	259 aa		10.89	□□□□□ -0.67
PRKCH-222	ENST00000556778	FPGT-TNNI3K	V9GXZ4	949 aa		10.89	□□□□□ -0.67
PRKCH-222	ENST00000556778	SBF1	O95248	1867 aa		10.89	□□□□□ -0.67
PRKCH-222	ENST00000556778	IQCA1L	A6NCM1	817 aa		10.88	□□□□□ -0.67
PRKCH-222	ENST00000556778	TOMM70	O94826	608 aa		10.88	□□□□□ -0.67
PRKCH-222	ENST00000556778	USP17L8	P0C7I0	530 aa		10.88	□□□□□ -0.67
PRKCH-222	ENST00000556778	LMOD1	P29536	600 aa	Predicted RBP	10.88	□□□□□ -0.67
PRKCH-222	ENST00000556778	SCARF1	Q14162	830 aa		10.88	□□□□□ -0.67
PRKCH-222	ENST00000556778	MAP1S	Q66K74	1059 aa	Predicted RBP	10.88	□□□□□ -0.67
PRKCH-222	ENST00000556778	PI16	Q6UXB8	463 aa		10.88	□□□□□ -0.67
PRKCH-222	ENST00000556778	C16orf71	Q8IYS4	520 aa	Predicted RBP	10.88	□□□□□ -0.67
PRKCH-222	ENST00000556778	RHPN1	Q8TCX5	695 aa		10.88	□□□□□ -0.67
PRKCH-222	ENST00000556778	DPF2	Q92785	391 aa		10.88	□□□□□ -0.67
PRKCH-222	ENST00000556778	CHMP4B	Q9H444	224 aa	Known RBP	10.88	□□□□□ -0.67
PRKCH-222	ENST00000556778	AOX1	Q06278	1338 aa		10.87	□□□□□ -0.67
PRKCH-222	ENST00000556778		H7C1D1	291 aa		10.87	□□□□□ -0.67
PRKCH-222	ENST00000556778	FRAT2	O75474	233 aa	Predicted RBP	10.87	□□□□□ -0.67
PRKCH-222	ENST00000556778	IGHD	P01880	384 aa		10.87	□□□□□ -0.67
PRKCH-222	ENST00000556778	ZNF280A	P59817	542 aa	Predicted RBP	10.87	□□□□□ -0.67
PRKCH-222	ENST00000556778	C1QTNF8	P60827	252 aa		10.87	□□□□□ -0.67
PRKCH-222	ENST00000556778	AGBL3	Q8NEM8	1001 aa		10.87	□□□□□ -0.67
PRKCH-222	ENST00000556778	FAM163A	Q96GL9	167 aa	Predicted RBP	10.87	□□□□□ -0.67
PRKCH-222	ENST00000556778	ADARB2	Q9NS39	739 aa	Known RBP	10.87	□□□□□ -0.67
PRKCH-222	ENST00000556778	DBNL	Q9UJU6	430 aa	Known RBP	10.87	□□□□□ -0.67
PRKCH-222	ENST00000556778	AKAP2	Q9Y2D5	859 aa		10.87	□□□□□ -0.67
PRKCH-222	ENST00000556778	TIAM2	Q8IVF5	1701 aa		10.87	□□□□□ -0.67
PRKCH-222	ENST00000556778	FAM205A	Q6ZU69	1335 aa		10.86	□□□□□ -0.67
PRKCH-222	ENST00000556778	SPEF2	Q9C093	1822 aa		10.86	□□□□□ -0.67
PRKCH-222	ENST00000556778	C2orf72	A6NCS6	295 aa		10.86	□□□□□ -0.67
PRKCH-222	ENST00000556778	HMMR	O75330	724 aa		10.86	□□□□□ -0.67
PRKCH-222	ENST00000556778	HOXB3	P14651	431 aa	Predicted RBP	10.86	□□□□□ -0.67
PRKCH-222	ENST00000556778	RPS12	P25398	132 aa	Known RBP	10.86	□□□□□ -0.67
PRKCH-222	ENST00000556778	HTRA3	P83110	453 aa		10.86	□□□□□ -0.67
PRKCH-222	ENST00000556778	RASGRF1	Q13972	1273 aa		10.86	□□□□□ -0.67
PRKCH-222	ENST00000556778	NBPF9	Q3BBW0	867 aa		10.86	□□□□□ -0.67
PRKCH-222	ENST00000556778	MFSD14B	Q5SR56	506 aa		10.86	□□□□□ -0.67
PRKCH-222	ENST00000556778	TBC1D9	Q6ZT07	1266 aa		10.86	□□□□□ -0.67
PRKCH-222	ENST00000556778	AACS	Q86V21	672 aa		10.86	□□□□□ -0.67
PRKCH-222	ENST00000556778	DCTPP1	Q9H773	170 aa		10.86	□□□□□ -0.67
PRKCH-222	ENST00000556778	MYOZ2	Q9NPC6	264 aa		10.86	□□□□□ -0.67
PRKCH-222	ENST00000556778	SNRK	Q9NRH2	765 aa		10.86	□□□□□ -0.67
PRKCH-222	ENST00000556778	NDUFB9	Q9Y6M9	179 aa		10.86	□□□□□ -0.67
PRKCH-222	ENST00000556778	COL1A1	P02452	1464 aa	Predicted RBP	10.86	□□□□□ -0.67
PRKCH-222	ENST00000556778	TRAF5	O00463	557 aa		10.85	□□□□□ -0.67
PRKCH-222	ENST00000556778	SNPH	O15079	494 aa		10.85	□□□□□ -0.67
PRKCH-222	ENST00000556778	ST18	O60284	1047 aa		10.85	□□□□□ -0.67
PRKCH-222	ENST00000556778	ITGBL1	O95965	494 aa	Predicted RBP	10.85	□□□□□ -0.67
PRKCH-222	ENST00000556778	GORAB	Q5T7V8	394 aa		10.85	□□□□□ -0.67
PRKCH-222	ENST00000556778	USP50	Q70EL3	339 aa	Predicted RBP	10.85	□□□□□ -0.67
PRKCH-222	ENST00000556778	PNMA8A	Q86V59	439 aa	Predicted RBP	10.85	□□□□□ -0.67
PRKCH-222	ENST00000556778	CNTROB	Q8N137	903 aa		10.85	□□□□□ -0.67
PRKCH-222	ENST00000556778	RBM46	Q8TBY0	533 aa	Known RBP	10.85	□□□□□ -0.67
PRKCH-222	ENST00000556778	GPR108	Q9NPR9	543 aa		10.85	□□□□□ -0.67
PRKCH-222	ENST00000556778	HMG20B	Q9P0W2	317 aa		10.85	□□□□□ -0.67
PRKCH-222	ENST00000556778	MYH3	P11055	1940 aa		10.84	□□□□□ -0.67
PRKCH-222	ENST00000556778	MCAM	P43121	646 aa		10.84	□□□□□ -0.67
PRKCH-222	ENST00000556778	KIF4B	Q2VIQ3	1234 aa		10.84	□□□□□ -0.67
PRKCH-222	ENST00000556778	USP48	Q86UV5	1035 aa		10.84	□□□□□ -0.67
PRKCH-222	ENST00000556778	LDHD	Q86WU2	507 aa		10.84	□□□□□ -0.67
PRKCH-222	ENST00000556778	SMC1B	Q8NDV3	1235 aa		10.84	□□□□□ -0.67
PRKCH-222	ENST00000556778	PRMT6	Q96LA8	375 aa	Predicted RBP	10.84	□□□□□ -0.67
PRKCH-222	ENST00000556778	GLIS2	Q9BZE0	524 aa	Predicted RBP	10.84	□□□□□ -0.67
PRKCH-222	ENST00000556778	PGAP2	Q9UHJ9	254 aa		10.84	□□□□□ -0.67
PRKCH-222	ENST00000556778	TTF2	Q9UNY4	1162 aa	Known RBP	10.84	□□□□□ -0.67
PRKCH-222	ENST00000556778	CHD4	Q14839	1912 aa		10.84	□□□□□ -0.67
PRKCH-222	ENST00000556778	WDR90	Q96KV7	1748 aa		10.84	□□□□□ -0.67
PRKCH-222	ENST00000556778	ZNF609	O15014	1411 aa		10.84	□□□□□ -0.67
PRKCH-222	ENST00000556778	ADM5	C9JUS6	153 aa		10.83	□□□□□ -0.68
PRKCH-222	ENST00000556778	WNT10B	O00744	389 aa		10.83	□□□□□ -0.68
PRKCH-222	ENST00000556778	RAB11FIP3	O75154	756 aa		10.83	□□□□□ -0.68
PRKCH-222	ENST00000556778	PRDX5	P30044	214 aa		10.83	□□□□□ -0.68
PRKCH-222	ENST00000556778	CFAP100	Q494V2	611 aa		10.83	□□□□□ -0.68
PRKCH-222	ENST00000556778	ANGEL2	Q5VTE6	544 aa	Known RBP	10.83	□□□□□ -0.68
PRKCH-222	ENST00000556778	PRAMEF18	Q5VWM3	479 aa		10.83	□□□□□ -0.68
PRKCH-222	ENST00000556778	ERC1	Q8IUD2	1116 aa		10.83	□□□□□ -0.68
PRKCH-222	ENST00000556778	OGFOD1	Q8N543	542 aa		10.83	□□□□□ -0.68
PRKCH-222	ENST00000556778	SPATA5	Q8NB90	893 aa		10.83	□□□□□ -0.68
PRKCH-222	ENST00000556778	OTUD7A	Q8TE49	926 aa	Predicted RBP	10.83	□□□□□ -0.68
PRKCH-222	ENST00000556778	KIF1BP	Q96EK5	621 aa		10.83	□□□□□ -0.68
PRKCH-222	ENST00000556778	GNL3L	Q9NVN8	582 aa	Known RBP	10.83	□□□□□ -0.68
PRKCH-222	ENST00000556778	ARID4A	P29374	1257 aa	Predicted RBP	10.82	□□□□□ -0.68
PRKCH-222	ENST00000556778	RBM5	P52756	815 aa	Known RBP eCLIP	10.82	□□□□□ -0.68
PRKCH-222	ENST00000556778	FKBP1A	P62942	108 aa	Known RBP	10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms