RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 ZNF804BA4D1E1 1349 aa13.73□□□□□ -0.21
SYNE2-221ENST00000556342 H7C1W4 665 aa13.73□□□□□ -0.21
SYNE2-221ENST00000556342 KLRK1P26718 216 aa13.73□□□□□ -0.21
SYNE2-221ENST00000556342 TTLL5Q6EMB2 1281 aa13.73□□□□□ -0.21
SYNE2-221ENST00000556342 FBXO46Q6PJ61 603 aaPredicted RBP13.73□□□□□ -0.21
SYNE2-221ENST00000556342 APOBEC3FQ8IUX4 373 aaKnown RBP13.73□□□□□ -0.21
SYNE2-221ENST00000556342 KIAA0825Q8IV33 1275 aa13.73□□□□□ -0.21
SYNE2-221ENST00000556342 DDX27Q96GQ7 796 aaKnown RBP13.73□□□□□ -0.21
SYNE2-221ENST00000556342 ZBED3Q96IU2 234 aaPredicted RBP13.73□□□□□ -0.21
SYNE2-221ENST00000556342 CFHR5Q9BXR6 569 aa13.73□□□□□ -0.21
SYNE2-221ENST00000556342 STK31Q9BXU1 1019 aa13.73□□□□□ -0.21
SYNE2-221ENST00000556342 ZNF646O15015 1829 aaPredicted RBP13.72□□□□□ -0.21
SYNE2-221ENST00000556342 PRKG1Q13976 671 aa13.72□□□□□ -0.21
SYNE2-221ENST00000556342 LDLRAD1Q5T700 205 aa13.72□□□□□ -0.21
SYNE2-221ENST00000556342 TSR2Q969E8 191 aaKnown RBP13.72□□□□□ -0.21
SYNE2-221ENST00000556342 PLA2G12BQ9BX93 195 aa13.72□□□□□ -0.21
SYNE2-221ENST00000556342 ANKRD2Q9GZV1 360 aa13.72□□□□□ -0.21
SYNE2-221ENST00000556342 FKTNO75072 461 aa13.71□□□□□ -0.21
SYNE2-221ENST00000556342 ITGA6P23229 1130 aa13.71□□□□□ -0.21
SYNE2-221ENST00000556342 GTF2IP78347 998 aa13.71□□□□□ -0.21
SYNE2-221ENST00000556342 GCKRQ14397 625 aa13.71□□□□□ -0.21
SYNE2-221ENST00000556342 SPRYD7Q5W111 196 aa13.71□□□□□ -0.21
SYNE2-221ENST00000556342 G2E3Q7L622 706 aa13.71□□□□□ -0.21
SYNE2-221ENST00000556342 MPHOSPH8Q99549 860 aa13.71□□□□□ -0.21
SYNE2-221ENST00000556342 R3HDMLQ9H3Y0 253 aa13.71□□□□□ -0.21
SYNE2-221ENST00000556342 ANGEL1Q9UNK9 670 aaKnown RBP13.71□□□□□ -0.21
SYNE2-221ENST00000556342 COL1A1P02452 1464 aaPredicted RBP13.7□□□□□ -0.22
SYNE2-221ENST00000556342 HTTP42858 3142 aa13.7□□□□□ -0.22
SYNE2-221ENST00000556342 SPEF2Q9C093 1822 aa13.7□□□□□ -0.22
SYNE2-221ENST00000556342 KCNJ4P48050 445 aa13.7□□□□□ -0.22
SYNE2-221ENST00000556342 CASP7P55210 303 aa13.7□□□□□ -0.22
SYNE2-221ENST00000556342 CD209Q9NNX6 404 aa13.7□□□□□ -0.22
SYNE2-221ENST00000556342 MYH3P11055 1940 aa13.7□□□□□ -0.22
SYNE2-221ENST00000556342 TBC1D12O60347 775 aa13.69□□□□□ -0.22
SYNE2-221ENST00000556342 ALDH1A1P00352 501 aa13.69□□□□□ -0.22
SYNE2-221ENST00000556342 CSF1RP07333 972 aa13.69□□□□□ -0.22
SYNE2-221ENST00000556342 NUDT7P0C024 238 aa13.69□□□□□ -0.22
SYNE2-221ENST00000556342 CHRNDQ07001 517 aa13.69□□□□□ -0.22
SYNE2-221ENST00000556342 DLGAP5Q15398 846 aa13.69□□□□□ -0.22
SYNE2-221ENST00000556342 MAP3K11Q16584 847 aa13.69□□□□□ -0.22
SYNE2-221ENST00000556342 TWISTNBQ3B726 338 aaPredicted RBP13.69□□□□□ -0.22
SYNE2-221ENST00000556342 CERS5Q8N5B7 392 aa13.69□□□□□ -0.22
SYNE2-221ENST00000556342 DEFB129Q9H1M3 183 aa13.69□□□□□ -0.22
SYNE2-221ENST00000556342 FZD1Q9UP38 647 aa13.69□□□□□ -0.22
SYNE2-221ENST00000556342 ZNF316A6NFI3 1004 aaPredicted RBP13.68□□□□□ -0.22
SYNE2-221ENST00000556342 FLIIQ13045 1269 aa13.68□□□□□ -0.22
SYNE2-221ENST00000556342 VARS2Q5ST30 1063 aaKnown RBP13.68□□□□□ -0.22
SYNE2-221ENST00000556342 MYH16Q9H6N6 1097 aa13.68□□□□□ -0.22
SYNE2-221ENST00000556342 IRS2Q9Y4H2 1338 aa13.67□□□□□ -0.22
SYNE2-221ENST00000556342 SSC5DA1L4H1 1573 aa13.67□□□□□ -0.22
SYNE2-221ENST00000556342 MANSC4A6NHS7 340 aaPredicted RBP13.67□□□□□ -0.22
SYNE2-221ENST00000556342 SNAP23O00161 211 aa13.67□□□□□ -0.22
SYNE2-221ENST00000556342 PPP1R12BO60237 982 aaPredicted RBP13.67□□□□□ -0.22
SYNE2-221ENST00000556342 INHBEP58166 350 aa13.67□□□□□ -0.22
SYNE2-221ENST00000556342 CCDC27Q2M243 656 aa13.67□□□□□ -0.22
SYNE2-221ENST00000556342 C15orf52Q6ZUT6 534 aaKnown RBP13.67□□□□□ -0.22
SYNE2-221ENST00000556342 MTMR14Q8NCE2 650 aa13.67□□□□□ -0.22
SYNE2-221ENST00000556342 LINS1Q8NG48 757 aa13.67□□□□□ -0.22
SYNE2-221ENST00000556342 OXER1Q8TDS5 423 aa13.67□□□□□ -0.22
SYNE2-221ENST00000556342 DNAAF4Q8WXU2 420 aa13.67□□□□□ -0.22
SYNE2-221ENST00000556342 SLC10A4Q96EP9 437 aa13.67□□□□□ -0.22
SYNE2-221ENST00000556342 PPP2R3BQ9Y5P8 575 aa13.67□□□□□ -0.22
SYNE2-221ENST00000556342 MKI67P46013 3256 aaKnown RBP13.66□□□□□ -0.22
SYNE2-221ENST00000556342 ANKRD18BA2A2Z9 1011 aa13.66□□□□□ -0.22
SYNE2-221ENST00000556342 TAF5LO75529 589 aa13.66□□□□□ -0.22
SYNE2-221ENST00000556342 ZBTB48P10074 688 aaPredicted RBP13.66□□□□□ -0.22
SYNE2-221ENST00000556342 FKBP5Q13451 457 aaPredicted RBP13.66□□□□□ -0.22
SYNE2-221ENST00000556342 WWC1Q8IX03 1113 aa13.66□□□□□ -0.22
SYNE2-221ENST00000556342 WNK4Q96J92 1243 aa13.66□□□□□ -0.22
SYNE2-221ENST00000556342 CLMNQ96JQ2 1002 aa13.66□□□□□ -0.22
SYNE2-221ENST00000556342 TRIM17Q9Y577 477 aa13.66□□□□□ -0.22
SYNE2-221ENST00000556342 PCDHAC2Q9Y5I4 1007 aa13.66□□□□□ -0.22
SYNE2-221ENST00000556342 CLRN2A0PK11 232 aa13.65□□□□□ -0.22
SYNE2-221ENST00000556342 IGF2BP3O00425 579 aaKnown RBP eCLIP13.65□□□□□ -0.22
SYNE2-221ENST00000556342 HELBQ8NG08 1087 aaPredicted RBP13.65□□□□□ -0.22
SYNE2-221ENST00000556342 UNCXA6NJT0 531 aa13.64□□□□□ -0.23
SYNE2-221ENST00000556342 F8W031 263 aaPredicted RBP13.64□□□□□ -0.23
SYNE2-221ENST00000556342 MYO1BO43795 1136 aa13.64□□□□□ -0.23
SYNE2-221ENST00000556342 IL1R1P14778 569 aa13.64□□□□□ -0.23
SYNE2-221ENST00000556342 FKBP1AP62942 108 aaKnown RBP13.64□□□□□ -0.23
SYNE2-221ENST00000556342 IFIT5Q13325 482 aaKnown RBP13.64□□□□□ -0.23
SYNE2-221ENST00000556342 SUPT20HL1Q3ZLR7 823 aa13.64□□□□□ -0.23
SYNE2-221ENST00000556342 CFAP100Q494V2 611 aa13.64□□□□□ -0.23
SYNE2-221ENST00000556342 OTOP1Q7RTM1 612 aa13.64□□□□□ -0.23
SYNE2-221ENST00000556342 ZNF804AQ7Z570 1209 aa13.64□□□□□ -0.23
SYNE2-221ENST00000556342 VEZTQ9HBM0 779 aa13.64□□□□□ -0.23
SYNE2-221ENST00000556342 AOX1Q06278 1338 aa13.64□□□□□ -0.23
SYNE2-221ENST00000556342 IL16Q14005 1332 aa13.64□□□□□ -0.23
SYNE2-221ENST00000556342 FOXO4P98177 505 aa13.63□□□□□ -0.23
SYNE2-221ENST00000556342 NBPF12Q5TAG4 269 aaPredicted RBP13.63□□□□□ -0.23
SYNE2-221ENST00000556342 PRMT6Q96LA8 375 aaPredicted RBP13.63□□□□□ -0.23
SYNE2-221ENST00000556342 CENPFP49454 3210 aa13.63□□□□□ -0.23
SYNE2-221ENST00000556342 GJA5P36382 358 aa13.62□□□□□ -0.23
SYNE2-221ENST00000556342 IREB2P48200 963 aaKnown RBP13.62□□□□□ -0.23
SYNE2-221ENST00000556342 INTS3Q68E01 1043 aaKnown RBP13.62□□□□□ -0.23
SYNE2-221ENST00000556342 ZNF687Q8N1G0 1237 aa13.62□□□□□ -0.23
SYNE2-221ENST00000556342 ERO1AQ96HE7 468 aa13.62□□□□□ -0.23
SYNE2-221ENST00000556342 LHX6Q9UPM6 363 aa13.62□□□□□ -0.23
SYNE2-221ENST00000556342 JAG2Q9Y219 1238 aa13.62□□□□□ -0.23
SYNE2-221ENST00000556342 CHMP3Q9Y3E7 222 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms