RNA–Protein interactions for RNA: ENST00000556170.5

NEK9-209, Transcript of NIMA related kinase 9, humanhuman

TSL 5

Gene NEK9, Length 3,975 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-209ENST00000556170 ATG3Q9NT62 314 aa17.17■□□□□ 0.34
NEK9-209ENST00000556170 TNNT3P45378 269 aaPredicted RBP17.17■□□□□ 0.34
NEK9-209ENST00000556170 RTN1Q16799 776 aa17.17■□□□□ 0.34
NEK9-209ENST00000556170 SPATA5Q8NB90 893 aa17.17■□□□□ 0.34
NEK9-209ENST00000556170 WWC3Q9ULE0 1092 aa17.17■□□□□ 0.34
NEK9-209ENST00000556170 IQCA1Q86XH1 822 aa17.16■□□□□ 0.34
NEK9-209ENST00000556170 LPIN2Q92539 896 aa17.16■□□□□ 0.34
NEK9-209ENST00000556170 NRBP1Q9UHY1 535 aa17.16■□□□□ 0.34
NEK9-209ENST00000556170 SFPQP23246 707 aaKnown RBP eCLIP17.16■□□□□ 0.34
NEK9-209ENST00000556170 NBPF5PQ86XG9 351 aaPredicted RBP17.16■□□□□ 0.34
NEK9-209ENST00000556170 SKILP12757 684 aa17.16■□□□□ 0.34
NEK9-209ENST00000556170 PXDNLA1KZ92 1463 aa17.16■□□□□ 0.34
NEK9-209ENST00000556170 MEGF6O75095 1541 aa17.16■□□□□ 0.34
NEK9-209ENST00000556170 NAA16Q6N069 864 aaPredicted RBP17.15■□□□□ 0.34
NEK9-209ENST00000556170 WASF1Q92558 559 aa17.15■□□□□ 0.34
NEK9-209ENST00000556170 TMX1Q9H3N1 280 aa17.15■□□□□ 0.34
NEK9-209ENST00000556170 KCNJ14Q9UNX9 436 aa17.15■□□□□ 0.34
NEK9-209ENST00000556170 MRVI1Q9Y6F6 885 aa17.15■□□□□ 0.34
NEK9-209ENST00000556170 MCAMP43121 646 aa17.15■□□□□ 0.34
NEK9-209ENST00000556170 DZIP1Q86YF9 867 aaKnown RBP17.15■□□□□ 0.34
NEK9-209ENST00000556170 MON2Q7Z3U7 1717 aa17.15■□□□□ 0.34
NEK9-209ENST00000556170 ZNF609O15014 1411 aa17.15■□□□□ 0.34
NEK9-209ENST00000556170 CCDC196A0A1B0GTZ2 297 aa17.15■□□□□ 0.34
NEK9-209ENST00000556170 GYG1P46976 350 aa17.15■□□□□ 0.34
NEK9-209ENST00000556170 PTPN14Q15678 1187 aa17.15■□□□□ 0.34
NEK9-209ENST00000556170 FAM182BQ5T319 152 aa17.15■□□□□ 0.34
NEK9-209ENST00000556170 PGBD1Q96JS3 809 aa17.15■□□□□ 0.34
NEK9-209ENST00000556170 RNF41Q9H4P4 317 aaPredicted RBP17.15■□□□□ 0.34
NEK9-209ENST00000556170 CLIC4Q9Y696 253 aa17.15■□□□□ 0.34
NEK9-209ENST00000556170 ATP2B2Q01814 1243 aa17.14■□□□□ 0.34
NEK9-209ENST00000556170 SDR42E1Q8WUS8 393 aa17.14■□□□□ 0.34
NEK9-209ENST00000556170 CCDC87Q9NVE4 849 aa17.14■□□□□ 0.34
NEK9-209ENST00000556170 PRKAB2O43741 272 aa17.14■□□□□ 0.33
NEK9-209ENST00000556170 USP5P45974 858 aa17.14■□□□□ 0.33
NEK9-209ENST00000556170 SMIM5Q71RC9 77 aa17.14■□□□□ 0.33
NEK9-209ENST00000556170 ZNF274Q96GC6 653 aaPredicted RBP17.14■□□□□ 0.33
NEK9-209ENST00000556170 GPR108Q9NPR9 543 aa17.14■□□□□ 0.33
NEK9-209ENST00000556170 UTYO14607 1347 aa17.14■□□□□ 0.33
NEK9-209ENST00000556170 KDM6AO15550 1401 aaPredicted RBP17.14■□□□□ 0.33
NEK9-209ENST00000556170 FAM98CQ17RN3 349 aaKnown RBP17.14■□□□□ 0.33
NEK9-209ENST00000556170 ANO1Q5XXA6 986 aa17.14■□□□□ 0.33
NEK9-209ENST00000556170 KRT40Q6A162 431 aa17.14■□□□□ 0.33
NEK9-209ENST00000556170 SAMD1Q6SPF0 538 aaPredicted RBP17.14■□□□□ 0.33
NEK9-209ENST00000556170 TFCP2L1Q9NZI6 479 aa17.14■□□□□ 0.33
NEK9-209ENST00000556170 PCDHA7Q9UN72 937 aa17.14■□□□□ 0.33
NEK9-209ENST00000556170 CIAO1O76071 339 aa17.13■□□□□ 0.33
NEK9-209ENST00000556170 RESTQ13127 1097 aa17.13■□□□□ 0.33
NEK9-209ENST00000556170 PIH1D3Q9NQM4 214 aaKnown RBP17.13■□□□□ 0.33
NEK9-209ENST00000556170 TNS3Q68CZ2 1445 aa17.13■□□□□ 0.33
NEK9-209ENST00000556170 SMTNL1A8MU46 457 aa17.13■□□□□ 0.33
NEK9-209ENST00000556170 AFMP43652 599 aa17.13■□□□□ 0.33
NEK9-209ENST00000556170 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.13■□□□□ 0.33
NEK9-209ENST00000556170 V9GYY5 206 aaPredicted RBP17.13■□□□□ 0.33
NEK9-209ENST00000556170 MYSM1Q5VVJ2 828 aa17.13■□□□□ 0.33
NEK9-209ENST00000556170 CTCFLQ8NI51 663 aaPredicted RBP17.13■□□□□ 0.33
NEK9-209ENST00000556170 CPLX3Q8WVH0 158 aa17.13■□□□□ 0.33
NEK9-209ENST00000556170 TMX4Q9H1E5 349 aaPredicted RBP17.13■□□□□ 0.33
NEK9-209ENST00000556170 MKNK2Q9HBH9 465 aa17.13■□□□□ 0.33
NEK9-209ENST00000556170 IFNKQ9P0W0 207 aa17.13■□□□□ 0.33
NEK9-209ENST00000556170 TSPY2A6NKD2 308 aa17.13■□□□□ 0.33
NEK9-209ENST00000556170 CATIPQ7Z7H3 387 aa17.13■□□□□ 0.33
NEK9-209ENST00000556170 PCMTD1Q96MG8 357 aaPredicted RBP17.13■□□□□ 0.33
NEK9-209ENST00000556170 KRT23Q9C075 422 aa17.13■□□□□ 0.33
NEK9-209ENST00000556170 PYCARDQ9ULZ3 195 aa17.13■□□□□ 0.33
NEK9-209ENST00000556170 MAGEB6P1A0A0J9YX57 407 aa17.12■□□□□ 0.33
NEK9-209ENST00000556170 MTERF4Q7Z6M4 381 aaKnown RBP17.12■□□□□ 0.33
NEK9-209ENST00000556170 TMEM87AQ8NBN3 555 aa17.12■□□□□ 0.33
NEK9-209ENST00000556170 PDLIM2Q96JY6 352 aa17.12■□□□□ 0.33
NEK9-209ENST00000556170 ST3GAL1Q11201 340 aa17.12■□□□□ 0.33
NEK9-209ENST00000556170 ZNF500O60304 480 aaPredicted RBP17.12■□□□□ 0.33
NEK9-209ENST00000556170 ZNF75DP51815 510 aa17.12■□□□□ 0.33
NEK9-209ENST00000556170 ESR2Q92731 530 aa17.12■□□□□ 0.33
NEK9-209ENST00000556170 RGPD8O14715 1765 aaPredicted RBP17.11■□□□□ 0.33
NEK9-209ENST00000556170 ZNF202O95125 648 aa17.11■□□□□ 0.33
NEK9-209ENST00000556170 FBXO18Q8NFZ0 1043 aa17.11■□□□□ 0.33
NEK9-209ENST00000556170 NLRP3Q96P20 1036 aa17.11■□□□□ 0.33
NEK9-209ENST00000556170 SETDB2Q96T68 719 aa17.11■□□□□ 0.33
NEK9-209ENST00000556170 CRKLP46109 303 aaKnown RBP17.11■□□□□ 0.33
NEK9-209ENST00000556170 NDUFA8P51970 172 aa17.11■□□□□ 0.33
NEK9-209ENST00000556170 DHX8Q14562 1220 aaKnown RBP17.11■□□□□ 0.33
NEK9-209ENST00000556170 IFIT1BQ5T764 474 aaKnown RBP17.11■□□□□ 0.33
NEK9-209ENST00000556170 IFNL3Q8IZI9 196 aa17.11■□□□□ 0.33
NEK9-209ENST00000556170 MNS1Q8NEH6 495 aa17.11■□□□□ 0.33
NEK9-209ENST00000556170 ISCA1Q9BUE6 129 aa17.11■□□□□ 0.33
NEK9-209ENST00000556170 CABP5Q9NP86 173 aa17.11■□□□□ 0.33
NEK9-209ENST00000556170 STX8Q9UNK0 236 aa17.11■□□□□ 0.33
NEK9-209ENST00000556170 LOC102724428A0A0B4J2F2 783 aa17.1■□□□□ 0.33
NEK9-209ENST00000556170 SIK1P57059 783 aa17.1■□□□□ 0.33
NEK9-209ENST00000556170 NLRP5P59047 1200 aa17.1■□□□□ 0.33
NEK9-209ENST00000556170 CBX1P83916 185 aa17.1■□□□□ 0.33
NEK9-209ENST00000556170 CNNM2Q9H8M5 875 aa17.1■□□□□ 0.33
NEK9-209ENST00000556170 SUSD4Q5VX71 490 aa17.1■□□□□ 0.33
NEK9-209ENST00000556170 BRAPQ7Z569 592 aa17.1■□□□□ 0.33
NEK9-209ENST00000556170 DIS3L2Q8IYB7 885 aaKnown RBP17.1■□□□□ 0.33
NEK9-209ENST00000556170 CLIC6Q96NY7 704 aa17.1■□□□□ 0.33
NEK9-209ENST00000556170 MED23Q9ULK4 1368 aa17.1■□□□□ 0.33
NEK9-209ENST00000556170 TPM1P09493 284 aa17.1■□□□□ 0.33
NEK9-209ENST00000556170 C11orf57Q6ZUT1 292 aaPredicted RBP17.1■□□□□ 0.33
NEK9-209ENST00000556170 VAT1LQ9HCJ6 419 aa17.1■□□□□ 0.33
NEK9-209ENST00000556170 CARMIL3Q8ND23 1372 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms