RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 KRT222Q8N1A0 295 aa12.08□□□□□ -0.48
ACTN1-216ENST00000556083 FBF1Q8TES7 1133 aa12.08□□□□□ -0.48
ACTN1-216ENST00000556083 CFAP57Q96MR6 1250 aa12.08□□□□□ -0.48
ACTN1-216ENST00000556083 MCM9Q9NXL9 1143 aa12.08□□□□□ -0.48
ACTN1-216ENST00000556083 RUFY3Q7L099 469 aa12.08□□□□□ -0.48
ACTN1-216ENST00000556083 FCHSD1Q86WN1 690 aa12.08□□□□□ -0.48
ACTN1-216ENST00000556083 TXNDC16Q9P2K2 825 aa12.08□□□□□ -0.48
ACTN1-216ENST00000556083 PCP11498 1178 aaKnown RBP12.08□□□□□ -0.48
ACTN1-216ENST00000556083 SKILP12757 684 aa12.08□□□□□ -0.48
ACTN1-216ENST00000556083 KRT25Q7Z3Z0 450 aa12.08□□□□□ -0.48
ACTN1-216ENST00000556083 CCDC26Q8TAB7 109 aa12.08□□□□□ -0.48
ACTN1-216ENST00000556083 KCNA6P17658 529 aa12.07□□□□□ -0.48
ACTN1-216ENST00000556083 ZSCAN23Q3MJ62 389 aa12.07□□□□□ -0.48
ACTN1-216ENST00000556083 WDR44Q5JSH3 913 aa12.07□□□□□ -0.48
ACTN1-216ENST00000556083 CEP85Q6P2H3 762 aa12.07□□□□□ -0.48
ACTN1-216ENST00000556083 MAIP1Q8WWC4 291 aa12.07□□□□□ -0.48
ACTN1-216ENST00000556083 STK32BQ9NY57 414 aa12.07□□□□□ -0.48
ACTN1-216ENST00000556083 TSKSQ9UJT2 592 aa12.07□□□□□ -0.48
ACTN1-216ENST00000556083 EPB41P11171 864 aaKnown RBP12.07□□□□□ -0.48
ACTN1-216ENST00000556083 RBM10P98175 930 aaKnown RBP12.07□□□□□ -0.48
ACTN1-216ENST00000556083 CALCOCO2Q13137 446 aa12.07□□□□□ -0.48
ACTN1-216ENST00000556083 UBE4AQ14139 1066 aa12.07□□□□□ -0.48
ACTN1-216ENST00000556083 APPBP2Q92624 585 aa12.07□□□□□ -0.48
ACTN1-216ENST00000556083 METTL22Q9BUU2 404 aaPredicted RBP12.07□□□□□ -0.48
ACTN1-216ENST00000556083 CEBPAP49715 358 aaPredicted RBP12.07□□□□□ -0.48
ACTN1-216ENST00000556083 CFAP58Q5T655 872 aa12.07□□□□□ -0.48
ACTN1-216ENST00000556083 C10orf67Q8IYJ2 551 aa12.07□□□□□ -0.48
ACTN1-216ENST00000556083 MROH5Q6ZUA9 1318 aa12.07□□□□□ -0.48
ACTN1-216ENST00000556083 H0YCG3 227 aa12.07□□□□□ -0.48
ACTN1-216ENST00000556083 CREB3L3Q68CJ9 461 aa12.07□□□□□ -0.48
ACTN1-216ENST00000556083 TICAM2Q86XR7 235 aa12.07□□□□□ -0.48
ACTN1-216ENST00000556083 HACE1Q8IYU2 909 aa12.07□□□□□ -0.48
ACTN1-216ENST00000556083 C16orf45Q96MC5 204 aaPredicted RBP12.07□□□□□ -0.48
ACTN1-216ENST00000556083 BIN1O00499 593 aa12.06□□□□□ -0.48
ACTN1-216ENST00000556083 YWHAEP62258 255 aaKnown RBP12.06□□□□□ -0.48
ACTN1-216ENST00000556083 PPP2R5EQ16537 467 aa12.06□□□□□ -0.48
ACTN1-216ENST00000556083 IFT74Q96LB3 600 aa12.06□□□□□ -0.48
ACTN1-216ENST00000556083 BCCIPQ9P287 314 aaKnown RBP eCLIP12.06□□□□□ -0.48
ACTN1-216ENST00000556083 NUP153P49790 1475 aaKnown RBP12.06□□□□□ -0.48
ACTN1-216ENST00000556083 KIAA0232Q92628 1395 aa12.06□□□□□ -0.48
ACTN1-216ENST00000556083 MYL5Q02045 173 aa12.06□□□□□ -0.48
ACTN1-216ENST00000556083 C20orf194Q5TEA3 1177 aa12.06□□□□□ -0.48
ACTN1-216ENST00000556083 CNBD1Q8NA66 436 aa12.06□□□□□ -0.48
ACTN1-216ENST00000556083 SYCP2Q9BX26 1530 aa12.06□□□□□ -0.48
ACTN1-216ENST00000556083 NMIQ13287 307 aaPredicted RBP12.06□□□□□ -0.48
ACTN1-216ENST00000556083 ERCC6LQ2NKX8 1250 aa12.06□□□□□ -0.48
ACTN1-216ENST00000556083 MLKLQ8NB16 471 aa12.06□□□□□ -0.48
ACTN1-216ENST00000556083 ZBTB40Q9NUA8 1239 aa12.06□□□□□ -0.48
ACTN1-216ENST00000556083 CALUO43852 315 aaPredicted RBP12.05□□□□□ -0.48
ACTN1-216ENST00000556083 FAM160A1Q05DH4 1040 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 MTHFSDQ2M296 383 aaKnown RBP12.05□□□□□ -0.48
ACTN1-216ENST00000556083 RNF187Q5TA31 235 aaPredicted RBP12.05□□□□□ -0.48
ACTN1-216ENST00000556083 SLC5A4Q9NY91 659 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 TTF2Q9UNY4 1162 aaKnown RBP12.05□□□□□ -0.48
ACTN1-216ENST00000556083 ATP6V0A2Q9Y487 856 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 VIMP08670 466 aaKnown RBP12.05□□□□□ -0.48
ACTN1-216ENST00000556083 LIG1P18858 919 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 LIN9Q5TKA1 542 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 C16orf71Q8IYS4 520 aaPredicted RBP12.05□□□□□ -0.48
ACTN1-216ENST00000556083 ANAPC4Q9UJX5 808 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 HOXC9P31274 260 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 SEL1L2Q5TEA6 688 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 TMED8Q6PL24 325 aaPredicted RBP12.05□□□□□ -0.48
ACTN1-216ENST00000556083 MMRN2Q9H8L6 949 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 DACT1Q9NYF0 836 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 FEZ2Q9UHY8 353 aaPredicted RBP12.05□□□□□ -0.48
ACTN1-216ENST00000556083 ATP10AO60312 1499 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 ABCC2Q92887 1545 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 ACTN4O43707 911 aaKnown RBP12.05□□□□□ -0.48
ACTN1-216ENST00000556083 CUTAO60888 179 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 SYT1P21579 422 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 HIBADHP31937 336 aaKnown RBP12.05□□□□□ -0.48
ACTN1-216ENST00000556083 CHRNA2Q15822 529 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 CCDC84Q86UT8 332 aaPredicted RBP12.05□□□□□ -0.48
ACTN1-216ENST00000556083 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.05□□□□□ -0.48
ACTN1-216ENST00000556083 LPIN2Q92539 896 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 TEKT1Q969V4 418 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 PICK1Q9NRD5 415 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 TFCP2L1Q9NZI6 479 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 MRVI1Q9Y6F6 885 aa12.05□□□□□ -0.48
ACTN1-216ENST00000556083 ALDH1B1P30837 517 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 TNFAIP1Q13829 316 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 ANO6Q4KMQ2 910 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 TM6SF1Q9BZW5 370 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 MIS12Q9H081 205 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 NSFL1CQ9UNZ2 370 aaKnown RBP12.04□□□□□ -0.48
ACTN1-216ENST00000556083 STK10O94804 968 aaKnown RBP12.04□□□□□ -0.48
ACTN1-216ENST00000556083 GALNT17Q6IS24 598 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 TMC4Q7Z404 712 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 AFAP1L2Q8N4X5 818 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 PTPDC1A2A3K4 754 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 ERVV-2B6SEH9 535 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 GNA14O95837 355 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 MAP7Q14244 749 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 FNBP1Q96RU3 617 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 IMPACTQ9P2X3 320 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 GGA1Q9UJY5 639 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 CETN3O15182 167 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 CHMLP26374 656 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 TEX11Q8IYF3 940 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms