RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 GORABQ5T7V8 394 aa25.45■■□□□ 1.66
CCDC88C-210ENST00000555995 XAGE2Q96GT9 111 aa25.45■■□□□ 1.66
CCDC88C-210ENST00000555995 NEUROD6Q96NK8 337 aa25.45■■□□□ 1.66
CCDC88C-210ENST00000555995 COG6Q9Y2V7 657 aa25.45■■□□□ 1.66
CCDC88C-210ENST00000555995 HMMRO75330 724 aa25.44■■□□□ 1.66
CCDC88C-210ENST00000555995 MAP2K2P36507 400 aa25.44■■□□□ 1.66
CCDC88C-210ENST00000555995 TIMM10P62072 90 aa25.44■■□□□ 1.66
CCDC88C-210ENST00000555995 HSP90AB4PQ58FF6 505 aa25.44■■□□□ 1.66
CCDC88C-210ENST00000555995 CYP4F22Q6NT55 531 aa25.44■■□□□ 1.66
CCDC88C-210ENST00000555995 ERC1Q8IUD2 1116 aa25.44■■□□□ 1.66
CCDC88C-210ENST00000555995 RPAP2Q8IXW5 612 aaPredicted RBP25.44■■□□□ 1.66
CCDC88C-210ENST00000555995 PRMT6Q96LA8 375 aaPredicted RBP25.44■■□□□ 1.66
CCDC88C-210ENST00000555995 HSPA1AP0DMV8 641 aaKnown RBP25.43■■□□□ 1.66
CCDC88C-210ENST00000555995 HSPA1BP0DMV9 641 aaKnown RBP25.43■■□□□ 1.66
CCDC88C-210ENST00000555995 ADORA1P30542 326 aa25.43■■□□□ 1.66
CCDC88C-210ENST00000555995 SPDYE2Q495Y8 402 aa25.43■■□□□ 1.66
CCDC88C-210ENST00000555995 RGMBQ6NW40 437 aa25.43■■□□□ 1.66
CCDC88C-210ENST00000555995 DLK2Q6UY11 383 aa25.43■■□□□ 1.66
CCDC88C-210ENST00000555995 AIDAQ96BJ3 306 aa25.43■■□□□ 1.66
CCDC88C-210ENST00000555995 DEFB129Q9H1M3 183 aa25.43■■□□□ 1.66
CCDC88C-210ENST00000555995 VEZTQ9HBM0 779 aa25.43■■□□□ 1.66
CCDC88C-210ENST00000555995 LDHBP07195 334 aaKnown RBP25.42■■□□□ 1.66
CCDC88C-210ENST00000555995 TNNI2P48788 182 aa25.42■■□□□ 1.66
CCDC88C-210ENST00000555995 NOGQ13253 232 aa25.42■■□□□ 1.66
CCDC88C-210ENST00000555995 HHIPL2Q6UWX4 724 aa25.42■■□□□ 1.66
CCDC88C-210ENST00000555995 CCDC102AQ96A19 550 aa25.42■■□□□ 1.66
CCDC88C-210ENST00000555995 ZDHHC15Q96MV8 337 aa25.42■■□□□ 1.66
CCDC88C-210ENST00000555995 TMOD2Q9NZR1 351 aa25.42■■□□□ 1.66
CCDC88C-210ENST00000555995 CLRN2A0PK11 232 aa25.41■■□□□ 1.66
CCDC88C-210ENST00000555995 GRM1Q13255 1194 aa25.41■■□□□ 1.66
CCDC88C-210ENST00000555995 SPTY2D1Q68D10 685 aaPredicted RBP25.41■■□□□ 1.66
CCDC88C-210ENST00000555995 ZBTB40Q9NUA8 1239 aa25.41■■□□□ 1.66
CCDC88C-210ENST00000555995 UQCRFS1P1P0C7P4 283 aa25.4■■□□□ 1.66
CCDC88C-210ENST00000555995 RASGRF1Q13972 1273 aa25.4■■□□□ 1.66
CCDC88C-210ENST00000555995 SUPT20HL1Q3ZLR7 823 aa25.4■■□□□ 1.66
CCDC88C-210ENST00000555995 ARMC9Q7Z3E5 817 aa25.4■■□□□ 1.66
CCDC88C-210ENST00000555995 ZNF70Q9UC06 446 aaPredicted RBP25.4■■□□□ 1.66
CCDC88C-210ENST00000555995 TTLL12Q14166 644 aaPredicted RBP25.39■■□□□ 1.66
CCDC88C-210ENST00000555995 TNNI3KQ59H18 835 aa25.39■■□□□ 1.66
CCDC88C-210ENST00000555995 SLF2Q8IX21 1173 aa25.39■■□□□ 1.66
CCDC88C-210ENST00000555995 BEGAINQ9BUH8 593 aa25.39■■□□□ 1.66
CCDC88C-210ENST00000555995 SCAF8Q9UPN6 1271 aaKnown RBP25.39■■□□□ 1.66
CCDC88C-210ENST00000555995 PCDHAC2Q9Y5I4 1007 aa25.39■■□□□ 1.66
CCDC88C-210ENST00000555995 FPGT-TNNI3KV9GXZ4 949 aa25.39■■□□□ 1.66
CCDC88C-210ENST00000555995 ARID4AP29374 1257 aaPredicted RBP25.38■■□□□ 1.65
CCDC88C-210ENST00000555995 ZNF157P51786 506 aaPredicted RBP25.38■■□□□ 1.65
CCDC88C-210ENST00000555995 GRIK5Q16478 980 aa25.38■■□□□ 1.65
CCDC88C-210ENST00000555995 CCDC158Q5M9N0 1113 aa25.38■■□□□ 1.65
CCDC88C-210ENST00000555995 YTHDC1Q96MU7 727 aaKnown RBP25.38■■□□□ 1.65
CCDC88C-210ENST00000555995 TDRD3Q9H7E2 651 aaKnown RBP25.38■■□□□ 1.65
CCDC88C-210ENST00000555995 FKBP1CQ5VVH2 108 aa25.37■■□□□ 1.65
CCDC88C-210ENST00000555995 WBP1LQ9NX94 342 aa25.37■■□□□ 1.65
CCDC88C-210ENST00000555995 MYH2Q9UKX2 1941 aa25.36■■□□□ 1.65
CCDC88C-210ENST00000555995 PPP1R12BO60237 982 aaPredicted RBP25.36■■□□□ 1.65
CCDC88C-210ENST00000555995 PRDX5P30044 214 aa25.36■■□□□ 1.65
CCDC88C-210ENST00000555995 PRAMEF18Q5VWM3 479 aa25.36■■□□□ 1.65
CCDC88C-210ENST00000555995 UNCXA6NJT0 531 aa25.35■■□□□ 1.65
CCDC88C-210ENST00000555995 RASA3Q14644 834 aa25.35■■□□□ 1.65
CCDC88C-210ENST00000555995 DZIP1Q86YF9 867 aaKnown RBP25.35■■□□□ 1.65
CCDC88C-210ENST00000555995 SPATA5Q8NB90 893 aa25.35■■□□□ 1.65
CCDC88C-210ENST00000555995 CA12O43570 354 aa25.34■■□□□ 1.65
CCDC88C-210ENST00000555995 SLC10A3P09131 477 aa25.34■■□□□ 1.65
CCDC88C-210ENST00000555995 TTC39AQ5SRH9 613 aa25.34■■□□□ 1.65
CCDC88C-210ENST00000555995 REM2Q8IYK8 340 aaPredicted RBP25.34■■□□□ 1.65
CCDC88C-210ENST00000555995 HOOK2Q96ED9 719 aa25.34■■□□□ 1.65
CCDC88C-210ENST00000555995 ABCF2Q9UG63 623 aa25.34■■□□□ 1.65
CCDC88C-210ENST00000555995 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.34■■□□□ 1.65
CCDC88C-210ENST00000555995 IGSF3O75054 1194 aa25.33■■□□□ 1.65
CCDC88C-210ENST00000555995 APOBEC3HQ6NTF7 200 aaKnown RBP25.33■■□□□ 1.65
CCDC88C-210ENST00000555995 FAM83AQ86UY5 434 aa25.33■■□□□ 1.65
CCDC88C-210ENST00000555995 ZNF512BQ96KM6 892 aaPredicted RBP25.33■■□□□ 1.65
CCDC88C-210ENST00000555995 EXOC6BQ9Y2D4 811 aa25.33■■□□□ 1.65
CCDC88C-210ENST00000555995 DAGLAQ9Y4D2 1042 aa25.33■■□□□ 1.65
CCDC88C-210ENST00000555995 RPAP1Q9BWH6 1393 aaPredicted RBP25.32■■□□□ 1.64
CCDC88C-210ENST00000555995 MAST2Q6P0Q8 1798 aa25.32■■□□□ 1.64
CCDC88C-210ENST00000555995 AOC2O75106 756 aa25.32■■□□□ 1.64
CCDC88C-210ENST00000555995 CTCFP49711 727 aaPredicted RBP25.32■■□□□ 1.64
CCDC88C-210ENST00000555995 MAP3K11Q16584 847 aa25.32■■□□□ 1.64
CCDC88C-210ENST00000555995 C20orf194Q5TEA3 1177 aa25.32■■□□□ 1.64
CCDC88C-210ENST00000555995 ERICH6Q7L0X2 663 aa25.32■■□□□ 1.64
CCDC88C-210ENST00000555995 HMG20BQ9P0W2 317 aa25.32■■□□□ 1.64
CCDC88C-210ENST00000555995 AOX1Q06278 1338 aa25.32■■□□□ 1.64
CCDC88C-210ENST00000555995 FAM155AB1AL88 458 aaPredicted RBP25.31■■□□□ 1.64
CCDC88C-210ENST00000555995 TCP10L2B9ZVM9 353 aa25.31■■□□□ 1.64
CCDC88C-210ENST00000555995 IREB2P48200 963 aaKnown RBP25.31■■□□□ 1.64
CCDC88C-210ENST00000555995 KIF1BPQ96EK5 621 aa25.31■■□□□ 1.64
CCDC88C-210ENST00000555995 DBNDD2Q9BQY9 259 aa25.31■■□□□ 1.64
CCDC88C-210ENST00000555995 ANGEL1Q9UNK9 670 aaKnown RBP25.31■■□□□ 1.64
CCDC88C-210ENST00000555995 SSC5DA1L4H1 1573 aa25.31■■□□□ 1.64
CCDC88C-210ENST00000555995 UBE2Q2LH0YL09 131 aa25.3■■□□□ 1.64
CCDC88C-210ENST00000555995 RAB11FIP3O75154 756 aa25.3■■□□□ 1.64
CCDC88C-210ENST00000555995 GSTO1P78417 241 aa25.3■■□□□ 1.64
CCDC88C-210ENST00000555995 DIXDC1Q155Q3 683 aa25.3■■□□□ 1.64
CCDC88C-210ENST00000555995 RASAL3Q86YV0 1011 aa25.3■■□□□ 1.64
CCDC88C-210ENST00000555995 GAKO14976 1311 aa25.3■■□□□ 1.64
CCDC88C-210ENST00000555995 PCNTO95613 3336 aa25.29■■□□□ 1.64
CCDC88C-210ENST00000555995 LDHCP07864 332 aa25.29■■□□□ 1.64
CCDC88C-210ENST00000555995 MCAMP43121 646 aa25.29■■□□□ 1.64
CCDC88C-210ENST00000555995 RRP1P56182 461 aaKnown RBP25.29■■□□□ 1.64
CCDC88C-210ENST00000555995 FAM163AQ96GL9 167 aaPredicted RBP25.29■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms