RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 NID1P14543 1247 aa9.2□□□□□ -0.94
LINC00643-204ENST00000555934 LIG3P49916 1009 aa9.2□□□□□ -0.94
LINC00643-204ENST00000555934 PCNX4Q63HM2 1172 aa9.2□□□□□ -0.94
LINC00643-204ENST00000555934 TTBK2Q6IQ55 1244 aa9.2□□□□□ -0.94
LINC00643-204ENST00000555934 FAM117BQ6P1L5 589 aa9.2□□□□□ -0.94
LINC00643-204ENST00000555934 STK35Q8TDR2 534 aa9.2□□□□□ -0.94
LINC00643-204ENST00000555934 SCARF2Q96GP6 870 aaPredicted RBP9.2□□□□□ -0.94
LINC00643-204ENST00000555934 TGIF2Q9GZN2 237 aa9.2□□□□□ -0.94
LINC00643-204ENST00000555934 CBX8Q9HC52 389 aa9.2□□□□□ -0.94
LINC00643-204ENST00000555934 SRA1Q9HD15 236 aaKnown RBP9.2□□□□□ -0.94
LINC00643-204ENST00000555934 CNTNAP5Q8WYK1 1306 aa9.2□□□□□ -0.94
LINC00643-204ENST00000555934 RASIP1Q5U651 963 aa9.19□□□□□ -0.94
LINC00643-204ENST00000555934 BEND7Q8N7W2 519 aaPredicted RBP9.19□□□□□ -0.94
LINC00643-204ENST00000555934 ANKRD24Q8TF21 1146 aa9.19□□□□□ -0.94
LINC00643-204ENST00000555934 TRIM11Q96F44 468 aa9.19□□□□□ -0.94
LINC00643-204ENST00000555934 CAPN10Q9HC96 672 aa9.19□□□□□ -0.94
LINC00643-204ENST00000555934 PIK3R2O00459 728 aa9.18□□□□□ -0.94
LINC00643-204ENST00000555934 FSCN2O14926 492 aa9.18□□□□□ -0.94
LINC00643-204ENST00000555934 IGHA1P01876 353 aa9.18□□□□□ -0.94
LINC00643-204ENST00000555934 ZC3H6P61129 1189 aaKnown RBP9.18□□□□□ -0.94
LINC00643-204ENST00000555934 FAM160A1Q05DH4 1040 aa9.18□□□□□ -0.94
LINC00643-204ENST00000555934 TRAPPC3LQ5T215 181 aa9.18□□□□□ -0.94
LINC00643-204ENST00000555934 SULF2Q8IWU5 870 aa9.18□□□□□ -0.94
LINC00643-204ENST00000555934 ZNF654Q8IZM8 581 aa9.18□□□□□ -0.94
LINC00643-204ENST00000555934 CACTIN-AS1Q8N1I8 211 aa9.18□□□□□ -0.94
LINC00643-204ENST00000555934 TMEM74Q96NL1 305 aa9.18□□□□□ -0.94
LINC00643-204ENST00000555934 RSRP1Q9BUV0 290 aa9.18□□□□□ -0.94
LINC00643-204ENST00000555934 ZC3H12CQ9C0D7 883 aaKnown RBP9.18□□□□□ -0.94
LINC00643-204ENST00000555934 ARL4DP49703 201 aa9.17□□□□□ -0.94
LINC00643-204ENST00000555934 C19orf57Q0VDD7 668 aa9.17□□□□□ -0.94
LINC00643-204ENST00000555934 NAALADL2Q58DX5 795 aa9.17□□□□□ -0.94
LINC00643-204ENST00000555934 PHC3Q8NDX5 983 aa9.17□□□□□ -0.94
LINC00643-204ENST00000555934 GRIN3AQ8TCU5 1115 aa9.17□□□□□ -0.94
LINC00643-204ENST00000555934 KLHDC7BQ96G42 594 aa9.17□□□□□ -0.94
LINC00643-204ENST00000555934 PF4P02776 101 aa9.16□□□□□ -0.94
LINC00643-204ENST00000555934 TFE3P19532 575 aaPredicted RBP9.16□□□□□ -0.94
LINC00643-204ENST00000555934 NME2P22392 152 aa9.16□□□□□ -0.94
LINC00643-204ENST00000555934 NLRP12P59046 1061 aa9.16□□□□□ -0.94
LINC00643-204ENST00000555934 PIP4K2BP78356 416 aa9.16□□□□□ -0.94
LINC00643-204ENST00000555934 SETDB1Q15047 1291 aa9.16□□□□□ -0.94
LINC00643-204ENST00000555934 GALNT11Q8NCW6 608 aa9.16□□□□□ -0.94
LINC00643-204ENST00000555934 PCDHB5Q9Y5E4 795 aa9.16□□□□□ -0.94
LINC00643-204ENST00000555934 DDX3YO15523 660 aaKnown RBP9.15□□□□□ -0.94
LINC00643-204ENST00000555934 ECEL1O95672 775 aa9.15□□□□□ -0.94
LINC00643-204ENST00000555934 LMNB1P20700 586 aa9.15□□□□□ -0.94
LINC00643-204ENST00000555934 BMP6P22004 513 aa9.15□□□□□ -0.94
LINC00643-204ENST00000555934 PWP1Q13610 501 aa9.15□□□□□ -0.94
LINC00643-204ENST00000555934 DDX54Q8TDD1 881 aaKnown RBP9.15□□□□□ -0.94
LINC00643-204ENST00000555934 PLVAPQ9BX97 442 aa9.15□□□□□ -0.94
LINC00643-204ENST00000555934 ADAMTS1Q9UHI8 967 aa9.15□□□□□ -0.94
LINC00643-204ENST00000555934 INPP5FQ9Y2H2 1132 aa9.15□□□□□ -0.94
LINC00643-204ENST00000555934 SAMM50Q9Y512 469 aa9.15□□□□□ -0.94
LINC00643-204ENST00000555934 FAM229AH3BQW9 127 aa9.14□□□□□ -0.95
LINC00643-204ENST00000555934 RLBP1P12271 317 aa9.14□□□□□ -0.95
LINC00643-204ENST00000555934 EIF4A3P38919 411 aaKnown RBP9.14□□□□□ -0.95
LINC00643-204ENST00000555934 MPRIPQ6WCQ1 1025 aa9.14□□□□□ -0.95
LINC00643-204ENST00000555934 AGMOQ6ZNB7 445 aa9.14□□□□□ -0.95
LINC00643-204ENST00000555934 KCNB2Q92953 911 aa9.14□□□□□ -0.95
LINC00643-204ENST00000555934 USP26Q9BXU7 913 aa9.14□□□□□ -0.95
LINC00643-204ENST00000555934 NOP53Q9NZM5 478 aaKnown RBP9.14□□□□□ -0.95
LINC00643-204ENST00000555934 DEAF1O75398 565 aaPredicted RBP9.13□□□□□ -0.95
LINC00643-204ENST00000555934 ARNTP27540 789 aa9.13□□□□□ -0.95
LINC00643-204ENST00000555934 PAK2Q13177 524 aa9.13□□□□□ -0.95
LINC00643-204ENST00000555934 CAMK2GQ13555 558 aaPredicted RBP9.13□□□□□ -0.95
LINC00643-204ENST00000555934 SEPT6Q14141 434 aa9.13□□□□□ -0.95
LINC00643-204ENST00000555934 SNAP47Q5SQN1 464 aa9.13□□□□□ -0.95
LINC00643-204ENST00000555934 MAP1SQ66K74 1059 aaPredicted RBP9.13□□□□□ -0.95
LINC00643-204ENST00000555934 ILDR2Q71H61 639 aa9.13□□□□□ -0.95
LINC00643-204ENST00000555934 JARID2Q92833 1246 aaPredicted RBP9.13□□□□□ -0.95
LINC00643-204ENST00000555934 RHOVQ96L33 236 aa9.13□□□□□ -0.95
LINC00643-204ENST00000555934 SPON2Q9BUD6 331 aa9.13□□□□□ -0.95
LINC00643-204ENST00000555934 SPDYE3A6NKU9 549 aa9.12□□□□□ -0.95
LINC00643-204ENST00000555934 CTSBP07858 339 aa9.12□□□□□ -0.95
LINC00643-204ENST00000555934 MAOBP27338 520 aa9.12□□□□□ -0.95
LINC00643-204ENST00000555934 POU4F3Q15319 338 aa9.12□□□□□ -0.95
LINC00643-204ENST00000555934 LLGL2Q6P1M3 1020 aa9.12□□□□□ -0.95
LINC00643-204ENST00000555934 FBXL19Q6PCT2 694 aa9.12□□□□□ -0.95
LINC00643-204ENST00000555934 KIAA0825Q8IV33 1275 aa9.12□□□□□ -0.95
LINC00643-204ENST00000555934 GOLM1Q8NBJ4 401 aa9.12□□□□□ -0.95
LINC00643-204ENST00000555934 ZNF296Q8WUU4 475 aaPredicted RBP9.12□□□□□ -0.95
LINC00643-204ENST00000555934 C8orf37Q96NL8 207 aa9.12□□□□□ -0.95
LINC00643-204ENST00000555934 TINF2Q9BSI4 451 aa9.12□□□□□ -0.95
LINC00643-204ENST00000555934 SOX17Q9H6I2 414 aaPredicted RBP9.12□□□□□ -0.95
LINC00643-204ENST00000555934 OSGEPQ9NPF4 335 aa9.12□□□□□ -0.95
LINC00643-204ENST00000555934 KCNK4Q9NYG8 393 aa9.12□□□□□ -0.95
LINC00643-204ENST00000555934 A0A0A0MRY4 1105 aa9.11□□□□□ -0.95
LINC00643-204ENST00000555934 GSTP1P09211 210 aaKnown RBP9.11□□□□□ -0.95
LINC00643-204ENST00000555934 COL8A1P27658 744 aa9.11□□□□□ -0.95
LINC00643-204ENST00000555934 AP3B2Q13367 1082 aa9.11□□□□□ -0.95
LINC00643-204ENST00000555934 FOXD4L6Q3SYB3 417 aaPredicted RBP9.11□□□□□ -0.95
LINC00643-204ENST00000555934 GPAT2Q6NUI2 795 aa9.11□□□□□ -0.95
LINC00643-204ENST00000555934 FOXD4L3Q6VB84 417 aaPredicted RBP9.11□□□□□ -0.95
LINC00643-204ENST00000555934 BNC2Q6ZN30 1099 aaPredicted RBP9.11□□□□□ -0.95
LINC00643-204ENST00000555934 WNT8BQ93098 351 aa9.11□□□□□ -0.95
LINC00643-204ENST00000555934 CORO1BQ9BR76 489 aa9.11□□□□□ -0.95
LINC00643-204ENST00000555934 EMILIN2Q9BXX0 1053 aa9.11□□□□□ -0.95
LINC00643-204ENST00000555934 USP35Q9P2H5 1018 aa9.11□□□□□ -0.95
LINC00643-204ENST00000555934 ADAM11O75078 769 aa9.1□□□□□ -0.95
LINC00643-204ENST00000555934 CYP11A1P05108 521 aa9.1□□□□□ -0.95
LINC00643-204ENST00000555934 RPS26P62854 115 aaKnown RBP9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms